TCONS_00059822 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059822
Unique NameTCONS_00059822
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length529

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059822 ID=TCONS_00059822|Name=TCONS_00059822|organism=Clytia hemisphaerica|type=transcript|length=529bp
GATTTCCAATACAAGTTGGGATTGAAAATTCTCCAAAAAAATGTCTGGAT
TTAAAAAGCTTAATTCTAAAGAGagAGAGGTACTTATCAAGCAAATTCAG
GCGTTTCTACAAGTGTTTCATTTGATATTGTGTGTTGTCATTTTCGCACT
CATTGTTGGAGCGATTTGTGGCAATGGATGGCTTTATAACATGACCGAGA
AAACATTGTATCAGGATACTGAAAAATTCATTGGATTATGGCAAACATGT
ACAAATGTGTATGATTATGGATGTCCAACTGAGAGTTGTGTCAACTCTGG
TAGTGATGCTGAAGATTACATTCAAGCAACACGAGCATTTCTGATTCTGG
CAACTCTACCATCAATTTTTGCTTTTATTGGTGGAATTGGTATGTTATGT
TCAGATCGTGTCAAAGGTCAAGTATCCGCTATTTGCCACATCATCACAGG
TGTATTTTTACTTATCGGGATGTCAGTGTACACCGCTAAGGTGAATGAAG
AAGATTCATTCGATCTTCATAAATACAGT
Run BLAST on NCBI

transcript from alignment at scaffold_331:676299..684463+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059822 ID=TCONS_00059822|Name=TCONS_00059822|organism=Clytia hemisphaerica|type=transcript|length=8165bp|location=Sequence derived from alignment at scaffold_331:676299..684463+ (Clytia hemisphaerica)
GATTTCCAATACAAGTTGGGATTGAAAATTCTCCAAAAAAATGTCTGGAT
TTAAAAAGCTTAATTCTAAAGAGGTAAGTCTattaattataattttaatt
attttcaaaatattgtgaaattttattgattcattgatatttttttcctt
cctAGGCGGGTCAAGTGGTATATTTTGACATCTGTTTGTCTAAAATGTtg
taaacttttttatttcgGGATTTTTGGAGTTTTGGCGGAACTAACTTCGG
AACTAAATTTCggaatattttattatttgtgACTTTAATATGAAAGagaa
tcaagaaaaaaaacttagGGTAAATAATGTTTATCTTACTTTAATATTCT
TTATATTCTATTTCtaaatttgacatatttttccTAAATTATAACATAAT
CGACATCTTAAGGCCTTAAGATTTGTTGATACAGTAGCGCTAAAGATTTA
ACTGATATCAGATTTTTACCAATACCAAGAAGATTTTAACTTTCTACGAT
GATGAAGTCGCAACAGATTAAAATAAGGCAAAACGTGAATTTATATTGTG
GCTGCCATTCTTACAGTGATTTAGAACGGTTTAATAAAGAGGTACCTTAA
AGGCCGTTTTCCACTTTCGCGCAAAATGGACCGTTTTTTCCTCAAccgtt
tttgcctgaagaaaagattacgtcatataaaAGTTTTGTGCGAACAAAAA
ATTTCACTCATTTCGCACGATAGTGGAGACCGGCCTCACGTACAAACCTT
GTGAAAATCTTTCCTACAGTGGAAATGAAAATCCAGTGGTAAtagcaaag
atttattatacactggataaacgactcataaaacgatggagagcgatcat
tgtattttcattgtttcagaaaacaattgatgttcaagCTTTGTCCGCNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNtgtctgatttttaaaaatgtttatcagtcttatttttaaaaagttctc
tagctctttctttttgtacatttgcagaaaaaaaagtttgaaagtaaggc
taacATTCCAAGCTGGATctatttgtgaaatctaatgtgagaaaaacatc
attagacaagaaattcagacaaaatgcttacagtgacacgaaattttcaa
ttggaaatatatttccaagactgtccccagaagaactgaaattaacatac
ataagacttatatgtcttggctccactgtggtatgaaaatcctttggagg
cacgtggtggcaaggtggtttttttgaggttaaagtttgaaaatttctgg
tgtcaacattaaatttcctatacacaacacgtcttttgcatctttcttac
