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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059777 ID=TCONS_00059777|Name=TCONS_00059777|organism=Clytia hemisphaerica|type=transcript|length=1142bp
GCCAGTTCTCTAGATAGATCAATAAAAAGCTGTTTAGCTTCTTGTGGGGT
AGTTGGCATCGCAAAATTGTTTTCTCTTCTTAAAATTGTTATAAGATCAC
GGATATCGCTTGGACaacctaaaaaaagttctgCTGAAACATGGTCTAGA
GACAGATTAAAATCTCCAATCGACAATGGCATGCCAGACTCTTCCCCTCC
ATACTCATTTGGTAATGTGTATAACAAAAAAGGAAGACCAGAAGGACATT
CTGAATTTCGCACTGGTCTTATGCGATGATGATTCCACAATTCTAAAGTT
TCATCCAGTTCGGTTTGGACCAAACCGAGAAAGCAATATCTGAATAAATC
AAGTTGCCATTGGATACTAGGATCATAAATCTGTTGATCGCACATatctt
tgaaaaagtttatCCAAAAGTTGGCTCTATTCCTGCGAAAGACTGACCAC
CATGCTTCGATACGCTGGTTTCGAATCGATGATCCAAATTGAAAACTTGA
GAAACCATCATCATCATGTTGGCGGTGAAAAAAACGCTGGATACCCGCAA
TTACAACATTTTCACCTCCTCGATCTCCGCGTACGAACCTTGGAACTAGG
CCAGCTTCTGAAACAGCACGAGTAAAGTGTGAGGCCATCATTCTTGGATT
ATTGTTGCTGGAACCGACAGACAACCATAACAACTTTCGACTCCATCCAT
CGATTGCACCATGTATGGCGAGTCCAAACGGTTTGATCTTATCGTAACCG
TCGATATGCCATATGAAATTAGGACCATTTGACACGTATACTCGACGACG
AAAACGGTGTGATTGACGACTAAGTACACCTTCAGGATCTAATTCTTTTA
AAGCTAACCGTACAGTTTCTCTATCCGTAATGAGTCCTTGAGATGTCAAC
CACTGGGTCATAAGACGATATCCAAAGTTTTGTCTGGAACCATGTAAGGC
TTCATCTATAGCAACAATAACTTCATTAATATTAGTCTTATTCTTTCGAC
GATAAAGATTTCTTATGCTTAGAATTCTGTGTAGCTGTCTCATCGAAAGT
GTTACTCCATGAAGCTGATTCATAAGATTCAGAATATCAGCATATTGAAG
TCCACGACGAAAATAATATTCAATCCATTCATCCATTATCTA Run BLAST on NCBI protein sequence of TCONS_00059777-protein >TCONS_00059777-protein ID=TCONS_00059777-protein|Name=TCONS_00059777-protein|organism=Clytia hemisphaerica|type=polypeptide|length=378bp
MDEWIEYYFRRGLQYADILNLMNQLHGVTLSMRQLHRILSIRNLYRRKNK
TNINEVIVAIDEALHGSRQNFGYRLMTQWLTSQGLITDRETVRLALKELD
PEGVLSRQSHRFRRRVYVSNGPNFIWHIDGYDKIKPFGLAIHGAIDGWSR
KLLWLSVGSSNNNPRMMASHFTRAVSEAGLVPRFVRGDRGGENVVIAGIQ
RFFHRQHDDDGFSSFQFGSSIRNQRIEAWWSVFRRNRANFWINFFKDMCD
QQIYDPSIQWQLDLFRYCFLGLVQTELDETLELWNHHRIRPVRNSECPSG
LPFLLYTLPNEYGGEESGMPLSIGDFNLSLDHVSAELFLGCPSDIRDLIT
ILRRENNFAMPTTPQEAKQLFIDLSREL Run BLAST on NCBI transcript from alignment at scaffold_330:475576..476717 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059777 ID=TCONS_00059777|Name=TCONS_00059777|organism=Clytia hemisphaerica|type=transcript|length=1142bp|location=Sequence derived from alignment at scaffold_330:475576..476717 (Clytia hemisphaerica)
TAGATAATGGATGAATGGATTGAATATTATTTTCGTCGTGGACTTCAATA
TGCTGATATTCTGAATCTTATGAATCAGCTTCATGGAGTAACACTTTCGA
TGAGACAGCTACACAGAATTCTAAGCATAAGAAATCTTTATCGTCGAAAG
AATAAGACTAATATTAATGAAGTTATTGTTGCTATAGATGAAGCCTTACA
TGGTTCCAGACAAAACTTTGGATATCGTCTTATGACCCAGTGGTTGACAT
CTCAAGGACTCATTACGGATAGAGAAACTGTACGGTTAGCTTTAAAAGAA
TTAGATCCTGAAGGTGTACTTAGTCGTCAATCACACCGTTTTCGTCGTCG
AGTATACGTGTCAAATGGTCCTAATTTCATATGGCATATCGACGGTTACG
ATAAGATCAAACCGTTTGGACTCGCCATACATGGTGCAATCGATGGATGG
