TCONS_00059848 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059848
Unique NameTCONS_00059848
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1242

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059848 ID=TCONS_00059848|Name=TCONS_00059848|organism=Clytia hemisphaerica|type=transcript|length=1242bp
GATTGGaatgtttctgatttttttctctgacTTTGCTGATAGCTAATAGC
TGAGATATAATAGATTTCCTAGAAAGGNTCTGACTTTGCTGATAGCTTTG
ATAGCTAATAGCTGAGATATAATAGATTTCCTAGAAAGGACATACGTAAC
ATACTAGTAGAGAGGTCGATACCACGAGGAAAGAGAAGTAGTTTCGCCAG
ACTAGTATAAATAGCACCCAAGAATTGCTGATTTTAAACATAGAGAAATT
AGTCGAAATTTGAACTGGTCGAGCGAGGATAGAGAAGTCGTGATGAAGTT
GATAGAATGTATTTTGGTTTTGGCTGtTATGGTCAATACATGCGAAAGTC
GTTTCAAGTTAGTAAAGGTATTACGTAAATTGAATACCGAGTACCAAAGA
ACAAGAGATATTTTATCAAGCAAAGCTTTAGAAGTGGCAATTCTTGGTGA
TGGCAAGAAGATCGATAAACGAATGGCATGTTTAAAGACGATCGAAATAC
CAACTGAAGAAGACATTTTCACCGAAAAACCACCCGCTAAATTGATCGGG
aaaCATTACCTACGATTAAACTTCAATAAGATAGTACTGGAAGTTTTCAA
TAAAGAATTACAGAACGGATTTCCACTCTTGAATACTCTACCCACGGAAg
atggaaaaatagaaaagctgagagaaattcaaaatgaaatccagaAGAGA
TTGAAAAACCAGACCAGCAATATTGAGAAACAACTTGAGtTATTCAAGGA
TGCTGCCAAAATTAATGGGCTTGATATTGCATTGACTGAACAACAagctt
ttaaactgaaaatcaaactacaattcattgaaatgaaaaatgaaaaggaa
tATTCAGAATGTTTTAACGAATTTGCAAGATTACGACAATTCTTCAATAA
TTTACGATACTTTTACGAAGATTTTATTGCGGATGGCAAAGTTCGTATCA
GACAATGCCGGTTATTTGGTTGATGAGAAAGCGACTTGTGATATTTTGTA
CATTGTATCTTTTAAGGATTTTTagtattatttattttataggGTAATTT
ATAATTAAAGTCTGTTCGTCTGACCTCTTGTGCACACTTAtagtgaatag
actttaggaatcataatttaggtaatataatataatatttataggagaaa
atagaaaaataaaattcgttTTTAACATGTATCTGGAAGAGCAGAGCAGA
GCAGAGCAAAGCACATTTTGATGTAATACTCTGCTCCAGGAC
Run BLAST on NCBI

transcript from alignment at scaffold_331:925144..929876+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059848 ID=TCONS_00059848|Name=TCONS_00059848|organism=Clytia hemisphaerica|type=transcript|length=4733bp|location=Sequence derived from alignment at scaffold_331:925144..929876+ (Clytia hemisphaerica)
GATTGGaatgtttctgatttttttctctgacTTTGCTGATAGCTAATAGC
TGAGATATAATAGATTTCCTAGAAAGGNTCTGACTTTGCTGATAGCTTTG
ATAGCTAATAGCTGAGATATAATAGATTTCCTAGAAAGGACATACGTAAC
ATACTAGTAGAGAGGTCGATACCACGAGGAAAGAGAAGTAGTTTCGCCAG
ACTAGTATAAATAGCACCCAAGAATTGCTGATTTTAAACATAGAGAAATT
AGTCGAAATTTGAACTGGTCGAGCGAGGATAGAGAAGTCGTGATGAAGTT
GATAGAATGTATTTTGGTTTTGGCTGGTGAGTTTGGTTTTGAATTGTTTC
TCTGAAGTAGGAATAATAGGTCGTGTATTCTTTGTGACAGGAGAAGACAT
TTGATGTTTTTGACGAGAGGGTAGCAATGTAATGTTACTTCGGTCTTGTG
