TCONS_00059829 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059829
Unique NameTCONS_00059829
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1579

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059829 ID=TCONS_00059829|Name=TCONS_00059829|organism=Clytia hemisphaerica|type=transcript|length=1579bp
CGATAACGGTGAATTTATTTTGACTGAAACTTTCAGGTGAACGCAAAACG
GATGGTCTGTagtaaaaagttcaaaaattggcACAAGCAAGAAGGCGAGA
GAAGCGTGCaagagaatttttaaagactCATTGTTATCATTGTTAGAATA
TGTATTTCTTTTAATGTTTTAAGCAATTTCCTGTCACATTGATTATGAAT
CCTCTCACAAATGTACGAAACGTGAAGAAATTGAATGAGCAAGATTtgaa
aaatgggatttttgacCACACCAAAACCTGGCACTCTCAATACAAAGATA
GTGCCTACATTTTTATAGGGGGCCTGCCATATGACTTGACGGAAGGTGAC
GTTTTGTGCGTGTTTTCTCAGTATGGGGAAATTGTTAACATTAATATGGT
GAGGGATAAAAAGACTGGCAAAATCAAAGGATATGGTTTTATTTGTTATG
AAGATCAAAGAAGTACGATATTGGCCGTTGATAATTTAAATGGCATAAAG
CTTGGTGGGAGAACCATTCGAGTAGATCACGTTTCAGAATATCGCATCCC
AAAGAGTGACGAGAAGGGTGAAGATGGGAAATATAAAGACAAAATAGAAA
CAGGGTGTGCACCCAAGACGCCTTCCCCGGCCCCGTCAAGTGACGAAGAG
TTATCGGACTATAAacttgagaaaaagaaaaagaagaaagagaagaaaaa
gaataaGAAACTGAAGAAAGGAGCTGACAGAGACGATGAGCAGAGATATA
ATGACAAATCAAATGGTGAAAAGAAACGAGATGATCTAAGCCCACCTTAT
AAGAAATACCATAAAGACAGATTAAGGGATTATTCTTTAGATAAAGAAAG
GTCCAAGAGGGATAAATCTCGTTCTGTTTCACCTGAAAGACAACATAGAG
AGGGACATTACAAGGATGCACGCAAAAATGAATCAAGTTCCTCATACAAG
AAATATCATAGAGATAGATCGCGTGATGATTCCCCACCTATCTCACAAAA
GAAAAGACACGCTTCACCATCACCCTCGGGGAAGAAAAGACACGATTTCC
GCTCACCATCCCCTGTACGAAAAAGAAGACACGATTCACGATCACTTTCA
CCAAGTGATAGGAGAATGAGAGATAGAAATAGTAAAAGATCANCTGTACG
AAAAGGAAGACACGATTCACGATCACTTTCACCAAGTGATAGGAGAATGA
GAGATAGAAATAGTAAAAGATCACCATCGCCTGATAAACGGAGAAGGAGT
CGATCACCTGTAGGTCGAGATCGAGGTAGAAGGTGATTTAAAATCTTCGT
TTTGGAGGAAATAACTGGAAATAACGTTTGATCGTCAGACTAAATCCTAT
CTGGCAAGATTTTGTATGTTATACATAGAAAGATTATGTGtattatattt
aaatttttaaaatcaaaaaggcTGTGGTTTTGACTTTGATTCCAACAGAA
ATTCTTCCATATCTTAAGGGATTTAACTGTTTCTTGACTGACtgagaatg
ataaaaaaaactaacgtgtaaatgtatatattttttttggaatgatttat
ttttattctGAAAGATCGGTTTAGTTTAT
Run BLAST on NCBI

protein sequence of TCONS_00059829-protein

>TCONS_00059829-protein ID=TCONS_00059829-protein|Name=TCONS_00059829-protein|organism=Clytia hemisphaerica|type=polypeptide|length=363bp
MNPLTNVRNVKKLNEQDLKNGIFDHTKTWHSQYKDSAYIFIGGLPYDLTE
GDVLCVFSQYGEIVNINMVRDKKTGKIKGYGFICYEDQRSTILAVDNLNG
IKLGGRTIRVDHVSEYRIPKSDEKGEDGKYKDKIETGCAPKTPSPAPSSD
EELSDYKLEKKKKKKEKKKNKKLKKGADRDDEQRYNDKSNGEKKRDDLSP