agcttgaaacgtcataacgacttatcattagcaattaagtggaagaatct
gactctcacaggaaagttttaagtctcttttgggaattggatgagtgatt
ttcgataagaaaggccataaaaatgtttcgaaaaatcatttaatgaggga
aggagagtgaacaataacatcattactgcggacatagctagtacacgaga
aatcggcaaaaatatattacttgtatatccagtgtatattAAATCCTTGG
TAATAGTTTTGCAGTTGATTTTTtcccattgaatttcaaatggagataaa
ataaaattcaatttcccagtggggctattTTCCCATaggagatgaaattt
tgaccgtatcttttccagggggtctgtgAAACGAGGGTGTTGATGAGCGT
CAAAACAGAGTACTGTTTGACAGAGCCTATAGCATCGAGAGACAATCGTT
GTTTGAGGATTGATGTATCAACACGTTCTATAACCTTTTCTTCAAAGTTT
TCACTTTCAGAGCTCCTATAGCATTTGAATGTCAACTTGCATACGATAAT
TAACTTTAACTTcttatgttttgttttcttcaattttagagAGAGGTACT
TATCAAGCAAATTCAGGCGTTTCTACAAGTGTTTCATTTGATATTGTGTG
TTGTCATTTTCGCACTCATTGTTGGAGCGATTTGTGGCAATGGATGGCTT
TATAACATGACCGAGGTAACTTTTGTTTCCATTTTCCCGGTTCAAATGTA
TTCCTCATTCATTTATGGTTAAACCCTGTCATAGTTTCAGGGGGTACTGT
AGGCTACACTCGTCCCCTCTAATATGTTTAGATATAGGGGATgtgtatcg
tgtataaaattcccgtgcGAGGGTTACCCTCTTTACCCACCTTGTGTTTT
TtggttttagaaacttgattatcTTTATTAGTCAGCTTTATTTGAGAGAt
cattaaatttgaattgaaaatttgatcGAATAGAAGTTAGcacaatcatt
ggatttctaaacctctttaagaaaattgaaacagataaatttgaaataac
GCCCGGGACAGGAATTTTATTACCCTtaatcaaaacatatcagaggtgAC
GCATGCAGCCTAGGGGTAATGtctattttaaaaattgattgcACTTCGTA
ATGATTCTCATACAAGAAACACTTCGAATTGGGGGCTACCCACATTTAGT
AAGCATGGAAGGGGGGTGCTAGGTTTGCGAAGTAACAGGTATGACAAGTC
AAAAAGTGAAAATCctttaaaacaaaagttattgaaattttttgagaccc
ttttagagaatttttgtcaaaattttggacaactttttcagaaaatagtg
ACCCTTTGAGAAGGAAATTTTCGCTTttagtgattttgggaccctttgag
agactaacCTATGAATATGTAGCCCTTTTAGGGACTTTTGAGGCATGAAA
AAGGATACATATACCACCTGTTTTttcctaagtaccccccccccgggtta
acATGATAAGATCTTTTGCATCCTACAtagattatgattttttgattttg
atattacaGAAAACATTGTATCAGGATACTGAAAAATTCATTGGATTATG
GCAAACATGTACAAATGTGTATGATTATGGATGTCCAACTGAGAGTTGTG
TCAACTCTGGTAGTGATGTTGAAGGTAATTATTCGTCATTTTCGGTCTCA
AAAAAGCTTTATTATTGACAGCTGCACTTGTAAACACattgaattgaatt
tcaataatgGGGTGGAATGAAAGTTGATTTCCCAATGGGGCTTAAATTGT
AGGGTTTTTTCCCCACTGGGGAacaaaatttgggccaaattttcAAGTGG
GCTATGCTATGGGCACCGGGTTATGTGACACAATAGACCTTATCATAAAT
TACTTGCTTCGCATTCAAACAGATTCCAAATGATTTTATTATGAATAGAA
GGTAGTTGTGATAGTTGtaataaaatccactgggagttaGCCAGCAtgga
aataatttcaaaacgaggcagtggTATTCgggacgtaatttatgaaaagg
tctattcttgaATAGATAATTCATTCATCCTTAATCAAATACAACCTTCT
CCAGTCCTCAAATCTTAAAATTGAGAGTGTAGTAAAATTCCAATACAGTA
GTTAGACGTTGGATAGAGCCTGCTATAAGTTAGTAGATTCTACTTTtgga
tttttgataatttttttatgacgctgagtccagtgacgtagactaggagc
atttggcgaggtcgcctttttcaaaaaaaaatgttgaaaatccaaattca
tgatatgcaccactggagagtcttccgagaattttcaaaatattcaaccc
aatacgtcacttaaacaatagaaaaagtgacgtattgggttgaaTATTTC
GAAAGATGTAGGAATACTCTCcggtggtgcatatcatgaataacaataaa
actacttggagttgaaagatataatcaataattagaaacaaacacgatta
acagatttgcgatcccttattctcaaataaaaacattgctccatactgtt