TAGCCTAACAAAGTCAACTCCGCCTTACCAAAATGACGGATGCACCCTTC
CCTCATGTATCGTCAATCTGACATATATTTATttagcagacctatactac
ctggggttttgtagaggtctgcgattcagacttaagatattttaaaattg
gGTTGGTATATTGTGCGACCCAAtaacccgaaggctcctctttcgatagc
tatctaccctcGAAGGCtttctcacttttttttgtATGATTCAACGCCCT
CTGCTGCCATCTTTTCCGTGCCTTTTTCCGTATTACCAAAAGGCTGGACA
AATGATAAAGTCGCATGGCCCCCCTCGTATACTAAGACAAGCACTATGat
attttcgtttattttctttcttcagtTATGGTCAATACATGCGAAAGTCG
TTTCAAGTTAGTAAAGGTATTACGTAAATTGAATACCGAGTACCAAAGAA
CAAGAGATATTTTATCAAGCAAAGCTTTAGAAGTGGTAAGTGAAATACCA
TTTAGTAGTCTTCAAATGCCGTGGTAACTTCTTGCTAGATTTTCTACAAA
ATCAGTCGATTCACTTAAAGGAAAATCATCACAGCCGNTTAGATTTTCTA
CAAAATCAATCGATTCACTTAAAGGAAATCATTTAACGCATCATACCTAC
AATTTGCTTACACGGtgttttaaaaaaagaagaactcTTCCTCCCGTGCC
AAGCGAACACAAATTGCTTTGTCAATTCTGCTTCATCAGCATAAAGGCGA
GCCCCTTGTTATATCGTAAAAAAGAATAAACTTCAAATAAGTGAATTGAT
ACCGAAGCATGGTGGGTTCGGGTAAATGGAGTCCGTTGACTTGCCATTGA
CCTTTttaaatatttggaaaaatctCTAAAAGGTCGCAAATTCACTCAGC
TTTCAAAAGTATATCTGAAGGACTGACTTTTCGGTACCTTTTACTACTTT
TCATCAGGGAGCATTTGTTGAAAACTATATGACAGGGGTCCATCcctttt
tgatagaatttcaTATCTAACAGGGTCTTTTTTTTCGATTCTTACCCTCA
TCTAGATTTGTGACTTCTAAAAAACCATAgacttctgctcatcctctagt
gAAAAGATTTCTTATATAGGAAGTAAATCTAGAGGTCTGTGATTTAGACT
CCAAAAACCATTGTGAGGGGTTTGTCCTGTTAGTCGGCAAGGGTAGCGCA
TGCTTTTACTGCTGTAAGCGATTCCTGATGTTAGCTTCTCTAAAAAAGAG
GCTTGGTTTAAATTATAACATGGTTAAAatactaaaaactaattacttGT
TTCAAAAGTTCCACGCTGTACAATTTAGGACCATCTTAGATTGACCCATT
ATAACTAATTTGATGTAATCATGCGGCATCATAAGTAATATATATCTATC
TAATTAGTCTAGAAACATAGTTCCTTCTCTCTTTCTAAACTTTTTCTATT
TATATCTTTTACCGTTGGAGACAAGGCAGAGAGAgttattttttatgctt
tataGCTTTTCTTCTTTTAACTCAGTGCAAGATTCTCATAATCCAACAAG
CTTCTACATACTACATACACTTTCACATAAATAAGCAATTCTAGCATATT
ACCCATCAAActataaacctttttttttttttaaagtggtcCCTCTGTGT
TGGAGCTATCAATCAATCttgtacccagagccacttgctctactttttgg
tttttctaatAAATGTTGGTAAAATCCTTTCGGactcagagttaaaaatc
tacccttcgaacctactttagagcacttacaaatcgattgtggtttcaaa
acaccccggtgaatttcccttttgtgccaaatatTTTGTCCCTGATTGTG
gagtttttacaagctcttatgtgatttggttggtcgttaagatgtaataa
atacaattttattacattttctaaagaacgcgtcatctatattacttcaa
atgaccaattagtgaagtatcttataaaaactccagctcgtCGCTTTTTT
CTCTACAGGCAATTCTTGGTGATGGCAAGAAGATCGATAAACGAATGGCA
TGTTTAAAGACGATCGAAATACCAACTGAAGAAGACATTTTCACCGAAAA
ACCACCCGCTAAATTGATCGGGGTAAGTTTTTATCCTCGTAAACAGGCTT
TTTAGTGCCGTTAACTAGCGTCGTTGTATCGTTACTTTGACAATCTTACA
AAAGTTTAGACTGAATTAATAAAGTATAGCCGAAAAGTAGATTGTAAATT
AAAGTACACTCCTTTAGAAGATATTTGCTCTTCCAAAAGGGTGTTTTAAA
