TCONS_00059814 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059814
Unique NameTCONS_00059814
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3434

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059814 ID=TCONS_00059814|Name=TCONS_00059814|organism=Clytia hemisphaerica|type=transcript|length=3434bp
TTGATAACCAAAAAAAGGAACActgaaaagtttttatttgttGTACCTTT
CTTTTCAAAGAGAAAGTCGCTCTAAGTAAGGactattttacaaaatatta
tcACAAAATTATCTATTCCGTAATAATAACAACACAGTGTCTGGTTCAGG
GTATGACAACCTTTTTCACAGACCAACTGGGACCCCTTCTCATCAAATAA
ACCAAACCTCGCTTCAAAATATTATTCCATTTGTCCTATCCCctctgaat
tttctgacttgaaaaaaatggattttaaacATAGTGATTTAAACCCCCGG
CCATAAAAACATATGGGAatatatcaatccccatcgagtttcagttcgtt
atttttacccccactggctagAAAactcctaccgggtctgtgagaaggcg
TGTTGTATGAGGAAAATCAGGCTGTTATCTACTGTCGATGAAAAGTATAT
ACTCCCGATATCAAATTGCTCAAATTACACTCTCAAAATACACTCCTCTA
CTCATAAAAGGAGCTACAAACCAACATTGCTAAAATAGTAGGGAGAAATT
AAGCAATTAAAAATAGTGTTGTTTTGTTCAGCCAAAAGCAGCtattttcc
acttttttcactttttgaagcttgatatctcgagttaggtagaGAAATCA
Cccatactcgcaatatatctctaatcttaatttttttagagctttccaaa
aatatacaacaggtctctcttttctcaagctaaaatatttattaaatttt
gaccctatgatttttgcctgggactgtcatatttgtccgaaaatcacacc
aaaatatccaaaaaaaattggcacctatgttattttgattcccttacctt
tccaaaaaatgtaaaacaagtgctttgaccgaGAGGAAGTTGTGACTTGG
AttgtgaagaaaaaaatagatGTACTTTAgccatttctaaaaaatctaaa
atttcgttttttcaaaaaatctaaaattccgcaaaaataatcaaaaagta
TGAATGTTACGATATTTAAACTACGGAAGGCAAAACATTTTTCAGCCTTG
AGCAAAATGAGAGAAATATCTTCGTTACTTGTTAACACATCAACTGTCAA
TAGCATCTCTTTCAGCGATAAGTGTAAACGctttgctttcttttttttcc
tatTTGTAGTgtctaaatttgaaataaaaatagtgTTTTAAGACACCACT
GAATAACCTATTGTTCAATTTACACAATTTCAATAATGCACCCCAAATCT
ACCAAGTATTTAATTTGTAAGTGGATGAGAAATAAAGTCATTTTAAGCTG
AATGTAacatattttttggaatttaacTAAATATCTCCTCAGGAACATAT
TCAGTAGTTGTGGTCGTGCttgttgttgtagttgtagGTGTGGTCGTTGT
GGTTGTAGGAGTGGTCGttgtggtcgttgttgtagtcGGAGTGGTTGTTG
TGGTTGTAGGAGTGGTCGTTTTCGTTGTTgtaggagtggtcgttgtagtA
GTTGGAGTAGTCGTTGTCGTTGTAGGAGTGGTCATTGTAGTTGTAGGTGT
GTTCTTTGTTGTAGTTGTAGTTGTAggtgtggttgttgttgttggagtgg
tcgttgtggttgtaggagtggtcgttgtagttgtaggagtggtcgttgta
gtagttggagtggtcgttgttgttgttgtaggagtggtcgttgtaggtgt
ggtcgttgttgtagttggagtggtcgttgtggttgtaggagtggtcgttg
tagtagttggagtggtcgttgtagtagttggagtggtcgttgtagtagtt
ggagtggtcgttgtagtagttggagtggtcgttgtagtAGTTGGAGTAGT
CGTTGTCGTTgtaggagtggtcgttgtagttgtagttgtaggagtggtcg
ttgtagtagttggagtggtcgttgtagtagttggagtggtcgttgtagtA