PYKKYHKDRLRDYSLDKERSKRDKSRSVSPERQHREGHYKDARKNESSSS
YKKYHRDRSRDDSPPISQKKRHASPSPSGKKRHDFRSPSPVRKRRHDSRS
LSPSDRRMRDRNSKRSXVRKGRHDSRSLSPSDRRMRDRNSKRSPSPDKRR
RSRSPVGRDRGRR
Run BLAST on NCBI

transcript from alignment at scaffold_331:784218..788206+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059829 ID=TCONS_00059829|Name=TCONS_00059829|organism=Clytia hemisphaerica|type=transcript|length=3989bp|location=Sequence derived from alignment at scaffold_331:784218..788206+ (Clytia hemisphaerica)
CGATAACGGTGAATTTATTTTGACTGAAACTTTCAGGTGAACGCAAAACG
GATGGTCTGTagtaaaaagttcaaaaattggcACAAGCAAGAAGGCGAGA
GAAGCGTGCaagagaatttttaaagactCATTGTTATCATTGTTAGAATA
TGTATTTCTTTTAATGTTTTAAGCAATTTCCTGTCACATTGATTATGAAT
CCTCTCACGTAAGTCAATATTGTATTTAGACAAAAGATTTAATGTTATTA
AGCGATTCTGACACAATACTTTTTTCCAAACAAACATGCATTGGAAATAc
cgtgttttttgttttttgctcTTAAGCTCTTAAGCTCTCACATTCTTTTG
ATGTCCCCTGACATCTAATAATGAGGCTAGGCTAGATTTGCCTCTTTTCT
CTTTCCtaatctaaaaattaaaatatttacaatcaaacatttggcgagtt
cctgtccTGCATCCTGTAATATGCCCAGACGATCATTTTTGATCAAAGTG
Ccaagtatttttcaaaatttcgaaaattgagttttttgttattttgaaat
ttgaaggtATGGAATTGGAAAATGTCCAGACCTTGGTATCAAAAGTGCCA
ACTCAATTATTTGTTTTTAATCCAAGTCTATAAAGCATGTAGTTTACAAA
TGTTTAATTGCCGTGTCGTTTGTATTTTGTAGCCTTCCGTGGAATTAACA
CACATTTGGAAGTTCTGCCCTACCCTAAAATGTCAGGACAATAAAACTCT
TAAGATAGGACCACACCATAAAGGGGTAACATTTAAAGGCTCTGCTTTTG
ACTAAAACGTTATTTGTTACTAAACCATATTATGCAAATTGTGATAAGGA
TGCGACTTTCATAGGACAGTTTAGTTGAGGATGATTTTGATCCCATCAAT
CATACCGTTAAACTCCCCCTAACATCCGGATACTTTAACTAAATTCAtac
atttgattttcaaatttcaatacaaGCATAAAGATTAAAGTTTGAAATCA
TCAATAATTGTTTTGCCACTTTTGATAcaaggttggcaaacgatatcatc
caccaggatgcatcctttcttattttccccctattttctactttcctatc
ttctatactgattttctgactttctctagtgtttctaactgttttctaag
tatttttctgaaatttgcccgtaccggtgaaataggtctccgaccccggc
tcgaaccaccaaatacaagcaaccttggtttacaaacccaatgcctaacc
gctagcgccaacgagacacggcagaaTGCTGTCATTCACTAATACTTAta
gtgtgtaatttacagacctttattaaggaagctcccaaccctaccaatgc
ccctacaaggatccctacgggatcctaagttaagtcacagggtacggatg
cccctaagaaggccttcggccttatattgtgactctcgagctccaacccT
AACCCTAACTGATAATAACCGAACCCCCGTCTAGGTCCGTAGATTGAAAA
ATTTCACTTGCATCCTGGTGGATGATATCGTCTGCCAACCTTGATACAAG
GACCTTGTCATCAAATTTGACAGAATTGCAAATTTAGGTgatctttcaat
tttcaaattttgaaattcatgaaatttctcatttttttaattttcaaaat
ttagaaaaatacttCCTTGGCACTTTCAATACTTCCATTACTTTCGATAC
TTCCATTGACTTGTCGTCAATTTTGACAGAATTGCAAATTTAGGTGATCT
ttcaattttcgaattttgaaatttatgaaatttaaaattactcatttttt
