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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059794 ID=TCONS_00059794|Name=TCONS_00059794|organism=Clytia hemisphaerica|type=transcript|length=1079bp
CTCACCTTTTGATATttcagcaaaacaaaaaaaaatattacataaaaata
tttcgcTTCAAAAATTCCACAAATACCTAAATGGAATGAGGAAGAAGAAC
CAGATtgatatgacgtcattattaGAGAAATTAAATGTTAGAAAGATCAG
TCACTAAATTAACGTGGACAAGCCATCATTCAGTCATTTGGTAAGCAACC
CAGTCtatattcaataaaatttatgtcacgaataaagaaaatcaatctaC
GGTACTCGTTGTACCACCATTAAAACTACTGAGCAATCTCTGCCTTGTTG
ACAAATACGATCTGACACTTCCAGAAGTCTGTTTTTTCCTCGGTTTGGCG
ATCGAGAAGAAAGTATCGAAAACAGATTTCCTGAATTTCCGTTGTAATTT
TGCATAAATAATGATATTGTAAATTGTGTTACAACACATCATGGCTGTTA
AAATACTGTTCACTTTTCGTAAACTTGCAGTTAATATGATACCTTTGCCA
GGTGTCATCCACGTCAACGTATACACAATATGTAATAGCTCCCTTGGGAA
TACTGATACTACAAACGCTGTCGCCACCAGTAAAAGCATTTTCAAGACTC
TATGATTCTCCTTTAAACGAGCTTGATTCTGTAAATGTGGTAGATTCTGG
CCAACATTTTTCTTTATGTTTAGTTCTCGTTTAATCACAATAAAAGTTAC
AAGGAAAACAGTCAAATATAATGAATCTCTAATCAGCATTATTGAAATGA
CAGGATAAGCATAACCATGAACCTTGACAGATGGAACATTACATATTTTT
GATCCTCCCGGCGAAACCTTTATCTTTGCGTAAATCAAATACGGTAATTC
CATCACAATAGACAAAACAATAATAAACAGTACAATCATATTAATCCGTT
TTTTAGGAATCGGATTACGGAACGGGAACTTCAGCGCGATACATCGATCA
ATATTTATCACCATGATGATCCCGAGAGAAATAGATGTAAAAGAACGCCA
TGTTAGTGGTAAAAGTTTACATCCAACCAAACCGAAATCCCAAGTTGAAA
ATTGGTTTACTGTCAAATATATAAAGAGG Run BLAST on NCBI transcript from alignment at scaffold_331:420339..421669+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059794 ID=TCONS_00059794|Name=TCONS_00059794|organism=Clytia hemisphaerica|type=transcript|length=1331bp|location=Sequence derived from alignment at scaffold_331:420339..421669+ (Clytia hemisphaerica)
CTCACCTTTTGATATttcagcaaaacaaaaaaaaatattacataaaaata
tttcgcTTCAAAAATTCCACAAATACCTAAATGGAATGAGGAAGAAGAAC
CAGATtgatatgacgtcattattaGTAAGTGTGTGTATTTTCGATTCTCG
CTTTTATTTCTCAGAAAAGTCGAGGACTTCAGGGTAATTAAACTAGGTAG
TTGCTAATGAACTTTGGATTCTTTTCTCTTgtcattttaaaatctatttA
CAATATCATATCATTTTATTTGCTTTCCTACATCTCAACTGCATTACCAA
TTTGAAAAAAGGCAGGCGCAATCAATTAACAATTAACCCACAGTTACTGA
AAAAATCATGCTAATTATCTTTTCAGGAGAAATTAAATGTTAGAAAGATC
AGTCACTAAATTAACGTGGACAAGCCATCATTCAGTCATTTGGTAAGCAA
CCCAGTCtatattcaataaaatttatgtcacgaataaagaaaatcaatct
aCGGTACTCGTTGTACCACCATTAAAACTACTGAGCAATCTCTGCCTTGT
TGACAAATACGATCTGACACTTCCAGAAGTCTGTTTTTTCCTCGGTTTGG
CGATCGAGAAGAAAGTATCGAAAACAGATTTCCTGAATTTCCGTTGTAAT
TTTGCATAAATAATGATATTGTAAATTGTGTTACAACACATCATGGCTGT
TAAAATACTGTTCACTTTTCGTAAACTTGCAGTTAATATGATACCTTTGC
CAGGTGTCATCCACGTCAACGTATACACAATATGTAATAGCTCCCTTGGG
AATACTGATACTACAAACGCTGTCGCCACCAGTAAAAGCATTTTCAAGAC
TCTATGATTCTCCTTTAAACGAGCTTGATTCTGTAAATGTGGTAGATTCT
GGCCAACATTTTTCTTTATGTTTAGTTCTCGTTTAATCACAATAAAAGTT
ACAAGGAAAACAGTCAAATATAATGAATCTCTAATCAGCATTATTGAAAT
GACAGGATAAGCATAACCATGAACCTTGACAGATGGAACATTACATATTT
TTGATCCTCCCGGCGAAACCTTTATCTTTGCGTAAATCAAATACGGTAAT
TCCATCACAATAGACAAAACAATAATAAACAGTACAATCATATTAATCCG
TTTTTTAGGAATCGGATTACGGAACGGGAACTTCAGCGCGATACATCGAT
CAATATTTATCACCATGATGATCCCGAGAGAAATAGATGTAAAAGAACGC
CATGTTAGTGGTAAAAGTTTACATCCAACCAAACCGAAATCCCAAGTTGA
AAATTGGTTTACTGTCAAATATATAAAGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059794-exon-scaffold_331-1491911889:420339..420462 | TCONS_00059794-exon-scaffold_331-1491911889:420339..420462 | Clytia hemisphaerica | exon |
| TCONS_00059794-exon-scaffold_331-1510915933:420339..420462 | TCONS_00059794-exon-scaffold_331-1510915933:420339..420462 | Clytia hemisphaerica | exon |
| TCONS_00059794-exon-scaffold_331-1575043694:420339..420462 | TCONS_00059794-exon-scaffold_331-1575043694:420339..420462 | Clytia hemisphaerica | exon |
| TCONS_00059794-exon-scaffold_331-1491911889:420715..421669 | TCONS_00059794-exon-scaffold_331-1491911889:420715..421669 | Clytia hemisphaerica | exon |
| TCONS_00059794-exon-scaffold_331-1510915933:420715..421669 | TCONS_00059794-exon-scaffold_331-1510915933:420715..421669 | Clytia hemisphaerica | exon |
| TCONS_00059794-exon-scaffold_331-1575043694:420715..421669 | TCONS_00059794-exon-scaffold_331-1575043694:420715..421669 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:420339..421669 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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