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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059885 ID=TCONS_00059885|Name=TCONS_00059885|organism=Clytia hemisphaerica|type=transcript|length=3959bpRun BLAST on NCBI protein sequence of TCONS_00059885-protein >TCONS_00059885-protein ID=TCONS_00059885-protein|Name=TCONS_00059885-protein|organism=Clytia hemisphaerica|type=polypeptide|length=515bp MSFEMDRVEKGKEVKGENSDLYSYDASSNHEANHDRPKADLCCCACLPKRRun BLAST on NCBI transcript from alignment at scaffold_331:275756..329285- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059885 ID=TCONS_00059885|Name=TCONS_00059885|organism=Clytia hemisphaerica|type=transcript|length=53530bp|location=Sequence derived from alignment at scaffold_331:275756..329285- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_331:275756..329285- >TCONS_00059885 ID=TCONS_00059885|Name=TCONS_00059885|organism=Clytia hemisphaerica|type=CDS|length=15480bp|location=Sequence derived from alignment at scaffold_331:275756..329285- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059885 vs. Swiss-Prot (Human)
Match: VGLU3 (Vesicular glutamate transporter 3 OS=Homo sapiens GN=SLC17A8 PE=1 SV=1) HSP 1 Score: 451.44 bits (1160), Expect = 5.602e-143 Identity = 225/502 (44.82%), Postives = 315/502 (62.75%), Query Frame = 2
Query: 158 DASSNHEANHD-------RPKADLCCCAC--LPKRYLVAIMAFFGFVNVYALRVNLSVAMVAMVSNRTAKYANGTEYTVSPELDWSPKLQGFVLSSFFYGYIITQIPGGWLATKYGGKNLFGCGVLMTALFTLITPPAARCNVYLLVAVRMAEGLFEGVTFPSIYAIWRKWAPPLERSKLATISFSGPFAGTVLGMPLSGVIANSFGWPWVFYTFGLFGVIWSFFWFALVTDSPCDHPKISKEELDYIQISLKQDKPEKQVE--NIPWKDFITSLPVWAIIIAHMTENWGWYTLLTQLPTYLKSVLDFNLQAAGFLAALPYLAMVIVVQCAGRLADFLRSRNMMSTTAVRKMFNSIGFFSQALFMVIVGYTKNKDLAIIGLTLAVGLGGFAGTGFPINHLDIAPRYASILFGISNCFATLPGIISPLVVGLITPHETQEEWRVVFFIAASIYLFGLLFYCIFASGEKQEWADGNQYFNHTNDDGEEGHELLANKSGVDEEDE 1630
+ N E N + RP LC C C LPKRY++AIM+ GF + +R NL VA+V MV+N T Y +G + + +W P+ G + SFF+GYI+TQIPGG+++ K+ +FG + +T+ + P AAR + ++ VR+ +GL EGVT+P+ + +W KWAPPLERS+LAT SF G +AG V+ MPL+GV+ GW VFY +G+FG+IW FW + P HP IS EE YI+ S+ + + + PWK F TSLPV+AII+A+ +W +Y LL P Y + V F + G L+A+P++ M IVV G+LAD+LRSR +++TTAVRK+ N GF +A +++VG++ K +AI L LAVG GFA +GF +NHLDIAPRYASIL GISN TL G++ PL+VG +T H+T+EEW+ VF IAA ++ G++FY +FASGEKQEWAD L K G+ ++DE
Sbjct: 41 EEEDNIELNEEGRPVQTSRPSPPLCDCHCCGLPKRYIIAIMSGLGFCISFGIRCNLGVAIVEMVNNSTV-YVDGKPEIQTAQFNWDPETVGLIHGSFFWGYIMTQIPGGFISNKFAANRVFGAAIFLTSTLNMFIPSAARVHYGCVMCVRILQGLVEGVTYPACHGMWSKWAPPLERSRLATTSFCGSYAGAVVAMPLAGVLVQYIGWSSVFYIYGMFGIIWYMFWLLQAYECPAAHPTISNEEKTYIETSIGEGANVVSLSKFSTPWKRFFTSLPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFAISKVGLLSAVPHMVMTIVVPIGGQLADYLRSRQILTTTAVRKIMNCGGFGMEATLLLVVGFSHTKGVAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPLIVGAMTRHKTREEWQNVFLIAALVHYSGVIFYGVFASGEKQEWADPEN--------------LSEEKCGIIDQDE 527 The following BLAST results are available for this feature:
BLAST of TCONS_00059885 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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