TCONS_00059855 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059855
Unique NameTCONS_00059855
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length829

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059855 ID=TCONS_00059855|Name=TCONS_00059855|organism=Clytia hemisphaerica|type=transcript|length=829bp
TGTTGAATGGCTTTGGATGTTGTGTCAAGAATCGAATCATCTGTTTCCAG
ATCACTTGATGGTCTTTGTGAAGAACTTCGAACTTCGATCATTTTTCGTT
CATCAACCAGATGTAGCGAATCCAAGCCTGCATGAAATTAAATTGGCAAT
TGTTTTGTCACACGAGAATGACATTCTATTCCATACCCTTCACTTCCAAC
GATATAGGCTCAATGGAGACTTGGTAGAAAATGGGACAATATTACACATT
CTAACTGataatgaaaattgatttcatATCCCGTGGAATAGTCCAGAATA
TCAAAAATGACAAACGCTGCTCTTTTTGTCATTACGTTTCTACCATCCAT
TTTCTCATCTACCATGGTGCAGAAAGCTGAAAAGCTAGAATCAGTTTGTA
CTCAATTGCAAGCAGTCTATCCCAATATGTGTGGCAGCGATGTTGTCAAA
AACCACTGTAGTACTTTATGTTCTAAAGGTGTTGACCAAAAACTTACTTG
TGGTAAACATGTAAAAAAGCCACACACTCGGCGGCGCCGTATTGTGGGTG
GTGTGGTTAGCGATGCCGGAGAATGGCCATGGCATATAAGTTTACGAATG
GGTGGTAAGCACGTATGTGGCGGATCAATATTGACGCCCGAAGTGATAGT
AACTGCCGCCCATTGTGTTGATGCAAAATACACAAGTGAAGATCCCAAGA
ATTTTGACGTTGCAGCTCAAACGAATTATCATAAAGAGCCTGGACAGATT
GTTCAAGTGAAAAGATTGATTCGACACAAGGAATATGAATTCACTGATCA
TAAATGGAGGGACTTGTTCTTCGTATATG
Run BLAST on NCBI

protein sequence of TCONS_00059855-protein

>TCONS_00059855-protein ID=TCONS_00059855-protein|Name=TCONS_00059855-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
MTNAALFVITFLPSIFSSTMVQKAEKLESVCTQLQAVYPNMCGSDVVKNH
CSTLCSKGVDQKLTCGKHVKKPHTRRRRIVGGVVSDAGEWPWHISLRMGG
KHVCGGSILTPEVIVTAAHCVDAKYTSEDPKNFDVAAQTNYHKEPGQIVQ
VKRLIRHKEYEFTDHKWRDLFFVY
Run BLAST on NCBI

transcript from alignment at scaffold_331:1147294..1164220+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059855 ID=TCONS_00059855|Name=TCONS_00059855|organism=Clytia hemisphaerica|type=transcript|length=16927bp|location=Sequence derived from alignment at scaffold_331:1147294..1164220+ (Clytia hemisphaerica)
TGTTGAATGGCTTTGGATGTTGTGTCAAGAATCGAATCATCTGTTTCCAG
ATCACTTGATGGTCTTTGTGAAGAACTTCGAACTTCGATCATTTTTCGTT
CATCAACCAGATGTAGCGAATCCAAGCCTGCATGAAATTAGTAAGTTTTA
GAAcaaatttataattctttttAGAATATAACCAAGAAGCTtccattggg
ctcttccagaaataaTCTGTATCCTCCTATAGTGAGGAGTTGTGACGTCC
AGGgtcgaggggcaaatcactcgaaaaattggTGTACAGTAGCGGCCTAG
Ctcaattttcttggtggtgcaagctatgaaattggcgcccctggtacttt
tgtccttacttgcgccctccattattaagtggaaatattaaactgtaaga
gcagtgactggatGAAAGTAACGCCCAGAATCTTTGagtttaaaaacttt
tattcaTACGAAGGTtgtggtaatgataacttgatatctatttccttgtt
attaTTTTAAATGTCATAGTTTTCTGAAcaagtaaaaaattttcctattt
tcaacttttaaaatgtctaaaaatgccTCAATTTATCTTATACCGATTTA
ACACCAAAAAGAAAGCtcatcaaataaaaaacatgagctgaaatggaaat
tttatagcTAGCAAGTCGACTAGCAAGGCGATTTGgtctatatttttgtt
ttctaaaacttcATCAGAAAAATGACCTGATAACCTTAAAACTTTTGCGc
cgctggtcttactttactctccattaaagaaaaatggctaaaaaagNTGA
TAACCTTAAAACTTTTGCGccgctggtcttactttactctccattaaaga
aaaatgggtaaaaaaggCCCCCAAATTTTGAAAGTTGACAGGAATAAGGG