GTTGTAGTTGTAggtgtggttgttgttgttgtagttgtaggtgtggttgt
tgttgttgtaggaGTGGTCGTGGTAGTAGTTGGAGTAGTCGTTGTAGTAG
TTGGAGTAGTCGTTGTCGTTgtaggagtggtcgttgtagttgtagttata
ggagtggtcgttgtagtagttggagtggtcgttgtagtAGTTGGAGTGGT
CGTAGTAGTTGTAGGTGTGGTCGTAGTTGTAGGAGTGGTCGCTGTAGTAG
TTGTAGTTGTAggtgtggttgttgttgttgtagttgtagGTGTGGTCGTT
GTAGTTGTAGGTGTGGTCGTTGTCGTTTTTGTTGTAGGAGTGGAAGTTGT
TGTAGTTGTAGAAGTGGGAGTGGTCGTTGTAGTAGTTTGAGTGGTCGTTG
TAGTAGTttgagtggtcgttgttgttgtaggCCTGGTCGTtggagtggtc
gttgtagttGTGGTCGTTTTCTTTATCAAACACTCGTCATTTCGACAATA
CCTAGCGTAGTAACAATATTGATTGCAATAGTCTGCCACAATTCTATCTC
GATAAAGCCCACGGTCAATGTAACGAGAATTAGGACCTGTCCAGCTCCAT
TTACATAAGCATTCACCAGTAGTCAAACATTGACCTTTACCAAACAAATG
ACATTTAACGTTGCATTTCTTTTTCGGTTTCGGCGTAACCACGCTTACAC
ATTTAGGGTTTCGATACCACCTGTTGTAGTGACAGGATGTCGTACAATAA
TCAGCTGTGATGCGGTTTCGATTCGTACCTTTGTTAACATATTGTGAATT
AGGACCCGTACATTTCCATCTGCATAAGCAGCGACCGTTCGGTAAACACC
GGCCGTACGCTTTATTGTTTTTTTCGCATCTAGAATGACATTTGGTTGAT
GGAGCTTTGGTTGTTGTCGTTGTagtggtggtcgttgtcgtCGTGGGTTT
TGAAGTTGTCGAAAGAAAGGGTGTACAGACACGTGACCACGAAGGCGTGT
AGTGACATGGTACTCGACAATGATCTGCTTTAACTCTCTTATCTAGTGAC
CCTCCAGTGAGAGATACTGCATTAGGTCCAGTCCATCCCCACCAACATAG
GCAACGACCATCAGGTTGACAGACACCAGTACCTGGTGTAGGATGCTCAC
AGCGTTGGTCGCAGTGTCTCCTGACTCTGCCTCGATGACTGCCAACAACT
TGACGTGTTCTATATCTCCTTGACGAGTGACCATAGCTATGGTATCTTGC
CAAAACTATACCAATGCATAATGCAAAGATAATTGTGATTAAGGTCGACT
ggttcatttttgaaatcagcCACGACAATGTCTTGATTTAAAGtgacaag
taaaaaaaattctgaattcTCCCTTTAAAATCCAACAGTTTTGTAAACCG
CTTGTAGTTCTTGTGAACCTCTTGTGAACCTTCTTTTCAGCTAGTCAAAT
ACGGAAATGaagtgattttgaaaaatgtccaaat
Run BLAST on NCBI

transcript from alignment at scaffold_331:669273..672820+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059814 ID=TCONS_00059814|Name=TCONS_00059814|organism=Clytia hemisphaerica|type=transcript|length=3548bp|location=Sequence derived from alignment at scaffold_331:669273..672820+ (Clytia hemisphaerica)
TTGATAACCAAAAAAAGGAACActgaaaagtttttatttgttGTACCTTT CTTTTCAAAGAGAAAGTCGCTCTAAGTAAGGactattttacaaaatatta tcACAAAATTATCTATTCCGTAATAATAACAACACAGTGTCTGGTTCAGG GTATGACAACCTTTTTCACAGACCAACTGGGACCCCTTCTCATCAAATAA ACCAAACCTCGCTTCAAAATATTATTCCATTTGTCCTATCCCctctgaat tttctgacttgaaaaaaatggattttaaacATAGTGATTTAAACCCCCGG CCATAAAAACATATGGGAatatatcaatccccatcgagtttcagttcgtt atttttacccccactggctagAAAactcctaccgggtctgtgagaaggcg TGTTGTATGAGGAAAATCAGGCTGTTATCTACTGTCGATGAAAAGTATAT