AGTCGAAAGTTGTTATGGTTGTCTGTCGGTTCCAGCAACAATAATCCAAG
AATGATGGCCTCACACTTTACTCGTGCTGTTTCAGAAGCTGGCCTAGTTC
CAAGGTTCGTACGCGGAGATCGAGGAGGTGAAAATGTTGTAATTGCGGGT
ATCCAGCGTTTTTTTCACCGCCAACATGATGATGATGGTTTCTCAAGTTT
TCAATTTGGATCATCGATTCGAAACCAGCGTATCGAAGCATGGTGGTCAG
TCTTTCGCAGGAATAGAGCCAACTTTTGGataaactttttcaaagatATG
TGCGATCAACAGATTTATGATCCTAGTATCCAATGGCAACTTGATTTATT
CAGATATTGCTTTCTCGGTTTGGTCCAAACCGAACTGGATGAAACTTTAG
AATTGTGGAATCATCATCGCATAAGACCAGTGCGAAATTCAGAATGTCCT
TCTGGTCTTCCTTTTTTGTTATACACATTACCAAATGAGTATGGAGGGGA
AGAGTCTGGCATGCCATTGTCGATTGGAGATTTTAATCTGTCTCTAGACC
ATGTTTCAGcagaactttttttaggttGTCCAAGCGATATCCGTGATCTT
ATAACAATTTTAAGAAGAGAAAACAATTTTGCGATGCCAACTACCCCACA
AGAAGCTAAACAGCTTTTTATTGATCTATCTAGAGAACTGGC Coding sequence (CDS) from alignment at scaffold_330:475576..476717 >TCONS_00059777 ID=TCONS_00059777|Name=TCONS_00059777|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_330:475576..476717 (Clytia hemisphaerica)
ATGGATGAATGGATTGAATATTATTTTCGTCGTGGACTTCAATATGCTGA
TATTCTGAATCTTATGAATCAGCTTCATGGAGTAACACTTTCGATGAGAC
AGCTACACAGAATTCTAAGCATAAGAAATCTTTATCGTCGAAAGAATAAG
ACTAATATTAATGAAGTTATTGTTGCTATAGATGAAGCCTTACATGGTTC
CAGACAAAACTTTGGATATCGTCTTATGACCCAGTGGTTGACATCTCAAG
GACTCATTACGGATAGAGAAACTGTACGGTTAGCTTTAAAAGAATTAGAT
CCTGAAGGTGTACTTAGTCGTCAATCACACCGTTTTCGTCGTCGAGTATA
CGTGTCAAATGGTCCTAATTTCATATGGCATATCGACGGTTACGATAAGA
TCAAACCGTTTGGACTCGCCATACATGGTGCAATCGATGGATGGAGTCGA
AAGTTGTTATGGTTGTCTGTCGGTTCCAGCAACAATAATCCAAGAATGAT
GGCCTCACACTTTACTCGTGCTGTTTCAGAAGCTGGCCTAGTTCCAAGGT
TCGTACGCGGAGATCGAGGAGGTGAAAATGTTGTAATTGCGGGTATCCAG
CGTTTTTTTCACCGCCAACATGATGATGATGGTTTCTCAAGTTTTCAATT
TGGATCATCGATTCGAAACCAGCGTATCGAAGCATGGTGGTCAGTCTTTC
GCAGGAATAGAGCCAACTTTTGGataaactttttcaaagatATGTGCGAT
CAACAGATTTATGATCCTAGTATCCAATGGCAACTTGATTTATTCAGATA
TTGCTTTCTCGGTTTGGTCCAAACCGAACTGGATGAAACTTTAGAATTGT
GGAATCATCATCGCATAAGACCAGTGCGAAATTCAGAATGTCCTTCTGGT
CTTCCTTTTTTGTTATACACATTACCAAATGAGTATGGAGGGGAAGAGTC
TGGCATGCCATTGTCGATTGGAGATTTTAATCTGTCTCTAGACCATGTTT
CAGcagaactttttttaggttGTCCAAGCGATATCCGTGATCTTATAACA
ATTTTAAGAAGAGAAAACAATTTTGCGATGCCAACTACCCCACAAGAAGC
TAAACAGCTTTTTATTGATCTATCTAGAGAACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059777-exon-scaffold_330-1491911889:475576..476717 | TCONS_00059777-exon-scaffold_330-1491911889:475576..476717 | Clytia hemisphaerica | exon |
| TCONS_00059777-exon-scaffold_330-1510915933:475576..476717 | TCONS_00059777-exon-scaffold_330-1510915933:475576..476717 | Clytia hemisphaerica | exon |
| TCONS_00059777-exon-scaffold_330-1575043694:475576..476717 | TCONS_00059777-exon-scaffold_330-1575043694:475576..476717 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_330 | supercontig | scaffold_330:475576..476717 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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