tcaattttcaaaatttagaaaaatacttGGTGCTTTCAATCCATTTAATG
AATATGACATCTGTTTACATTCTTGTTATTTAGAAATGTACGAAACGTGA
AGAAATTGAATGAGCAAGATTtgaaaaatgggatttttgacCACACCAAA
ACCTGGCACTCTCAATACAAAGATAGTGCCTACATTTTTATAGGTATAAC
CCTCTCAGTAGCATCCAGAAAAACCAACTCTTATTAATGCTCCAAAATCT
TTAGGTATGGTTATTACCAAGAATGCATCATTCAATGCGATGGACTAATG
AACTAAAAATGTGTTGTGATATTACTTGCTTGAACTAGACATATTTTGGA
TGTGGAATCTTTTCtcgaaaatgttttatttacaaTTTTAGGGGGCCTGC
CATATGACTTGACGGAAGGTGACGTTTTGTGCGTGTTTTCTCAGTAAGTT
TCATTCCCTCAAATAAAATGTGTATAATGAGTATAAGTAGCAATTCGAAA
GAGTTATGTATGTTGTTGCTTTTTTAGTATTCCTGAAAATCGTTTTTCGT
CATTCTTCTAAGATATTGATAATATTTTTGCATAGTGATAATAAATTTCT
GTCAATTTTCTGCAGCATTCTTAGAAATCCAGTGATTGGAATGCTTCACC
TCACGGATGAGTCAAGCCAAGGAATGGTTCATCATCTGATATCATTGAAT
AGAAACCTCAATCTGGTATTGACTTTATTTTGCAAAACCTCTTTGTTTTA
GGTATGGGGAAATTGTTAACATTAATATGGTGAGGGATAAAAAGACTGGC
AAAATCAAAGGATATGGTTTTATTTGTTATGAAGATCAAAGAAGTACGAT
ATTGGCCGTTGATAATTTAAATGGCATAAAGGTTGCTTTTGGTTTGTTCA
TAAGTCTATGGTTTGTTTATCTGTACCAAAATGAGTGAATTTAACTTATC
caagtttaaaaagaaaaatgatgaaaattgcTTTAGAGTTGTTTATCTGT
TACAATGTTTGTCTTCCATTTTTATCCCAATTGACACAACTTTTACATAA
AATTAATCTGCAACAGAAAAATACTtatctttatttgatttttctttgaa
attccaATAGCTTGGTGGGAGAACCATTCGAGTAGATCACGTTTCAGAAT
ATCGCATCCCAAAGAGTGACGAGAAGGGTGAAGATGGGAAATATAAAGAC
AAAATAGAAACAGGGTGTGCACCCAAGACGCCTTCCCCGGCCCCGTCAAG
TGACGAAGAGTTATCGGACTATAAacttgagaaaaagaaaaagaagaaag
agaagaaaaagaataaGAAACTGAAGAAAGGAGCTGACAGAGACGATGAG
CAGAGATATAATGACAAATCAAATGGTGAAAAGAAACGAGATGATCTAAG
CCCACCTTATAAGAAATACCATAAAGACAGATTAAGGGATTATTCTTTAG
ATAAAGAAAGGTCCAAGAGGGATAAATCTCGTTCTGTTTCACCTGAAAGA
CAACATAGAGAGGGACATTACAAGGATGCACGCAAAAATGAATCAAGTTC
CTCATACAAGAAATATCATAGAGATAGATCGCGTGATGATTCCCCACCTA
TCTCACAAAAGAAAAGACACGCTTCACCATCACCCTCGGGGAAGAAAAGA
CACGATTTCCGCTCACCATCCCCTGTACGAAAAAGAAGACACGATTCACG
ATCACTTTCACCAAGTGATAGGAGAATGAGAGATAGAAATAGTAAAAGAT
CANCTGTACGAAAAGGAAGACACGATTCACGATCACTTTCACCAAGTGAT
AGGAGAATGAGAGATAGAAATAGTAAAAGATCACCATCGCCTGATAAACG
GAGAAGGAGTCGATCACCTGTAGGTCGAGATCGAGGTAGAAGGTGATTTA
AAATCTTCGTTTTGGAGGAAATAACTGGAAATAACGTTTGATCGTCAGAC
TAAATCCTATCTGGCAAGATTTTGTATGTTATACATAGAAAGATTATGTG
tattatatttaaatttttaaaatcaaaaaggcTGTGGTTTTGACTTTGAT
TCCAACAGAAATTCTTCCATATCTTAAGGGATTTAACTGTTTCTTGACTG
ACtgagaatgataaaaaaaactaacgtgtaaatgtatatattttttttgg
aatgatttatttttattctGAAAGATCGGTTTAGTTTAT

Coding sequence (CDS) from alignment at scaffold_331:784218..788206+