TTACATCGGAATAATCTTTTTCAAGAATACGAAAATGATTGCCAAATTCA
TATAAGAAATCTGTTAAAAAATGGTGTATCCAGTCAGACGATAGACTACt
gctggctgaactttgctttttggtgatttttgatGAGGCTGAGTTCACCG
CCattcagtctatcaaaaagctttaattggaccccgggctagtcaaaaaa
aatgaaaacatagtttATAATAAGGAATATTATCTAGGCCACGTGGATAT
AAAAATACTTTAACAGCAATATTGATGGATATCTTTCCTATCAGCAAAAT
GATAATCACCCAATTTCCGCTCTCGTGTAGCGTGCAGTATAAAAACAATT
TCCGGAGGGAGCTTTCCCTTGCTTTTTCTTCACTGAGggagaaaaaaaac
tgaaaaaaataatatgctGAGTTTGTTACTTTCGTTAAACACAGGAAATC
GGTGATCGTAATAACTGCCAAACATCCTGCTATCCTTTTTGGCATTTCgg
ttttaagcttttttctGATTCGGAACATTTTTCCTCAATGGGGGATAAGA
ATCCCTATTGAAATCCcgatggggataaaaattctattgtttaaaagtta
aaaaatccagttggAATGGTTTcggatttttaaacatttaattccaagtg
gggataaaatataagtcaatttcccagtggggctaaaattccagggtatt
ttcctatCGGGTACGAAATTTTTACTGGGGTCCCAGtggatctgtgacac
aggggtgtatgagACAAGCATGAactaataattatttttcttttagaaaC
ATTACCTACGATTAAACTTCAATAAGATAGTACTGGAAGTTTTCAATAAA
GAATTACAGAACGGATTTCCACTCTTGAATACTCTACCCACGGAAgatgg
aaaaatagaaaagctgagagaaattcaaaatgaaatccagaAGAGATTGA
AAAACCAGACCAGCAATATTGAGAAACAACTTGAGGTTGGTACTTTATTA
CTCATtctaaaaaatggttttttcctcaatttgattttgagcACATATCA
TTAAAATGCATCCTTTTTAGCCTAAACCGTGTAACTAAGTCTCAAAGGAC
AGCCAGCCTATTCCAAGCCATTAATTACAAaggaacacccctgtctcaca
gccccagtggaatTTTTTACCTCATTGtggataaaaactcctattgaaat
cccaatggggatagaaattctattgtttcaaggttaaaaaatccaatggG
GGATGgatttggagtgcaatttttaaacagtCCAGTGGGACTAAAATTCA
AGAGTATTTTCCCaccagggaagaaatttttgttaaattttccagtggat
tGGGGTTCCCAACGGGTCTGAGACACAGGGGTAGGGGTGTAAAGGATAAA
CAACCGAGTATTTGGAAAGTTATACTTTAGAAATTGTATATTTATGGTCC
TAAAAATCGttatttccttcatttttttagtTATTCAAGGATGCTGCCAA
AATTAATGGGCTTGATATTGCATTGACTGAACAACAagcttttaaactga
aaatcaaactacaattcattgaaatgaaaaatgaaaaggaatATTCAGAA
TGTTTTAACGAATTTGCAAGATTACGACAATTCTTCAATAATTTACGATA
CTTTTACGAAGATTTTATTGCGGATGGCAAAGTTCGTATCAGACAATGCC
GGTTATTTGGTTGATGAGAAAGCGACTTGTGATATTTTGTACATTGTATC
TTTTAAGGATTTTTagtattatttattttataggGTAATTTATAATTAAA
GTCTGTTCGTCTGACCTCTTGTGCACACTTAtagtgaatagactttagga
atcataatttaggtaatataatataatatttataggagaaaatagaaaaa
taaaattcgttTTTAACATGTATCTGGAAGAGCAGAGCAGAGCAGAGCAA
AGCACATTTTGATGTAATACTCTGCTCCAGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037641XLOC_037641Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059848-exon-scaffold_331-1491911889:925144..925469TCONS_00059848-exon-scaffold_331-1491911889:925144..925469Clytia hemisphaericaexon
TCONS_00059848-exon-scaffold_331-1510915933:925144..925469TCONS_00059848-exon-scaffold_331-1510915933:925144..925469Clytia hemisphaericaexon