TATTTTGAATCTTGGCGCCGCGGGCAAAAAATTTTGACGTAAGAaacgtc
aaacagcttaaaagatcttctaaaaaggagaaagttaatCAGcgtaagac
cacaaaaaccacagtgAGCATTGTCAAGTTTCGATttttttggcaatctc
tcattttgaaggTGAGGATCCTCTTTAGCCCCTAGTGGATTCACAACACT
TCTTttgctttgacttttttgcGATTCAATGTTGAGAGTAGTTTTTAACA
AAGTCAAGAGAAAGGATGCAAGAGCGTAAAATAAAaggaagcgccgcagg
cgaaaaaattaacattgcacttatagaaggcgtTACAAACTTGTCGAAGG
GCGCCAAGTcgcccaattaaacatcaatACAATTTTGGcacccccttgaa
aagctcttttggcgcccctttcagatctttctgggtggtgcactgcacac
cctgcaccccctgccaggccgccactgatggtgtacgagatttattttat
tgatttgcccccaatgaagtataagcccgaagggctagaagtcaatctct
ttggtaggatttgaagccaacaaatcctaccaaagttgcgcggccttgag
cgacccgcctggtttttacacaaatgacagattgaaactaaaatataccg
cttaattttgaaaaatatatcactcgaaaacaaaggaattgctagattca
atccgtcatcaaaaatacgacgcatattttaaggcttcaatttttcttgc
ctgagaaaggttagagattgacctctagcccttcgggcttgaaactcaat
gtaaAAATTCAGGGTGTTCAGTAGAACGAGGTCAAAAATCCAGAggtggt
ccaaaaaatgagaaaaaattcaAGCGGTccctaaaaaattgaaaaatatc
caGGGGGTCATCTTTCCCAAtaagacctcctcaacatagggggtaaaatt
ttttttcaggaatgaCCCGTTACCATACCGTTCTCTTAAATACCTCGTCT
AGCTTTATAGCGTCATAGTTTTTCTTGCTTATCTAAATAGATTTAATTTC
TAATTTTCATCAGATCGGTAGAATGTGTAGCTCACGATTCACTTTCAACA
GTCCTTCTTCAacgttttctcaattttaaaaaattttactttttattttt
tattttattggatCCCCTATTAGTACAAAAGCTTTCTCTCTTTATATATG
TGTAAAAGGCTTTTTAAACACAGATTTGGAGAAATCGGGATAAATTGGCT
TTTttaggagggggggggggggNCAAAAGCTTTCTCTCTTTATATATGTG
TAAAAGGCTTTTTAAACACAGATTTGGAGAAATCGGGATAAATTGGCTTT
TTTAGGAGGGGGGGGGGCCTActgtacggggtttgcgatttccgaaatac
cgaataattttgccaaaatttccgaaattccgtaaaaaaatacttgcaat
tccgataccgattttttggggtattttttctcgttttgactaatttttca
tcaaatttaatttttcatgtatgaattccgaaaaatggggataaaaactt
tatttgatTGTTAATGTGaccaaatcaataaatcaagtCAACTTTATTGA
AGCTTGTATCATAGAAGTTCGCCTAAGTGGtaatgacttactggtttttg
cATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CATGCCTATCCATATTGTTTGGATGGAAATCAgcttgaacatgtttttga
agagaaaGATCTTGGGATTGTGATCGACTCAGAACTTACATTCGAGAGGC
ATATTGCAAAGCAGGTAAAGAAGGCAAATTCAATACTAGGAGTGATTAGC
AGGAGCTTTGAACATCTGAATCCATCCATCTTCCTAGTACTATATACTTC
GTTTGTCCGTCCGCACTTGGAGTATGCTCAGTCGGTATGTGGTCACCTAA
ACTTcgaaaatatgttaatttgatCGAGGGTGTACAAAGACGCGCCACAA
AACTCGTGCCTATCTGCAAAGATATGTCCTATGAAGAACGCTTGCGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGCATACTTGACCTCCCCACGCTT
GAATTCAGGAGACTCTTTTGTGATATGGTCCAAGTATACAAACATCTCCA
CTACTACGATAAAAATACTCTTCCAAGTAAATTAAAGACTCGAACACGTC
CGAACAGGAGACACAAAGATGAGCTGATACCAAATTTTGGTAAAGATGGA
TTCCGAGGAGCACAAACCAACTCGTTCTTTTACAGGAGTATACCAAACTG
GAATAGATTACCAAGATACGTTGTAGAGGCAAAGACtgtcaaaatcttta
aagaaagacTCAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTtattataataccgaaat
ttcgaagcaaaaattcatggatttctgataccaaaataatttcagaattc
cgaaatactgaaggaatttttccccgatttccgaaattccgaagaaaaaa
gggtcgatttccgcaatccgaaataccgtacgccccccacttttTACATA
AAAAACGCGACATacctttcttttcttcttgttCTTCTTTAAGAATGTTC
AAAATCCGCAAAATGCTTTTCTTTACTTCATAGACAAGATCTTCTCGAGG