tttaccttccaaaagcaactaaaatctggcggactgttttacattccgcc
taagcaaaagaatattaccatatactaccggacCACTTAAttgcgccatc
cagtctatcaaaaagatttaagtggaccccgggctagctATAAGTTGGat
tgaaatcaaaagaaaaatgaaattgaagtGGTTTTGAGTGCAGAGTCAGC
CACCTGGTTTCTACCATCAACCTCTTATTTTCCTCAAANTACTGAAAAAT
TCATTGGATTATGGCAAACATGTACAAATGTGTATGATTATGGATGTCCA
ACTGAGAGTTGTGTCAACTCTGGTAGTGATGCTGAAGGTTGTTATACGTC
ATTTTCGGTCTCAAAAAAGCTTTATTATTGACAGCTGCACTTGTAAACAC
ATTGCATTGAATTTCAATAATGGGGTGGAATGAAAGTTGATTTCCCAATG
GGGCTTAAATTGTAGGGTCTTTTCCCCACTGGGGATcaaaatttgggcaa
aattttCAAGTGGGCTATGCTATGGGCACCGGGTTATGTGACACGtagac
attttcataaattacttgcTTCGCATTCAAACACGGTGATCATacccctt
gagacattaaaaatgattttattatgaatagaaagtagttgtaatagttg
taataaaatccactgggagttaGCCACCAtggaaataatttcaaaacgag
gcagtggtgtccgtgacgtaatttatgaaaaggtctattcttgaATAGAT
AATTCATTCATCCTTAATTAAATACAACCTTCTCCAGTCCTCAAATCTTA
AAATTGAGAGTGTAGTAAAATTCCAATACAGAAGTTAGACGTTGGATAGA
GCCTGCTATAAGTTAGTAGATTCTACTTTtggctttttgataatttttta
tgacgctgagtctaGTGacgtagactaggagcatttggcgaggtcgcctt
tttgaaaaaaaaaatgttgaaaatcatgaataacaataaaactacttgga
gttgaaagatacaatcaaaaatcagaaacaaacacgattaacagatttgc
gatcccttattctcaaataaaaacattgcttcatactgtttttaccttcc
aaaaacaactaaaatctggcggactgttttacagtccgcctaagcaaaag
aatattaccatatactatcGGGCCACTTAAttgcgccatccagtctatca
aaaagctttaagtggaccccgggctagctATAAGTTGGattgaaatcaaa
agaaaaatgaaatcgaAGGGGTTTTGATTGCAGAGTCAGCCACTCCTTTT
CTACCATCAACTTCTTATCTTCCTCAAACCATCCATTACCTTAATGTTAT
AGATTACATTCAAGCAACACGAGCATTTCTGATTCTGGCAACTCTACCAT
CAATTTTTGCTTTTATTGGTGGAATTGGTATGTTATGTTCAGATCGTGTC
AAAGGTCAAGTATCCGCTATTTGCCACATCATCACAGGTAAATATCATTG
TGAAACCTGATCTAACCATCAGACCCCTGTAATCAGGGGATGATTCAGCA
AATTCGTCCATTTACTTCATATAGGAGAATCAAGATTTTAACTAACTCTT
TGCTCCTTTAAGATATTTGTCGCGTCTAGCAagcagtggcgtggtggcag
gggggccagggggccaggccccccccagcggagcccttttgagaaggggc
gcccaaaaataagggacgccaagaaggatttttcaggcgcccatatcgaa
aaattgacaaatgaaaaaacaaaaatggcgtcctcatcacctcaaaaact
caaaattttctggctcgcttcgctcgcacactcccttttttgtgttcata
atgagcgtatagagaggggcgccaaaaacaaaaaatcagagaaattttcc
caccacgccactgctgGCAAGTTTAAAGGTTTCTAAAATCGAATATGATT
TCAGTTTCTCACATCACAtattaaaatgtgttttttcaGCCCTTAATATT
GAAATGTCTATCTGACACCAAAAACCATTTTCGCAACCGCAGGGAGTGTT
AAAAGACTACTGGTAACAAAGCCTACATCGTATTaagaaaaaccctattt
ttgttTATGGTAGTGGGCCTACGTTTGTGTAACTTCTGTGTAAATCCTAT
CAGCCCGGACCCCCCTCTATATTACTGTGACCCCTGAGTTTATAACCTGG
TTTAATTTCATATTTAGGTGTATTTTTACTTATCGGGATGTCAGTGTACA
CCGCTAAGGTGAATGAAGAAGATTCATTCGATCTTTATAAATACAGTTGG
TCATTTGCTTTCGGTTGGGTAGCATTCGTGTTGACCCTCATTGCTGCTGT
AATCACTTTCACATTTGGTGCTCCAAAATTACCGAGAATCATTATCGAGT
TCAGAGAATAATTATTGTAACAATATTCATTGCTTGTTTTCGAGATTAAC
AAATGGCTTTGGAAAGCAGTGGATGGAGTGATAACGTGAAATTTAGAATG