TCONS_00059848-exon-scaffold_331-1575043694:925144..925469TCONS_00059848-exon-scaffold_331-1575043694:925144..925469Clytia hemisphaericaexon
TCONS_00059848-exon-scaffold_331-1491911889:925969..926078TCONS_00059848-exon-scaffold_331-1491911889:925969..926078Clytia hemisphaericaexon
TCONS_00059848-exon-scaffold_331-1510915933:925969..926078TCONS_00059848-exon-scaffold_331-1510915933:925969..926078Clytia hemisphaericaexon
TCONS_00059848-exon-scaffold_331-1575043694:925969..926078TCONS_00059848-exon-scaffold_331-1575043694:925969..926078Clytia hemisphaericaexon
TCONS_00059848-exon-scaffold_331-1491911889:927602..927715TCONS_00059848-exon-scaffold_331-1491911889:927602..927715Clytia hemisphaericaexon
TCONS_00059848-exon-scaffold_331-1510915933:927602..927715TCONS_00059848-exon-scaffold_331-1510915933:927602..927715Clytia hemisphaericaexon
TCONS_00059848-exon-scaffold_331-1575043694:927602..927715TCONS_00059848-exon-scaffold_331-1575043694:927602..927715Clytia hemisphaericaexon
TCONS_00059848-exon-scaffold_331-1491911889:928690..928878TCONS_00059848-exon-scaffold_331-1491911889:928690..928878Clytia hemisphaericaexon
TCONS_00059848-exon-scaffold_331-1510915933:928690..928878TCONS_00059848-exon-scaffold_331-1510915933:928690..928878Clytia hemisphaericaexon
TCONS_00059848-exon-scaffold_331-1575043694:928690..928878TCONS_00059848-exon-scaffold_331-1575043694:928690..928878Clytia hemisphaericaexon
TCONS_00059848-exon-scaffold_331-1491911889:929374..929876TCONS_00059848-exon-scaffold_331-1491911889:929374..929876Clytia hemisphaericaexon
TCONS_00059848-exon-scaffold_331-1510915933:929374..929876TCONS_00059848-exon-scaffold_331-1510915933:929374..929876Clytia hemisphaericaexon
TCONS_00059848-exon-scaffold_331-1575043694:929374..929876TCONS_00059848-exon-scaffold_331-1575043694:929374..929876Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:925144..929876 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0380443	0.00288528	0	0.278604	0.157007	0.43412	1.29246	0.591523	0	18.0106	2.91768	1.57965	2.54294	1.72741	5.06325	2.4826	3.82039	0	0	0.82695	0.206942	2.24099	0.990386	1.78953	3.20011	0.0762392	0.0776756
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059848 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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