CCATTCATCGAGTTCTTTCTCATCTAAGGAGTAATAACTCTCGTCATCAT
TCTCATAATCTCGAGTTGGCATCTCCTCATTCTCACAAGGGGTATTAGAT
TTAACATCAAGTCGATCGAATTTTGTCTTTTCTCTGTTATTCCGAGTTTC
caactcttcttcttcttcgctGTCACTTCGAGTTTCCAACTCTTCATCAC
TGCTACTGTATGAAGGTACCCATTCTTCATCGCTACCCCGAGAAGACAAC
TCCTCTTCGTCACTCTCGAGAGCTGTCGATTCATCGTTGTGGATTAAATC
CCGAGTTTGAAACTCTCCTTCCTCGTCATTAAGTGTAAGCAACTCTTTAT
TCTCGTGAAATAAATCTACATTTGCCTCGCTTGGTGAGAGAGCTGTTTGA
TAAATGAGAACTTTTTGAGAATTTGTATTTTCCATACTCCTTAGCCTCGG
AAATCTTCCCGTAGGAGGTTGGAAGATAAATAACAACACTTCAAGAAATA
ATGAATACATTTGTATAAAGACTATAAAGAGCGTTTTCAATATATGgggc
aaatttggaaaatcttgaaaaataatGTCGGCTTACCTTTTTCGTCCCTG
GGCTGCTTTGGTATTTCGTCCTTTTTCAGTTTAGAGACCAATACTCGGAG
GTTTTGTAGTTGATAAGTATTCACGTCTATAGCACTGTCAGAACTTCCTC
GTCTTGAACTTTGTCTCGATCTTCCAGATACATTTTCGATAGGTTCGTTA
AGGAGACTCTCGGTATACGAAGCAGTAGAGTCTCTGCGTCTCGAATTTTT
TCTCAGTCTTCCAGATGTATTTCCAATTGATTCATTAAGTATACTCGCAG
CAAGTGAGTCATTAGAGCCTCTTCGTCTCGAACTTTGCCTCAGTCTCCCA
GACGTATTTCCAATAGATTCATTAAGCAAACTCGCAGTAAGCGAGTCACC
AGAACCTCTCCTTTGGTTCGTTGAGCGTCTACTCATCTGAGAATAACCAT
CAACATTTGCGTTCGATTTCAATTTTAAGAAAGCCTCGTAAACCGGTGGA
GAGTATTTCCAGGCAATCTCACAAGGAGTCTGACCCGCGTTATTTGGAAT
ATCCATATCAGCTCCTAAGCGGGCGGCGTGCTCTACAATATCTTGAAGCG
CATCTCGTTTAGCCAGCATATGCAACACTGTATTACCTGCGAAATCGATA
AAGTTTAAGACTAATGACAGATCAATATCATTTTGGTAAATATTAATCAT
CATATAGAAAACTCCTTTCCAAAATACGATATCGCTTTTACTGCAGTTAA
CGAGGAAATCTGCGACTAGGTGGAAAGGCGTATTTTGGTTGAAATCTGTC
ACAGATAAACATTTATTGAGAAGTTTAATAATGGCTGCTATTTTAGTTGG
CTTCATGTGTTGTAAAGCTTCAGTAGCGATTAAACGATGTAAAGCAGTAT
CGGAATCATGTGATAACGTGGTTGGATCAATGTTAAAAGGTGGTTTTATA
AGTAGCTTTAAGGCCATCCGGTTGCCGAGTACAGCAGCCCAATGAAGAAG
TGGATATTGGAAGTCTGGTCTACGGTCAGGAATCTCTGCATCGAATCTTT
CGATGACGCCGTTAATTTTGTATGTTCGTAAAAGTGTTTTGTATTCTTCG
TAAGTTTGCCAGTTGTCAATTTCTGCCATCTTTATTAAGAGCACGTGGTG
ATCGCCTTCGCAATCTGGACGGCAAAATCTCTCGCAAATTACATTCATGG
TTGTAATAAAATTATTCGACAAGTATTTTGTTAGTGTATTTTGCGAATCA
TGAAGTGTTTGTTTCTTCGTATGATAAAAGATCGttgtcaaaatcttttt
ttaggtgtcgatttttttaatagaaattgacgtcatttttttgaatgaaa
atgcaACGGCTTCGGTTTACgtaatttattttcaactttattttgaattt
aactTCACGAGGTCCGATCTCGATCCTCATTTCAATATTGCAAACGTTAG
TCCTGGTTTAAACAACCGACTATCTTCCttgtctattctaattgtgagaA
TTAAGGTGGGCAGAAAGTTGGCTGAACAAAGTTAATAGTTTTCCTTCTTT
TGACCTTAGTGGATATGACTTCTCCAGTGATCCTGATTCTCatcttaaag
atatttttactttatcaatgtgttaaaagtttttccgtCTCAACGAGGTA
TATAAAGAGGCTTTTCCTTTCTCAAAATTCTGCTTGATTcaccaaaatct
taagaatatGCGCTAATTTGCCGTGTTGAATCCATATTCCGGCTCATACG
AAAACATTGCTTTAAATACTATTATTTTTACTATAGTGTCCTCGTTTTAT
ACCTGACACTTTAAATTAGGAAGAAacttttatatattttccaCATGGTA
AATAAAAAAGACACAAAGTATGATACGattaattttactttattttttcg
ttttcaGAATTGGCAATTGTTTTGTCACACGAGAATGACATTCTATTCCA
TACCCTTCACTTCCAACGATATAGGCTCAATGGAGACTTGGTAGAAAATG
GGACAATATTACACATTCTAACTGGTATGACATATTATTGAAATTAGTTA
TCTTTCAGAATAAGGCATACTCTCCATTATATTCCCCATTTTCTCTAAGT
GGGATGAAAacttctatcgaaatcccaaatGGGGACAGAAGATCTATTGT