AGAaataatagatcttatcggagtttttgatttttaaaaaaaagcgaTGC
CTGGGATTGTTTCTataacaatagaaatctcttaggaattcctcgaggga
attctattgtaatacccccgaaccAATCNtgtttggttgggcgattttgc
gccctttgacacgtttttagcgccttctataagtgcaatgtaattttttt
ttcgcctgcggcgcttcattcattttattttacgatttttttcaaaacta
ctatcaacattgaattgcgaaaagtaaaagcaagagaagtgttgtgtatc
caccaggggttaaagaggatgctcatcCCCAAAATcagagattgatcgaa
actgctcgctgtggtttttgtggtcttatgcgggTTAAccttctcctttt
tagaatatcttataagctgtttgacctttcttgcACCAAATTcttttgcc
tgcggcgctagaattacaaagaacccttattcttgccaacttttgaattt
ttggggcctctttcagccattgatcttNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNaatttttttgcctgcggcgctagaattaca
aagaacccttattcttgccaactttcgaatttttggggcctctttcagcc
attgatctttaatggagagtacAGGTAATAACAAGTATAATAACAAGTAA
TAACAAGTACCAGGtaataacaaggaaatagatatcaaattatcattacc
accaccttcgtataaataaaactttgttaactcagagattccgggcgtta
ctttcaaccagtcactgctcttaccaGTTTAacgaggccccccagcggca
cccctaatcacgccatcacgcaaaaaaaatttctccatcacgcatcacaa
AAATCGATAatatagcgaaaaatagcccaaatcacgcatcacgcctcaaa
tttttgccctatcacgcatcacgccaaattcttgatcacgccatcacgcc
aaaaaaaatgtttaatcacgccatcatgcaagaaaaaagtcccaatcacg
ccatcacgcaaaccgccgGGGGGAGGCCTCTTTAAAAGTTTCACTTACTG
Gtagagggcgcaaataaggacaaaaatactaggggcgccaatttcatagt
ttgcaccaccaagaaaattaagccaggccgctactgctGTAATCAGGGAT
GATTCAGCAAATTCGTCCATTTACTTCATATAGGAGAATCAAGATTTTAA
CTAACTCTTTGCTCCTTTAAGATATTTGTCGCGTCTGGCAAGTTTAAAGG
TTTCTAAAATCGAATATGATTTCAGTTTCTCACATCACAtattaaaatgt
gttttttcaGCCCTTAATATTGAAATGTCTATCTGACACCAAAAACCATT
TTCGCAACCGCAGGGAGTGTTAAAAGACTACTGGTAACAAAGCCTACATC
GTATTaagaaaaaccctatttttgttTATGGTAGTGGGCCTACGTTTGTG
TAACTTCTGTGTAAATCCTATCAGCCCGGACGCTCCATATTACTGTGACC
CCTGAGTTTATAACCTGGTTTAATTTCATATTTAGGTGTATTTCTACTTA
TCGGGATGGCAGTGTATACAGCTAAGGTGAATGAAGAAGATTCATTCGAT
CTTCATAAATACAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037628XLOC_037628Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059822-exon-scaffold_331-1491911889:676299..676371TCONS_00059822-exon-scaffold_331-1491911889:676299..676371Clytia hemisphaericaexon
TCONS_00059822-exon-scaffold_331-1510915933:676299..676371TCONS_00059822-exon-scaffold_331-1510915933:676299..676371Clytia hemisphaericaexon
TCONS_00059822-exon-scaffold_331-1575043694:676299..676371TCONS_00059822-exon-scaffold_331-1575043694:676299..676371Clytia hemisphaericaexon
TCONS_00059822-exon-scaffold_331-1491911889:678338..678463TCONS_00059822-exon-scaffold_331-1491911889:678338..678463Clytia hemisphaericaexon
TCONS_00059822-exon-scaffold_331-1510915933:678338..678463TCONS_00059822-exon-scaffold_331-1510915933:678338..678463Clytia hemisphaericaexon
TCONS_00059822-exon-scaffold_331-1575043694:678338..678463TCONS_00059822-exon-scaffold_331-1575043694:678338..678463Clytia hemisphaericaexon