ACTCCCGATATCAAATTGCTCAAATTACACTCTCAAAATACACTCCTCTA CTCATAAAAGGAGCTACAAACCAACATTGCTAAAATAGTAGGGAGAAATT AAGCAATTAAAAATAGTGTTGTTTTGTTCAGCCAAAAGCAGCtattttcc acttttttcactttttgaagcttgatatctcgagttaggtagaGAAATCA Cccatactcgcaatatatctctaatcttaatttttttagagctttccaaa aatatacaacaggtctctcttttctcaagctaaaatatttattaaatttt gaccctatgatttttgcctgggactgtcatatttgtccgaaaatcacacc aaaatatccaaaaaaaattggcacctatgttattttgattcccttacctt tccaaaaaatgtaaaacaagtgctttgaccgaGAGGAAGTTGTGACTTGG AttgtgaagaaaaaaatagatGTACTTTAgccatttctaaaaaatctaaa atttcgttttttcaaaaaatctaaaattccgcaaaaataatcaaaaagta TGAATGTTACGATATTTAAACTACGGAAGGCAAAACATTTTTCAGCCTTG AGCAAAATGAGAGAAATATCTTCGTTACTTGTTAACACATCAACTGTCAA TAGCATCTCTTTCAGCGATAAGTGTAAACGctttgctttcttttttttcc tatTTGTAGTgtctaaatttgaaataaaaatagtgTTTTAAGACACCACT GAATAACCTATTGTTCAATTTACACAATTTCAATAATGCACCCCAAATCT ACCAAGTATTTAATTTGTAAGTGGATGAGAAATAAAGTCATTTTAAGCTG AATGTAacatattttttggaatttaacTAAATATCTCCTCAGGAACATAT TCAGTAGTTGTGGTCGTGCttgttgttgtagttgtagGTGTGGTCGTTGT GGTTGTAGGAGTGGTCGttgtggtcgttgttgtagtcGGAGTGGTTGTTG TGGTTGTAGGAGTGGTCGTTTTCGTTGTTgtaggagtggtcgttgtagtA GTTGGAGTAGTCGTTGTCGTTGTAGGAGTGGTCATTGTAGTTGTAGGTGT GTTCTTTGTTGTAGTTGTAGTTGTAggtgtggttgttgttgttggagtgg tcgttgtggttgtaggagtggtcgttgtagttgtaggagtggtcgttgta gtagttggagtggtcgttgttgttgttgtaggagtggtcgttgtaggtgt ggtcgttgttgtagttggagtggtcgttgtggttgtaggagtggtcgttg tagtagttggagtggtcgttgtagtagttggagtggtcgttgtagtagtt ggagtggtcgttgtagtagttggagtggtcgttgtagtAGTTGGAGTAGT CGTTGTCGTTgtaggagtggtcgttgtagttgtagttgtaggagtggtcg ttgtagtagttggagtggtcgttgtagtagttggagtggtcgttgtagtA GTTGTAGTTGTAggtgtggttgttgttgttgtagttgtaggtgtggttgt tgttgttgtaggaGTGGTCGTGGTAGTAGTTGGAGTAGTCGTTGTAGTAG TTGGAGTAGTCGTTGTCGTTgtaggagtggtcgttgtagttgtagttata ggagtggtcgttgtagtagttggagtggtcgttgtagtAGTTGGAGTGGT CGTAGTAGTTGTAGGTGTGGTCGTAGTTGTAGGAGTGGTCGCTGTAGTAG TTGTAGTTGTAggtgtggttgttgttgttgtagttgtagGTGTGGTTGtt gtggtcgttgttgttgtagttgtaggtgtggtcgttgttgtagttggaGT GGTCGTTGTGGTTGTAGGAGTGGTCGTGGTAGTTGTAGGTGTGGTCGTTG TAGGTGTGGTCGTTGTAGTTGTAGGTGTGGTCGTTGTCGTTTTTGTTGTA GGAGTGGAAGTTGTTGTAGTTGTAGAAGTGGGAGTGGTCGTTGTAGTAGT TTGAGTGGTCGTTGTAGTAGTttgagtggtcgttgttgttgtaggCCTGG TCGTtggagtggtcgttgtagttGTGGTCGTTTTCTTTATCAAACACTCG TCATTTCGACAATACCTAGCGTAGTAACAATATTGATTGCAATAGTCTGC CACAATTCTATCTCGATAAAGCCCACGGTCAATGTAACGAGAATTAGGAC CTGTCCAGCTCCATTTACATAAGCATTCACCAGTAGTCAAACATTGACCT