TTCCACAGCTCAAAACACCCACGAGGATGGTTTTTGAGTGCAATTTTGTC
TTTTAAATTTCCAGTGGGTGTTAAAATTTTAGATTACTTTTTCTACCGGG
GACGgctttttggccaatttttccagtgagatGAGGGCTCCACCGGGTCT
GCTATATGGGGGTGTACAGAGTTATAGAGAGCATCTAGTCACCCTATTCC
ACGATAGCTACCTACTCATTCACAAAGACTCTATCAACTTACCTCTTATG
ATtagtttgataattttttttcaatctgttTCATTGAATTGCATCGAAAA
CATTGAAGGAAATGATAGAAATATTTCGGCAATTGAATACTGAAGATACG
CAAAGGTGTGTCTCTAATTCAATTTGCATGAAGACAAAATAAGATTATAT
CGATGATGCAATTGCTTTATGTCGTCCAGACAACTATgtatttgttgttt
tgattgaccCTTAACAGGATTTAGATCAAGAGGCACTTCTTATCGCCTGT
ATCATTGAATACTTTTTTGTTTAGTCACAACTTTTATCGCTATTAATGGT
GACATTGGCTGACTGCTGGGATTGCCAAGCGTCTGGTTACTACATTCACA
AACCACTGTCagatcatagatttataaagcccgaagggctagatggtgta
cttttgctgaaaagtgtgccgtggctaggtaggaaatcctacctaagtca
cgtgacattacaatagaatttcagctttagaccaatcaaaagcttcgata
ttcactttttttgcctgcgatggcttaaagcacgacatctagtccttcgg
gctttataaatctatgtgtCAGATAAGATATTAAGAGAGATCAAAGTTTT
CTGACGAACTTATTTACTCAAGTGATTAGTGTATTAAACTTTTTAGATGT
AGTGACTTCACGTGGTTATTATTAATCGTtggtacacccctgtgtcaaag
aCCCGCTAGGAccacagccccactggaaaatttggcaaaaatttcgttcc
TGGTggggtgggaaaataccctggaatttcagctccactgggaaattgac
ttgaATTTCATCctcactcgaaattcaatgtttaataataatttcactcc
aaaaccatcccaactgCACTTTTTAATCTttagaacaatataatttctat
ccctattgggatttcaataggaatttttaaccccactgaggaaagaagct
ccaccggggtgtgagacaggggtgtcttggTTCACTCTGGTTCACTAGAC
AATAATTACGTCCTCTTTAAATTTTAGAAAGTACCCCTATATAGAGGTCT
CTATTTTGACATGTGAGCCTCTTGAGTTATTATCAAGGAAGTATTAGAGA
GATATACACCCTCTTTGAGGAATTACTATTATGACTTCGTGGCTAAAGGA
CTCAAAACGGGTGTTCCCACCAATGGAGTTTCTTCTGTGGTTTAAGTTTA
CTATATAGGATAGGAATTCAGCTGAATTGAATTTTACCCCtgccatacac
gttttttaataagagcatttttgaagctttcggatgttcttacctttttg
agttttaagcctaaaaatattcttaacatgttcttattttgaccattttg
tgagtatttttgaccattttcctaagaaatagggtgtttttgagacaaca
aagccttaaaatgttctcttaacttgttcttaacattttggccagtgaag
ccttatgttcttatatagtctgttcttataaaaaaacgtgtatatataTA
TTCGATTTCTTGATTTTGAGGAAAtgttaattatttttacaaactTTATG
CTTTGAACAAATTTATAAATCACTAGTTAAGGAATACATATTACCGCGAA
TTTTGAGGATAGCTACCCTCCTACGAACTAGATTTTAGACCCCTTTAAGT
GTAAGGTCATTCTTAGAATATTTGGATATTTTAATAGAAAGGAGAATTCC
TTTGCTTTTCTCGTGCTTCTCTATCCCAGGAAGATATAtttgctttttaa
aaatctcaaaagaaaatattatatgcATGCTAATTTAATTTTGCTATGTT
TGAAGTTGATAACCGATTAAGCTCGTTTAAAATGGATTAATTTGCTCTTT
CACGTGTAAAACAACGTTTGCCAATAAAATATTGACCCAAAATGTATTGA
TATATGGATTTGTGtgtttatttattgattgatattttattgtttttttt
tcttcaattgctTCCATGGTCcacaaaaatctacaaaaaattcataattt
aGGGAAGACGAACCTCTTTTGGTATGTGTGCGATTATGTTTCAAGTTAGA
gtagatttggaaaattttgtgttgatttgaaaaatgttttaaagcccggg
ggggggggtactagggtaccgcccgactttcgaactttggacccttaccg
ggactaaaaaggagaaaacaaaggaaaatttttggaattttaagactctt
agcgggacaaatttgaccaattttgaccaaatttcgatctttcaggggta
AAGagtttgcctaagtacccctccccccgggTTTTAAAGGCAccccaagc
ggttttcgtgatggtgtgattggcgtttttcaagttcgtgatttcgtgat
ttaagaATTTAAAGTGTGTCATTCCGTGATCGGAGGAGTTAACGCAATga
acgtgatcgtgatagaaaggaaatttaactcgtgattacgtgatttggaa
