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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059764 ID=TCONS_00059764|Name=TCONS_00059764|organism=Clytia hemisphaerica|type=transcript|length=1795bp
GCGCCGACGAAACAAGATGGCAGCTTAactgtgaaaatttgagaactttt
aaaagatCATCTCAGCTCCAGCCAACCTTCCAATCTGCTTCAATCTTAAC
AATCAATCATCAATCTTAACAATCAATCATCAATATTGATTTACCAACAT
CCTGCTTATCATTTCTCCAAATAATCTTCTCATAAAGTCCAACATGGCTG
GAGGAAACTCATCCAAACCAAACACAACAAAAAACCTTCGATCCTCTTCA
AAACTAAAGACTCCTGAAAACACAATGGTACCTGATCTCTCTCCTGACTC
ATCAGCACTAATGTCACCCACTGTGGTATCAACTAACAATCCAAGAGAAC
TCAGAGCAATAATCTCCATGCTCCAAACAAAGGTAGAACTCCTTTCCGAC
AAAGTTGACTCTCTAGACACTGAAGTCTTGTCACTTAAAAAAGCCCTTAT
CATCAATGAATCTGTCCTTGCTATCTCACAAACCACATCTTCAAATTTGA
AAGAACAActtgataggcaagaacaataTTCAAGACGAAACTGCATTGTA
TTTGATGGTGTCGACTCCTCGTCAAGGGATGGCCCTACAGAAAATACCGC
AAATGCCTTAAAGGTTCTCACAGACACGTTCCCTACAGATGAGGAAATCA
TCACAGGATTTGACAAGGCCCACCCCATTGGTCCCTTAAAAGAGGGTAAA
CAATCATTCATCATGAGGTTCAACAAACACTCCGTGGTGTCTCGGATCTA
CAAGAATCGTAGAAACCTCAAAAAGGGAATAACAGCCAGACCATCCTTAA
CCAAAACTAGATCATCAACCCTCCGCATGTGCCAGCTGACAGCTGAGAGA
ATTGATGGAATCAAGTTCGTCTTCGCTGATATTGAAGGTAACCTCAAAGT
TTGCTTTAATAATCGTAATCTAAGAGGTAGAAATATCCACAGATTTGAAA
CCGAGGAAGACTTTCGTTCCCTCATCCTTGAACACGATCATGCTACAGAC
TATACAGAGAATCCAACCAATACCAATAATCCACAAGAAACTAAACAaga
atgattttctttttaattggacTCAAATTCACATGCGTTAAACTAGCCAT
AGTAAGAGTTTATTTTATATATTGTATTTTATTTCACACTACTCTTTGGT
CTATTTTATTTCACACTTACACCTGACTTTAAGGCTCTTGTATGTATTAC
TGCTCTGTCTGCCATAAGCCTGTAAACGACAACTCTAATTCTATACAATG
TGATGTCTGCAATCTCTGGGTCCATCATAAAAAATGCTCTGGCCTAAGTC
GTGAAGAATTCCTAACTCTGTGTGAACCGAATAATAATGACAACTGGTAC
TGCCAGTGTTGTATCAATAATGCTCTCCCCTTACCCCCTGATGAAAATCC
TCAAGATCCTGATAATACTGGTTCTAATCTCAATGAAAATCTTAAATCTA
TCCTTTCTGATCTCAACAACATAGTTTCAGATTTAACAACCAATGATGAC
GacgaaaactttgatgaaataCAATTTCAATCTAATTCCTGCTCTTATGT
AACTTGTGAAGAATTTAATTCACTTCTCTCTCCCAAATCTGAAGGTCTCT
CTGCTTTCCATCTAAACATTTCTTCCATGTCTAAACACTATGATGCGCTC
CATACACTTTTGAATCAACTTAAGATCAACTTTAATTTTATAGGTATCTC
AGAATCTAGAAACACAACCGATGAGGAAAACTGCTCCCTCTACAGAGAGG
GAACAAGACTTTCCGCtaacaaattacaaaaaattcttTACTCCA Run BLAST on NCBI protein sequence of TCONS_00059764-protein >TCONS_00059764-protein ID=TCONS_00059764-protein|Name=TCONS_00059764-protein|organism=Clytia hemisphaerica|type=polypeptide|length=286bp