TCONS_00059822-exon-scaffold_331-1491911889:679308..679354TCONS_00059822-exon-scaffold_331-1491911889:679308..679354Clytia hemisphaericaexon
TCONS_00059822-exon-scaffold_331-1510915933:679308..679354TCONS_00059822-exon-scaffold_331-1510915933:679308..679354Clytia hemisphaericaexon
TCONS_00059822-exon-scaffold_331-1575043694:679308..679354TCONS_00059822-exon-scaffold_331-1575043694:679308..679354Clytia hemisphaericaexon
TCONS_00059822-exon-scaffold_331-1491911889:680568..680635TCONS_00059822-exon-scaffold_331-1491911889:680568..680635Clytia hemisphaericaexon
TCONS_00059822-exon-scaffold_331-1510915933:680568..680635TCONS_00059822-exon-scaffold_331-1510915933:680568..680635Clytia hemisphaericaexon
TCONS_00059822-exon-scaffold_331-1575043694:680568..680635TCONS_00059822-exon-scaffold_331-1575043694:680568..680635Clytia hemisphaericaexon
TCONS_00059822-exon-scaffold_331-1491911889:681651..681785TCONS_00059822-exon-scaffold_331-1491911889:681651..681785Clytia hemisphaericaexon
TCONS_00059822-exon-scaffold_331-1510915933:681651..681785TCONS_00059822-exon-scaffold_331-1510915933:681651..681785Clytia hemisphaericaexon
TCONS_00059822-exon-scaffold_331-1575043694:681651..681785TCONS_00059822-exon-scaffold_331-1575043694:681651..681785Clytia hemisphaericaexon
TCONS_00059822-exon-scaffold_331-1491911889:682516..682556TCONS_00059822-exon-scaffold_331-1491911889:682516..682556Clytia hemisphaericaexon
TCONS_00059822-exon-scaffold_331-1510915933:682516..682556TCONS_00059822-exon-scaffold_331-1510915933:682516..682556Clytia hemisphaericaexon
TCONS_00059822-exon-scaffold_331-1575043694:682516..682556TCONS_00059822-exon-scaffold_331-1575043694:682516..682556Clytia hemisphaericaexon
TCONS_00059822-exon-scaffold_331-1491911889:684425..684463TCONS_00059822-exon-scaffold_331-1491911889:684425..684463Clytia hemisphaericaexon
TCONS_00059822-exon-scaffold_331-1510915933:684425..684463TCONS_00059822-exon-scaffold_331-1510915933:684425..684463Clytia hemisphaericaexon
TCONS_00059822-exon-scaffold_331-1575043694:684425..684463TCONS_00059822-exon-scaffold_331-1575043694:684425..684463Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:676299..684463 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.149512	0.118146	0.285076	0.133443	0.530453	0.347171	0.449296	0.0314751	0	3.09171	0	0.0454385	0.332913	0	0	0	0	0.173175	0	0	0	0.751896	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059822 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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