ttttttttttgcgtgatttgaaagatgaCTGGGGAGGGCCTCTTTTGCAT
TGCTGGGAACggaaaatagaaaaagtgaaaGTTGCGTCAGAGCAGAAGAA
CCAAGACTTTTTGGCCTAGATAAGACGATTTTCACTTTCGTTATATGCTT
TATACAGCAAAATTCCTTCTCGATAGAGTTcgagaatgtttttttttcac
atgcaAAAGATATCTAGATTTCTTGATTAGCAAGTCCATTACGGAAGATG
TCAACAACATGATAAAAACTTGTCAAACGATCTTATCTTTTCTACCTATG
TAGACATTTCATTAATTTGCATTCAAATCTGTTTAATGTGAAATCAATTG
ATCAAATTTGAGGTTACAATATTCAAATCTTATCTAGATTTGAGCTGAGA
GACCAttctaaattttgttagatgGCAAAGAGGGAATTCATACTGTAAGT
ATCGATTTAAGCTCAAAGGACTTTAGCTTTGATTTTAATCTATGGTTTGA
TGTAGGTTTCTTTTTACTATGGATGAGTGAAAATTTGATTCATAACCTAA
TCTGGTCACCATTATCCTAGGGACTCTCTATTCCCACTGGCTTAAAGAAT
ATGACCAGGTTTCTGAGACAGGAATGCAAAAAAGTTTTGTGGCGAAATAG
AACTGATGCTGTAGTTGTGGTGGACCTATGAAATGCATAGAAGATAGAAG
ATAGTTGGTCAGAAATGTTGTGAATTTCTTCAAATATATTTAGCTCCACA
AAAGTGCTCATCTCTTATTTGCTCTTACTCGTTCGGGTTTAGTTTACGCG
ATGCTTGAATATTGCGAGTGCGTTATTTAAAAGGAATAcaattttattgt
aaaaaaaaactgtGACTTTAAGTGTAATAGGTTAAATGATCTtgccttta
tataccctggaccaagtttctcattcctagccaagcaaaatctttgattg
gagtttttttgaaagtgtcaccataatggtagcactactcgtaaactttt
gatgatgtagcgccgttagacgttaatttttaacactgcaatgacttctt
tacgggtaccaattccaaaaaaaactctgatcaaagatggcagatatagc
ttggtccagggatacaTAAAGGTCAGTGAATAGGTTACTTATGTGACTTT
GCTGACATCAGATTTCATGATATAGACCAAACAAATCATAATGCGTTTGT
ATTAATCTTTATTTGTATAGATCGTCCTGACCTTAAAGCCCTCATAATCG
CTTGATTCTGACGTATGTCCAGTTGACCTTTCTATGTATGAAACTATAAA
ATAGAGGGTTTATATCGGCATAGCATTAGTAAATGTCTTTTAGTAAGGAG
GAGTTTTGATAGCCCGGATAGCCAATATGAtttctttctcattttgatAT
TTCTGCTACAATCATGATCGAAGTATATTGAGAATTCAggttattttaat
gttttttttcaaagatttaaaattccgtcgagaaagtcgattttgggggT
CGGCAGACTTCTAGgatatattctgagccttattggactatttttgaact
tttggatcatcagatcctaaggtcttaagtctagtATTAAAACTCGAACC
TTctaacctactttagagcacttacaaatcgattatggtttcaaaacttc
ccggggaatttcccttttttctcaaatattatgaccttgattgtatatTT
AAGGGTTGATCTAACTAACTAGATGCTTATGAGATCAGGGtcggcaaatt
tttttgctctgCATAATAATCGAATCGAAAAATACGTATACGCTGCCTTC
CGATTTTGAAATGCTTTAGGAAGACCAGGTGGTAAATCAGAAAcatccaa
aatagaaaaatagtgAAAcactggatatccaggctagagtTGTTGATTTT
CCTTCTTTGAAAAAAGTACAAATTACGCTCTTTcgattttttaacgtttt
ctttATTAGTCAGGGATAAAATCAAGTTAGCCTATCAACGGTTGCGTAGA
CGATATTTTGTATCCATTTCTATCGAAACATCATTCTTTTACACAAGTAc
gctgttttttataagaacaattttacaagagcAATGAGACTCGAAAATTC
CATAAGATAAAAAGAAGAACAACCCTCAGCCTGGAATTTCCAGCAAATCC
Aggaaaattctgatttttttgctctaaaagagttgaaaatttgagaaaaa
tgcactgcaagggtatgaatttcaccaattttttctgcactgtaagggtg
cgattttaaaagccaattttttcgtcGCAAATACCAGTTGGTAAACCAAA
TGCCCCCTGGATCAACTTAGTGATTGAGATGTTCAAGATTCAGATATAAG
CGTATGCGTAAGGGCAGAGATTTTCACCATcacgaaaaaaattatatata
ttctATATAAGCGATTCTTTATGTTTCTTTCCTCATAGTTGAagtaaaca
aaattttagttgggaaatattttttttggttaagaaaatcaagtttaaat
AAAAGTTATGACACTTTGCAAATATAATGTTTTGGAATTTTAAGTTTGTG
CAACTAATAGAGCCTTGTGAAGAatgatattttgaaacttttgaaatgaa
aaatggaaatttttgcgaaattttgcaaaaaaaaatatcataaaaacatt
gttttttttctggaatgaaaaatatgtcaaatgacatattttttcgaatt