MAGGNSSKPNTTKNLRSSSKLKTPENTMVPDLSPDSSALMSPTVVSTNNP
RELRAIISMLQTKVELLSDKVDSLDTEVLSLKKALIINESVLAISQTTSS
NLKEQLDRQEQYSRRNCIVFDGVDSSSRDGPTENTANALKVLTDTFPTDE
EIITGFDKAHPIGPLKEGKQSFIMRFNKHSVVSRIYKNRRNLKKGITARP
SLTKTRSSTLRMCQLTAERIDGIKFVFADIEGNLKVCFNNRNLRGRNIHR
FETEEDFRSLILEHDHATDYTENPTNTNNPQETKQE Run BLAST on NCBI transcript from alignment at scaffold_330:153737..155531 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059764 ID=TCONS_00059764|Name=TCONS_00059764|organism=Clytia hemisphaerica|type=transcript|length=1795bp|location=Sequence derived from alignment at scaffold_330:153737..155531 (Clytia hemisphaerica)
TGGAGTAaagaattttttgtaatttgttaGCGGAAAGTCTTGTTCCCTCT
CTGTAGAGGGAGCAGTTTTCCTCATCGGTTGTGTTTCTAGATTCTGAGAT
ACCTATAAAATTAAAGTTGATCTTAAGTTGATTCAAAAGTGTATGGAGCG
CATCATAGTGTTTAGACATGGAAGAAATGTTTAGATGGAAAGCAGAGAGA
CCTTCAGATTTGGGAGAGAGAAGTGAATTAAATTCTTCACAAGTTACATA
AGAGCAGGAATTAGATTGAAATTGtatttcatcaaagttttcgtCGTCAT
CATTGGTTGTTAAATCTGAAACTATGTTGTTGAGATCAGAAAGGATAGAT
TTAAGATTTTCATTGAGATTAGAACCAGTATTATCAGGATCTTGAGGATT
TTCATCAGGGGGTAAGGGGAGAGCATTATTGATACAACACTGGCAGTACC
AGTTGTCATTATTATTCGGTTCACACAGAGTTAGGAATTCTTCACGACTT
AGGCCAGAGCATTTTTTATGATGGACCCAGAGATTGCAGACATCACATTG
TATAGAATTAGAGTTGTCGTTTACAGGCTTATGGCAGACAGAGCAGTAAT
ACATACAAGAGCCTTAAAGTCAGGTGTAAGTGTGAAATAAAATAGACCAA
AGAGTAGTGTGAAATAAAATACAATATATAAAATAAACTCTTACTATGGC
TAGTTTAACGCATGTGAATTTGAgtccaattaaaaagaaaatcattctTG
TTTAGTTTCTTGTGGATTATTGGTATTGGTTGGATTCTCTGTATAGTCTG
TAGCATGATCGTGTTCAAGGATGAGGGAACGAAAGTCTTCCTCGGTTTCA
AATCTGTGGATATTTCTACCTCTTAGATTACGATTATTAAAGCAAACTTT
GAGGTTACCTTCAATATCAGCGAAGACGAACTTGATTCCATCAATTCTCT
CAGCTGTCAGCTGGCACATGCGGAGGGTTGATGATCTAGTTTTGGTTAAG
GATGGTCTGGCTGTTATTCCCTTTTTGAGGTTTCTACGATTCTTGTAGAT
CCGAGACACCACGGAGTGTTTGTTGAACCTCATGATGAATGATTGTTTAC
CCTCTTTTAAGGGACCAATGGGGTGGGCCTTGTCAAATCCTGTGATGATT
TCCTCATCTGTAGGGAACGTGTCTGTGAGAACCTTTAAGGCATTTGCGGT
ATTTTCTGTAGGGCCATCCCTTGACGAGGAGTCGACACCATCAAATACAA
TGCAGTTTCGTCTTGAAtattgttcttgcctatcaagTTGTTCTTTCAAA
TTTGAAGATGTGGTTTGTGAGATAGCAAGGACAGATTCATTGATGATAAG
GGCTTTTTTAAGTGACAAGACTTCAGTGTCTAGAGAGTCAACTTTGTCGG
AAAGGAGTTCTACCTTTGTTTGGAGCATGGAGATTATTGCTCTGAGTTCT