>TCONS_00059829 ID=TCONS_00059829|Name=TCONS_00059829|organism=Clytia hemisphaerica|type=CDS|length=5460bp|location=Sequence derived from alignment at scaffold_331:784218..788206+ (Clytia hemisphaerica)
ATGAATCCTCTCACAAATGTACGAAACGTGAAGAAATTGAATGAGCAAGA
TTtgaaaaatgggatttttgacCACACCAAAACCTGGCACTCTCAATACA
AAGATAGTGCCTACATTTTTATAGGGGGCCTGCCATATGACTTGACGGAA
GGTGACGTTTTGTGCGTGTTTTCTCAGTATGGGGAAATTGTTAACATTAA
TATGGTGAGGGATAAAAAGACTGGCAAAATCAAAGGATATGGTTTTATTT
GTTATGAAGATCAAAGAAGTACGATATTGGCCGTTGATAATTTAAATGGC
ATAAAGCTTGGTGGGAGAACCATTCGAGTAGATCACGTTTCAGAATATCG
CATCCCAAAGAGTGACGAGAAGGGTGAAGATGGGAAATATAAAGACAAAA
TAGAAACAGGGTGTGCACCCAAGACGCCTTCCCCGGCCCCGTCAAGTGAC
GAAGAGTTATCGGACTATAAacttgagaaaaagaaaaagaagaaagagaa
gaaaaagaataaGAAACTGAAGAAAGGAGCTGACAGAGACGATGAGCAGA
GATATAATGACAAATCAAATGGTGAAAAGAAACGAGATGATCTAAGCCCA
CCTTATAAGAAATACCATAAAGACAGATTAAGGGATTATTCTTTAGATAA
AGAAAGGTCCAAGAGGGATAAATCTCGTTCTGTTTCACCTGAAAGACAAC
ATAGAGAGGGACATTACAAGGATGCACGCAAAAATGAATCAAGTTCCTCA
TACAAGAAATATCATAGAGATAGATCGCGTGATGATTCCCCACCTATCTC
ACAAAAGAAAAGACACGCTTCACCATCACCCTCGGGGAAGAAAAGACACG
ATTTCCGCTCACCATCCCCTGTACGAAAAAGAAGACACGATTCACGATCA
CTTTCACCAAGTGATAGGAGAATGAGAGATAGAAATAGTAAAAGATCANC
TGTACGAAAAGGAAGACACGATTCACGATCACTTTCACCAAGTGATAGGA
GAATGAGAGATAGAAATAGTAAAAGATCACCATCGCCTGATAAACGGAGA
AGGAGTCGATCACCTGTAGGTCGAGATCGAGGTAGAAGGTGAATGAATCC
TCTCACAAATGTACGAAACGTGAAGAAATTGAATGAGCAAGATTtgaaaa
atgggatttttgacCACACCAAAACCTGGCACTCTCAATACAAAGATAGT
GCCTACATTTTTATAGGGGGCCTGCCATATGACTTGACGGAAGGTGACGT
TTTGTGCGTGTTTTCTCAGTATGGGGAAATTGTTAACATTAATATGGTGA
GGGATAAAAAGACTGGCAAAATCAAAGGATATGGTTTTATTTGTTATGAA
GATCAAAGAAGTACGATATTGGCCGTTGATAATTTAAATGGCATAAAGCT
TGGTGGGAGAACCATTCGAGTAGATCACGTTTCAGAATATCGCATCCCAA
AGAGTGACGAGAAGGGTGAAGATGGGAAATATAAAGACAAAATAGAAACA
GGGTGTGCACCCAAGACGCCTTCCCCGGCCCCGTCAAGTGACGAAGAGTT
ATCGGACTATAAacttgagaaaaagaaaaagaagaaagagaagaaaaaga
ataaGAAACTGAAGAAAGGAGCTGACAGAGACGATGAGCAGAGATATAAT
GACAAATCAAATGGTGAAAAGAAACGAGATGATCTAAGCCCACCTTATAA
GAAATACCATAAAGACAGATTAAGGGATTATTCTTTAGATAAAGAAAGGT
CCAAGAGGGATAAATCTCGTTCTGTTTCACCTGAAAGACAACATAGAGAG
GGACATTACAAGGATGCACGCAAAAATGAATCAAGTTCCTCATACAAGAA
ATATCATAGAGATAGATCGCGTGATGATTCCCCACCTATCTCACAAAAGA
AAAGACACGCTTCACCATCACCCTCGGGGAAGAAAAGACACGATTTCCGC
TCACCATCCCCTGTACGAAAAAGAAGACACGATTCACGATCACTTTCACC
AAGTGATAGGAGAATGAGAGATAGAAATAGTAAAAGATCANCTGTACGAA
AAGGAAGACACGATTCACGATCACTTTCACCAAGTGATAGGAGAATGAGA