ttctatGTTGAATTTCGAAATAAGTTCTTAGAAATGTTTGAGGGAGGATT
GACGGCAGgagtaaaagtaaattaaaagaactATTAGAATTTTATAGTGA
GCGAATATTTAGGATTATTTGTTTTATAATATGAAAATAGTGTGCTCTCA
GTTCACCCATTGTTTTCTTTATAGGAGACATATTTTCCGACACTAAattg
taattaattttttaaacgaaaattttAGCTGCGTCATTCTTGCTTAGCCC
TGTTTGtggaaaaactgagaaaaatagATTCgtttccttatttttctctt
cagtttgttgtttgtgaaggTCGAGAGGGTAGGGCTATAGTACGGTTTAA
GGATGTTGGAGGGTCTAAAGAGTACTAATTTATAGTTATGGTTTCTtaca
aacacaaaaataaatataaaggtaaaataacaaaaagttaGATCTTATAT
ATGTACAGGGAACATAAATCTTGTTTAAAGGCTTTTTTCTAGGGGCTTTA
TACCGAAAGGTATAATAAGTGGATAACTCGAACTTCGACAAATCGAAAGT
CTTGAGAATACAGAAGTTCGAGCCTCTACTTAACTTCTTTGTTTGTATGT
TTTAGataatgaaaattgatttcatATCCCGTGGAATAGTCCAGAATATC
AAAAATGACAAACGCTGCTCTTTTTGTCATTACGTTTCTACCATCCATTT
TCTGTAAGTCATTTTTCTGGCAACCGACGTAGAAATTTTcctccgacacg
ctaaagctctgaaggaaaaatttttaatattttaaattttcatctttaag
gTTTGGAATACAGAATTTCGTCAGACCACGCTACGGAACTCTGTTTTAAG
CTTTACCATATTTTTACTTCCGTGTATTATTTTAAGGTTGATGTATATAT
ATTAAAGGCttcttcttttctcttttccAGCATCTACCATGGTGCAGAAA
GCTGAAAAGCTAGAATCAGTTTGTACTCAATTGCAAGCAGTCTATCCCAA
TATGTGTGGCAGCGATGTTGTCAAAAACCACTGTAGTACTTTATGTTCTA
AAGGTAATATTTGTCTAGTAGGAGACAGTAGAGGAGAGATCCTCAATTTC
CTCTTTTAGATTTCATTGATTCAGGACTGTAATTTCTGATTTAGTTTTGT
CATTGATAATAATTTCCTTTACCAATAAAAGCAGTATTGAGAGAAGGAAA
ATATCATAAATTCTACGTTTGTAGGAAACTGGCTCGTTATTGAGGTCCCG
GGGTGTACCTGGACATATGGAAGAGTAGGGGTGTGTTTTGTCGTTAATGA
TACTTCTTTTGGACCTTCGAAATCCCGCTAAGAGTCGTAAAAACACCCAC
TCGCCATCTGGGAACCTAGTACCCCATTCGATATCACATTCACGCTTGGT
TTTCTCTAGCAAACAAATGGaattttggaattatatttCTTCTTAGATAG
CGCGATAGTAACAAGTTTTGAATTGCTGTAGTGAGATAGAGAATAAGAAA
TAATACTTGTTCCCTTTTAGGTGTTGACCAAAAACTTACTTGTGGTAAAC
ATGTAAAAAAGCCACACACTCGGCGGCGCCGTATTGTGGGTGGTGTGGTT
AGCGATGCCGGAGAATGGCCATGGCATATAAGTTTACGAATGGGTGGTAA
GCACGTATGTGGCGGATCAATATTGACGCCCGAAGTGATAGTAACTGCCG
CCCATTGTGTTGGTAAGTGTTTTACACTTGTACATTCGTGGTCAATTTCG
ATTATCTTTTAGTCCATAGTGAGTAAACAATTTTTTATAGGAATTACATA
AAACTAAGGTGACCACCCcagttttatttttctcttaaaTTCTATCTGCG
GCAGcagtttataagaattttatcgTGCATGTCCCCAATCACTTTGTTAT
ACTATTCAAAGAATCGAAGATGGAGAAATAGAGTCGATAATTTACattgg
atagcccagtaatcttgAACTTTTAGATAGTCTTTCCATTATTTTCACGG
GGCCTACGACTCCTACAACTAGCCAGAAGCAGAACATAACCTCATTTTAA
ACTTAAACAGACTATATCATTGCATATTTCTAGTTTTTTACGATCCTTCT
GAGACAATATATCGGACACTTGGAGGtattaaaaataacaaacaaatcTA
AAACAGTTTCTTACTTCGAGTATACAATTTGTCATACACGTTTCAGGTAC
AATTTTGGTGCAGTCCTaatgaataaaatttttgttgtttttatttttta
ctttaaattctATTGTAGATGCAAAATACACAAGTGAAGATCCCAAGAAT
TTTGACGTTGCAGCTCAAACGAATTATCATAAAGAGCCTGGACAGATTGT
TCAAGTGAAAAGATTGATTCGACACAAGGAATATGAATTCACTGATCATA
AATGGAGGGACTTGTTCTTCGTATATG

Coding sequence (CDS) from alignment at scaffold_331:1147294..1164220+

>TCONS_00059855 ID=TCONS_00059855|Name=TCONS_00059855|organism=Clytia hemisphaerica|type=CDS|length=2088bp|location=Sequence derived from alignment at scaffold_331:1147294..1164220+ (Clytia hemisphaerica)