CTTGGATTGTTAGTTGATACCACAGTGGGTGACATTAGTGCTGATGAGTC
AGGAGAGAGATCAGGTACCATTGTGTTTTCAGGAGTCTTTAGTTTTGAAG
AGGATCGAAGGTTTTTTGTTGTGTTTGGTTTGGATGAGTTTCCTCCAGCC
ATGTTGGACTTTATGAGAAGATTATTTGGAGAAATGATAAGCAGGATGTT
GGTAAATCAATATTGATGATTGATTGTTAAGATTGATGATTGATTGTTAA
GATTGAAGCAGATTGGAAGGTTGGCTGGAGCTGAGATGatcttttaaaag
ttctcaaattttcacagtTAAGCTGCCATCTTGTTTCGTCGGCGC Coding sequence (CDS) from alignment at scaffold_330:153737..155531 >TCONS_00059764 ID=TCONS_00059764|Name=TCONS_00059764|organism=Clytia hemisphaerica|type=CDS|length=861bp|location=Sequence derived from alignment at scaffold_330:153737..155531 (Clytia hemisphaerica)
tcattctTGTTTAGTTTCTTGTGGATTATTGGTATTGGTTGGATTCTCTG
TATAGTCTGTAGCATGATCGTGTTCAAGGATGAGGGAACGAAAGTCTTCC
TCGGTTTCAAATCTGTGGATATTTCTACCTCTTAGATTACGATTATTAAA
GCAAACTTTGAGGTTACCTTCAATATCAGCGAAGACGAACTTGATTCCAT
CAATTCTCTCAGCTGTCAGCTGGCACATGCGGAGGGTTGATGATCTAGTT
TTGGTTAAGGATGGTCTGGCTGTTATTCCCTTTTTGAGGTTTCTACGATT
CTTGTAGATCCGAGACACCACGGAGTGTTTGTTGAACCTCATGATGAATG
ATTGTTTACCCTCTTTTAAGGGACCAATGGGGTGGGCCTTGTCAAATCCT
GTGATGATTTCCTCATCTGTAGGGAACGTGTCTGTGAGAACCTTTAAGGC
ATTTGCGGTATTTTCTGTAGGGCCATCCCTTGACGAGGAGTCGACACCAT
CAAATACAATGCAGTTTCGTCTTGAAtattgttcttgcctatcaagTTGT
TCTTTCAAATTTGAAGATGTGGTTTGTGAGATAGCAAGGACAGATTCATT
GATGATAAGGGCTTTTTTAAGTGACAAGACTTCAGTGTCTAGAGAGTCAA
CTTTGTCGGAAAGGAGTTCTACCTTTGTTTGGAGCATGGAGATTATTGCT
CTGAGTTCTCTTGGATTGTTAGTTGATACCACAGTGGGTGACATTAGTGC
TGATGAGTCAGGAGAGAGATCAGGTACCATTGTGTTTTCAGGAGTCTTTA
GTTTTGAAGAGGATCGAAGGTTTTTTGTTGTGTTTGGTTTGGATGAGTTT
CCTCCAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059764-exon-scaffold_330-1491911889:153737..155531 | TCONS_00059764-exon-scaffold_330-1491911889:153737..155531 | Clytia hemisphaerica | exon |
| TCONS_00059764-exon-scaffold_330-1510915933:153737..155531 | TCONS_00059764-exon-scaffold_330-1510915933:153737..155531 | Clytia hemisphaerica | exon |
| TCONS_00059764-exon-scaffold_330-1575043694:153737..155531 | TCONS_00059764-exon-scaffold_330-1575043694:153737..155531 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_330 | supercontig | scaffold_330:153737..155531 . |
Blast
The following BLAST results are available for this feature:
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