TTACCAAACAAATGACATTTAACGTTGCATTTCTTTTTCGGTTTCGGCGT AACCACGCTTACACATTTAGGGTTTCGATACCACCTGTTGTAGTGACAGG ATGTCGTACAATAATCAGCTGTGATGCGGTTTCGATTCGTACCTTTGTTA ACATATTGTGAATTAGGACCCGTACATTTCCATCTGCATAAGCAGCGACC GTTCGGTAAACACCGGCCGTACGCTTTATTGTTTTTTTCGCATCTAGAAT GACATTTGGTTGATGGAGCTTTGGTTGTTGTCGTTGTagtggtggtcgtt gtcgtCGTGGGTTTTGAAGTTGTCGAAAGAAAGGGTGTACAGACACGTGA CCACGAAGGCGTGTAGTGACATGGTACTCGACAATGATCTGCTTTAACTC TCTTATCTAGTGACCCTCCAGTGAGAGATACTGCATTAGGTCCAGTCCAT CCCCACCAACATAGGCAACGACCATCAGGTTGACAGACACCAGTACCTGG TGTAGGATGCTCACAGCGTTGGTCGCAGTGTCTCCTGACTCTGCCTCGAT GACTGCCAACAACTTGACGTGTTCTATATCTCCTTGACGAGTGACCATAG CTATGGTATCTTGCCAAAACTATACCAATGCATAATGCAAAGATAATTGT GATTAAGGTCGACTggttcatttttgaaatcagcCACGACAATGTCTTGA TTTAAAGtgacaagtaaaaaaaattctgaattcTCCCTTTAAAATCCAAC AGTTTTGTAAACCGCTTGTAGTTCTTGTGAACCTCTTGTGAACCTTCTTT TCAGCTAGTCAAATACGGAAATGaagtgattttgaaaaatgtccaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037627XLOC_037627Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059814-exon-scaffold_331-1491911889:669273..671511TCONS_00059814-exon-scaffold_331-1491911889:669273..671511Clytia hemisphaericaexon
TCONS_00059814-exon-scaffold_331-1510915933:669273..671511TCONS_00059814-exon-scaffold_331-1510915933:669273..671511Clytia hemisphaericaexon
TCONS_00059814-exon-scaffold_331-1575043694:669273..671511TCONS_00059814-exon-scaffold_331-1575043694:669273..671511Clytia hemisphaericaexon
TCONS_00059814-exon-scaffold_331-1491911889:671626..672820TCONS_00059814-exon-scaffold_331-1491911889:671626..672820Clytia hemisphaericaexon
TCONS_00059814-exon-scaffold_331-1510915933:671626..672820TCONS_00059814-exon-scaffold_331-1510915933:671626..672820Clytia hemisphaericaexon
TCONS_00059814-exon-scaffold_331-1575043694:671626..672820TCONS_00059814-exon-scaffold_331-1575043694:671626..672820Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:669273..672820 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.330467 0.419108 0.117735 0.130201 0.114672 0.211667 1.65094 1.94707 8.46577 11.689 0.946787 9.16392 1.01186 0.910116 0.347346 0.195995 0.263696 0.132356 0.088625 0.07712 0 0 0.105351 0.198894 0 0.244027 0.274813 0.248361 0 0.148535
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059814 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top