ATGACAAACGCTGCTCTTTTTGTCATTACGTTTCTACCATCCATTTTCTC
ATCTACCATGGTGCAGAAAGCTGAAAAGCTAGAATCAGTTTGTACTCAAT
TGCAAGCAGTCTATCCCAATATGTGTGGCAGCGATGTTGTCAAAAACCAC
TGTAGTACTTTATGTTCTAAAGGTGTTGACCAAAAACTTACTTGTGGTAA
ACATGTAAAAAAGCCACACACTCGGCGGCGCCGTATTGTGGGTGGTGTGG
TTAGCGATGCCGGAGAATGGCCATGGCATATAAGTTTACGAATGGGTGGT
AAGCACGTATGTGGCGGATCAATATTGACGCCCGAAGTGATAGTAACTGC
CGCCCATTGTGTTGATGCAAAATACACAAGTGAAGATCCCAAGAATTTTG
ACGTTGCAGCTCAAACGAATTATCATAAAGAGCCTGGACAGATTGTTCAA
GTGAAAAGATTGATTCGACACAAGGAATATGAATTCACTGATCATAAATG
GAGGGACTTGTTCTTCGTATATATGACAAACGCTGCTCTTTTTGTCATTA
CGTTTCTACCATCCATTTTCTCATCTACCATGGTGCAGAAAGCTGAAAAG
CTAGAATCAGTTTGTACTCAATTGCAAGCAGTCTATCCCAATATGTGTGG
CAGCGATGTTGTCAAAAACCACTGTAGTACTTTATGTTCTAAAGGTGTTG
ACCAAAAACTTACTTGTGGTAAACATGTAAAAAAGCCACACACTCGGCGG
CGCCGTATTGTGGGTGGTGTGGTTAGCGATGCCGGAGAATGGCCATGGCA
TATAAGTTTACGAATGGGTGGTAAGCACGTATGTGGCGGATCAATATTGA
CGCCCGAAGTGATAGTAACTGCCGCCCATTGTGTTGATGCAAAATACACA
AGTGAAGATCCCAAGAATTTTGACGTTGCAGCTCAAACGAATTATCATAA
AGAGCCTGGACAGATTGTTCAAGTGAAAAGATTGATTCGACACAAGGAAT
ATGAATTCACTGATCATAAATGGAGGGACTTGTTCTTCGTATATATGACA
AACGCTGCTCTTTTTGTCATTACGTTTCTACCATCCATTTTCTCATCTAC
CATGGTGCAGAAAGCTGAAAAGCTAGAATCAGTTTGTACTCAATTGCAAG
CAGTCTATCCCAATATGTGTGGCAGCGATGTTGTCAAAAACCACTGTAGT
ACTTTATGTTCTAAAGGTGTTGACCAAAAACTTACTTGTGGTAAACATGT
AAAAAAGCCACACACTCGGCGGCGCCGTATTGTGGGTGGTGTGGTTAGCG
ATGCCGGAGAATGGCCATGGCATATAAGTTTACGAATGGGTGGTAAGCAC
GTATGTGGCGGATCAATATTGACGCCCGAAGTGATAGTAACTGCCGCCCA
TTGTGTTGATGCAAAATACACAAGTGAAGATCCCAAGAATTTTGACGTTG
CAGCTCAAACGAATTATCATAAAGAGCCTGGACAGATTGTTCAAGTGAAA
AGATTGATTCGACACAAGGAATATGAATTCACTGATCATAAATGGAGGGA
CTTGTTCTTCGTATATATGACAAACGCTGCTCTTTTTGTCATTACGTTTC
TACCATCCATTTTCTCATCTACCATGGTGCAGAAAGCTGAAAAGCTAGAA
TCAGTTTGTACTCAATTGCAAGCAGTCTATCCCAATATGTGTGGCAGCGA
TGTTGTCAAAAACCACTGTAGTACTTTATGTTCTAAAGGTGTTGACCAAA
AACTTACTTGTGGTAAACATGTAAAAAAGCCACACACTCGGCGGCGCCGT
ATTGTGGGTGGTGTGGTTAGCGATGCCGGAGAATGGCCATGGCATATAAG
TTTACGAATGGGTGGTAAGCACGTATGTGGCGGATCAATATTGACGCCCG
AAGTGATAGTAACTGCCGCCCATTGTGTTGATGCAAAATACACAAGTGAA
GATCCCAAGAATTTTGACGTTGCAGCTCAAACGAATTATCATAAAGAGCC
TGGACAGATTGTTCAAGTGAAAAGATTGATTCGACACAAGGAATATGAAT
TCACTGATCATAAATGGAGGGACTTGTTCTTCGTATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037647XLOC_037647Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059855-exon-scaffold_331-1491911889:1147294..1147433TCONS_00059855-exon-scaffold_331-1491911889:1147294..1147433Clytia hemisphaericaexon
TCONS_00059855-exon-scaffold_331-1510915933:1147294..1147433TCONS_00059855-exon-scaffold_331-1510915933:1147294..1147433Clytia hemisphaericaexon
TCONS_00059855-exon-scaffold_331-1575043694:1147294..1147433TCONS_00059855-exon-scaffold_331-1575043694:1147294..1147433Clytia hemisphaericaexon
TCONS_00059855-exon-scaffold_331-1491911889:1156151..1156267TCONS_00059855-exon-scaffold_331-1491911889:1156151..1156267Clytia hemisphaericaexon