GATAGAAATAGTAAAAGATCACCATCGCCTGATAAACGGAGAAGGAGTCG
ATCACCTGTAGGTCGAGATCGAGGTAGAAGGTGAATGAATCCTCTCACAA
ATGTACGAAACGTGAAGAAATTGAATGAGCAAGATTtgaaaaatgggatt
tttgacCACACCAAAACCTGGCACTCTCAATACAAAGATAGTGCCTACAT
TTTTATAGGGGGCCTGCCATATGACTTGACGGAAGGTGACGTTTTGTGCG
TGTTTTCTCAGTATGGGGAAATTGTTAACATTAATATGGTGAGGGATAAA
AAGACTGGCAAAATCAAAGGATATGGTTTTATTTGTTATGAAGATCAAAG
AAGTACGATATTGGCCGTTGATAATTTAAATGGCATAAAGCTTGGTGGGA
GAACCATTCGAGTAGATCACGTTTCAGAATATCGCATCCCAAAGAGTGAC
GAGAAGGGTGAAGATGGGAAATATAAAGACAAAATAGAAACAGGGTGTGC
ACCCAAGACGCCTTCCCCGGCCCCGTCAAGTGACGAAGAGTTATCGGACT
ATAAacttgagaaaaagaaaaagaagaaagagaagaaaaagaataaGAAA
CTGAAGAAAGGAGCTGACAGAGACGATGAGCAGAGATATAATGACAAATC
AAATGGTGAAAAGAAACGAGATGATCTAAGCCCACCTTATAAGAAATACC
ATAAAGACAGATTAAGGGATTATTCTTTAGATAAAGAAAGGTCCAAGAGG
GATAAATCTCGTTCTGTTTCACCTGAAAGACAACATAGAGAGGGACATTA
CAAGGATGCACGCAAAAATGAATCAAGTTCCTCATACAAGAAATATCATA
GAGATAGATCGCGTGATGATTCCCCACCTATCTCACAAAAGAAAAGACAC
GCTTCACCATCACCCTCGGGGAAGAAAAGACACGATTTCCGCTCACCATC
CCCTGTACGAAAAAGAAGACACGATTCACGATCACTTTCACCAAGTGATA
GGAGAATGAGAGATAGAAATAGTAAAAGATCANCTGTACGAAAAGGAAGA
CACGATTCACGATCACTTTCACCAAGTGATAGGAGAATGAGAGATAGAAA
TAGTAAAAGATCACCATCGCCTGATAAACGGAGAAGGAGTCGATCACCTG
TAGGTCGAGATCGAGGTAGAAGGTGAATGAATCCTCTCACAAATGTACGA
AACGTGAAGAAATTGAATGAGCAAGATTtgaaaaatgggatttttgacCA
CACCAAAACCTGGCACTCTCAATACAAAGATAGTGCCTACATTTTTATAG
GGGGCCTGCCATATGACTTGACGGAAGGTGACGTTTTGTGCGTGTTTTCT
CAGTATGGGGAAATTGTTAACATTAATATGGTGAGGGATAAAAAGACTGG
CAAAATCAAAGGATATGGTTTTATTTGTTATGAAGATCAAAGAAGTACGA
TATTGGCCGTTGATAATTTAAATGGCATAAAGCTTGGTGGGAGAACCATT
CGAGTAGATCACGTTTCAGAATATCGCATCCCAAAGAGTGACGAGAAGGG
TGAAGATGGGAAATATAAAGACAAAATAGAAACAGGGTGTGCACCCAAGA
CGCCTTCCCCGGCCCCGTCAAGTGACGAAGAGTTATCGGACTATAAactt
gagaaaaagaaaaagaagaaagagaagaaaaagaataaGAAACTGAAGAA
AGGAGCTGACAGAGACGATGAGCAGAGATATAATGACAAATCAAATGGTG
AAAAGAAACGAGATGATCTAAGCCCACCTTATAAGAAATACCATAAAGAC
AGATTAAGGGATTATTCTTTAGATAAAGAAAGGTCCAAGAGGGATAAATC
TCGTTCTGTTTCACCTGAAAGACAACATAGAGAGGGACATTACAAGGATG
CACGCAAAAATGAATCAAGTTCCTCATACAAGAAATATCATAGAGATAGA
TCGCGTGATGATTCCCCACCTATCTCACAAAAGAAAAGACACGCTTCACC
ATCACCCTCGGGGAAGAAAAGACACGATTTCCGCTCACCATCCCCTGTAC
GAAAAAGAAGACACGATTCACGATCACTTTCACCAAGTGATAGGAGAATG
AGAGATAGAAATAGTAAAAGATCANCTGTACGAAAAGGAAGACACGATTC
ACGATCACTTTCACCAAGTGATAGGAGAATGAGAGATAGAAATAGTAAAA
GATCACCATCGCCTGATAAACGGAGAAGGAGTCGATCACCTGTAGGTCGA
GATCGAGGTAGAAGGTGAATGAATCCTCTCACAAATGTACGAAACGTGAA
