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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059874 ID=TCONS_00059874|Name=TCONS_00059874|organism=Clytia hemisphaerica|type=transcript|length=1306bpRun BLAST on NCBI protein sequence of TCONS_00059874-protein >TCONS_00059874-protein ID=TCONS_00059874-protein|Name=TCONS_00059874-protein|organism=Clytia hemisphaerica|type=polypeptide|length=368bp MATILQKIAEIESEMARTQKNKATSHHLGSLKAKLAKLRRELIEPKGGGARun BLAST on NCBI transcript from alignment at scaffold_331:74971..93087- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059874 ID=TCONS_00059874|Name=TCONS_00059874|organism=Clytia hemisphaerica|type=transcript|length=18117bp|location=Sequence derived from alignment at scaffold_331:74971..93087- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_331:74971..93087- >TCONS_00059874 ID=TCONS_00059874|Name=TCONS_00059874|organism=Clytia hemisphaerica|type=CDS|length=14391bp|location=Sequence derived from alignment at scaffold_331:74971..93087- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059874 vs. Swiss-Prot (Human)
Match: DRG1 (Developmentally-regulated GTP-binding protein 1 OS=Homo sapiens GN=DRG1 PE=1 SV=1) HSP 1 Score: 552.747 bits (1423), Expect = 0.000e+0 Identity = 303/367 (82.56%), Postives = 334/367 (91.01%), Query Frame = 2
Query: 110 MATILQKIAEIESEMARTQKNKATSHHLGSXXXXXXXXXXELIEXXXXXXXXXXXXXXVAKTGDARIGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNXXXXXXXXXXXXXXXXXIEKELEGFGIRLNKNPPNISLRRKEKGGINLTTTCAQSTLDSDYVKTILGEYRICNADITLREDVTEDDLIDVIEGNRVYVPCIYVLNKIDQISIEELDILYKVPHTVPISAHHKWNFDDLLEKIWTYLALVRIYTKPKGQLPDYTAPVVLQESRTTVEDFCNQIHKSIMKQFKNALVWGGSVKHQPQKVGREHELMDEDVVQIIKK 1210
M++ L KIAEIE+EMARTQKNKAT+HHLG LKA+LAKLRRELI PKGGG PG+GFDVAKTGDARIGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRG+QVIAVARTCNLIL+VLDVLKPL HKK+IE ELEGFGIRLN PPNI ++K+KGGINLT TC QS LD++ VK+IL EY+I NAD+TLR D T DDLIDV+EGNRVY+PCIYVLNKIDQISIEELDI+YKVPH VPISAHH+WNFDDLLEKIW YL LVRIYTKPKGQLPDYT+PVVL SRTTVEDFC +IHK+++K+FK ALVWG SVKH PQKVG++H L DEDV+QI+KK
Sbjct: 1 MSSTLAKIAEIEAEMARTQKNKATAHHLGLLKARLAKLRRELITPKGGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCNLILIVLDVLKPLGHKKIIENELEGFGIRLNSKPPNIGFKKKDKGGINLTATCPQSELDAETVKSILAEYKIHNADVTLRSDATADDLIDVVEGNRVYIPCIYVLNKIDQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKK 367 The following BLAST results are available for this feature:
BLAST of TCONS_00059874 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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