TCONS_00059855-exon-scaffold_331-1510915933:1156151..1156267TCONS_00059855-exon-scaffold_331-1510915933:1156151..1156267Clytia hemisphaericaexon
TCONS_00059855-exon-scaffold_331-1575043694:1156151..1156267TCONS_00059855-exon-scaffold_331-1575043694:1156151..1156267Clytia hemisphaericaexon
TCONS_00059855-exon-scaffold_331-1491911889:1162399..1162496TCONS_00059855-exon-scaffold_331-1491911889:1162399..1162496Clytia hemisphaericaexon
TCONS_00059855-exon-scaffold_331-1510915933:1162399..1162496TCONS_00059855-exon-scaffold_331-1510915933:1162399..1162496Clytia hemisphaericaexon
TCONS_00059855-exon-scaffold_331-1575043694:1162399..1162496TCONS_00059855-exon-scaffold_331-1575043694:1162399..1162496Clytia hemisphaericaexon
TCONS_00059855-exon-scaffold_331-1491911889:1162724..1162846TCONS_00059855-exon-scaffold_331-1491911889:1162724..1162846Clytia hemisphaericaexon
TCONS_00059855-exon-scaffold_331-1510915933:1162724..1162846TCONS_00059855-exon-scaffold_331-1510915933:1162724..1162846Clytia hemisphaericaexon
TCONS_00059855-exon-scaffold_331-1575043694:1162724..1162846TCONS_00059855-exon-scaffold_331-1575043694:1162724..1162846Clytia hemisphaericaexon
TCONS_00059855-exon-scaffold_331-1491911889:1163314..1163505TCONS_00059855-exon-scaffold_331-1491911889:1163314..1163505Clytia hemisphaericaexon
TCONS_00059855-exon-scaffold_331-1510915933:1163314..1163505TCONS_00059855-exon-scaffold_331-1510915933:1163314..1163505Clytia hemisphaericaexon
TCONS_00059855-exon-scaffold_331-1575043694:1163314..1163505TCONS_00059855-exon-scaffold_331-1575043694:1163314..1163505Clytia hemisphaericaexon
TCONS_00059855-exon-scaffold_331-1491911889:1164062..1164220TCONS_00059855-exon-scaffold_331-1491911889:1164062..1164220Clytia hemisphaericaexon
TCONS_00059855-exon-scaffold_331-1510915933:1164062..1164220TCONS_00059855-exon-scaffold_331-1510915933:1164062..1164220Clytia hemisphaericaexon
TCONS_00059855-exon-scaffold_331-1575043694:1164062..1164220TCONS_00059855-exon-scaffold_331-1575043694:1164062..1164220Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059855-proteinTCONS_00059855-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:1147294..1164220 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.341509	0.493177	0	0	0.201494	0.548808	0.970473	0.79406	0.791743	0.721419	0	0	1.18247	1.66834	0.512193	1.26997	1.32907	1.04102	1.12338	3.19075	2.10121	2.52032	1.86537	1.88709	0.797826	1.40381	2.56708	1.32555	0.444608	1.37141
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001254Trypsin_dom
IPR013087Znf_C2H2_type
IPR018114TRYPSIN_HIS
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059855 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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