GAAATTGAATGAGCAAGATTtgaaaaatgggatttttgacCACACCAAAA
CCTGGCACTCTCAATACAAAGATAGTGCCTACATTTTTATAGGGGGCCTG
CCATATGACTTGACGGAAGGTGACGTTTTGTGCGTGTTTTCTCAGTATGG
GGAAATTGTTAACATTAATATGGTGAGGGATAAAAAGACTGGCAAAATCA
AAGGATATGGTTTTATTTGTTATGAAGATCAAAGAAGTACGATATTGGCC
GTTGATAATTTAAATGGCATAAAGCTTGGTGGGAGAACCATTCGAGTAGA
TCACGTTTCAGAATATCGCATCCCAAAGAGTGACGAGAAGGGTGAAGATG
GGAAATATAAAGACAAAATAGAAACAGGGTGTGCACCCAAGACGCCTTCC
CCGGCCCCGTCAAGTGACGAAGAGTTATCGGACTATAAacttgagaaaaa
gaaaaagaagaaagagaagaaaaagaataaGAAACTGAAGAAAGGAGCTG
ACAGAGACGATGAGCAGAGATATAATGACAAATCAAATGGTGAAAAGAAA
CGAGATGATCTAAGCCCACCTTATAAGAAATACCATAAAGACAGATTAAG
GGATTATTCTTTAGATAAAGAAAGGTCCAAGAGGGATAAATCTCGTTCTG
TTTCACCTGAAAGACAACATAGAGAGGGACATTACAAGGATGCACGCAAA
AATGAATCAAGTTCCTCATACAAGAAATATCATAGAGATAGATCGCGTGA
TGATTCCCCACCTATCTCACAAAAGAAAAGACACGCTTCACCATCACCCT
CGGGGAAGAAAAGACACGATTTCCGCTCACCATCCCCTGTACGAAAAAGA
AGACACGATTCACGATCACTTTCACCAAGTGATAGGAGAATGAGAGATAG
AAATAGTAAAAGATCANCTGTACGAAAAGGAAGACACGATTCACGATCAC
TTTCACCAAGTGATAGGAGAATGAGAGATAGAAATAGTAAAAGATCACCA
TCGCCTGATAAACGGAGAAGGAGTCGATCACCTGTAGGTCGAGATCGAGG
TAGAAGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037632XLOC_037632Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059829-exon-scaffold_331-1491911889:784218..784425TCONS_00059829-exon-scaffold_331-1491911889:784218..784425Clytia hemisphaericaexon
TCONS_00059829-exon-scaffold_331-1510915933:784218..784425TCONS_00059829-exon-scaffold_331-1510915933:784218..784425Clytia hemisphaericaexon
TCONS_00059829-exon-scaffold_331-1575043694:784218..784425TCONS_00059829-exon-scaffold_331-1575043694:784218..784425Clytia hemisphaericaexon
TCONS_00059829-exon-scaffold_331-1491911889:786101..786210TCONS_00059829-exon-scaffold_331-1491911889:786101..786210Clytia hemisphaericaexon
TCONS_00059829-exon-scaffold_331-1510915933:786101..786210TCONS_00059829-exon-scaffold_331-1510915933:786101..786210Clytia hemisphaericaexon
TCONS_00059829-exon-scaffold_331-1575043694:786101..786210TCONS_00059829-exon-scaffold_331-1575043694:786101..786210Clytia hemisphaericaexon
TCONS_00059829-exon-scaffold_331-1491911889:786409..786460TCONS_00059829-exon-scaffold_331-1491911889:786409..786460Clytia hemisphaericaexon
TCONS_00059829-exon-scaffold_331-1510915933:786409..786460TCONS_00059829-exon-scaffold_331-1510915933:786409..786460Clytia hemisphaericaexon
TCONS_00059829-exon-scaffold_331-1575043694:786409..786460TCONS_00059829-exon-scaffold_331-1575043694:786409..786460Clytia hemisphaericaexon
TCONS_00059829-exon-scaffold_331-1491911889:786769..786898TCONS_00059829-exon-scaffold_331-1491911889:786769..786898Clytia hemisphaericaexon
TCONS_00059829-exon-scaffold_331-1510915933:786769..786898TCONS_00059829-exon-scaffold_331-1510915933:786769..786898Clytia hemisphaericaexon
TCONS_00059829-exon-scaffold_331-1575043694:786769..786898TCONS_00059829-exon-scaffold_331-1575043694:786769..786898Clytia hemisphaericaexon
TCONS_00059829-exon-scaffold_331-1491911889:787128..788206TCONS_00059829-exon-scaffold_331-1491911889:787128..788206Clytia hemisphaericaexon
TCONS_00059829-exon-scaffold_331-1510915933:787128..788206TCONS_00059829-exon-scaffold_331-1510915933:787128..788206Clytia hemisphaericaexon
TCONS_00059829-exon-scaffold_331-1575043694:787128..788206TCONS_00059829-exon-scaffold_331-1575043694:787128..788206Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059829-proteinTCONS_00059829-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:784218..788206 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
64.0671	56.5916	32.6049	29.5466	39.9862	31.0181	27.4672	28.5509	16.563	16.3804	17.8931	13.4869	11.7631	12.9137	13.8371	14.0288	16.1742	14.8047	6.57924	6.22215	13.9962	10.9913	46.5571	40.6535	19.7405	21.8363	10.5106	8.4129	23.1379	26.268
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00059829 vs. Swiss-Prot (Human)
Match: RBMX2 (RNA-binding motif protein, X-linked 2 OS=Homo sapiens GN=RBMX2 PE=1 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 1.596e-58
Identity = 86/119 (72.27%), Postives = 105/119 (88.24%), Query Frame = 3 
Query:  195 MNPLTNVRNVKKLNEQDLKNGIFDHTKTWHSQYKDSAYIFIGGLPYDLTEGDVLCVFSQYGEIVNINMVRDKKTGKIKGYGFICYEDQRSTILAVDNLNGIKLGGRTIRVDHVSEYRIP 551
            MNPLT V+ + +LNE++++ G+ D   +WHS+YKDSA+IF+GGLPY+LTEGD++CVFSQYGEIVNIN+VRDKKTGK KG+ F+CYEDQRSTILAVDN NGIK+ GRTIRVDHVS YR P
Sbjct:    1 MNPLTKVKLINELNEREVQLGVADKV-SWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAP 118
The following BLAST results are available for this feature:
BLAST of TCONS_00059829 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBMX21.596e-5872.27RNA-binding motif protein, X-linked 2 OS=Homo sapi... [more]
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