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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059741 ID=TCONS_00059741|Name=TCONS_00059741|organism=Clytia hemisphaerica|type=transcript|length=1587bp
TTCTTTTCTTGAGAAAtggaaaaatctcaattttaaTGGCTGGAATCTAA
TGAATATCAAAGCCTTAGATGAATTTAGGAAATTAAGAATCCATGTAGAG
AAAGGCTGTCTATCAGGGATTCCACCAGGAATGGGAACCAATCGAAATGA
AGCCCTACACAGGTTCCTTGGTCAATTCAAAAGAAACAGGCTATCAGTTG
AATCTGCTACTGCAATCATTAACCTTATACTCTACACAAGTAATTGCAAG
AAACATGGTTGTCAGATTGTCCCACCTATATGGAGTCAGTATCCAAATTC
AAGCCAAAAAGTCTCCATCTCAACCCCAATGCCAaaagaatcaaaagaaa
accCACAAAGAAATGATTATCACATCACAGAATACTCTGAGCACGACTAT
TATCATCAGTCTGagGCATCCAAGATAGTTTCCTTTGCAGAAATTCTCTC
CGAGTTGAACCAGAAACTTCCCAAACAAATAACACAAAAGCTGTTCAGAT
ATCAAGGATTCACTACTCTTCCGATGGAGTGTTGGTCTTTACGTGAGTAT
TTCATTACTATACACAGTGGTGGAAATTTCGACCCCAACACTCTGCAAGC
TGTCTTTAAAAGTATGGAATTGGAGAAAAAAGAGACAGATGGaacatttt
tagtatttttactCGAAGCACTAAAATTTGGCTGCAAAACATATGATTTG
CCATCTTCTCTGATAAATTACGTCAACGACTTGTTAGAACACAAAGATCC
AATATCAGAATTGAAAGCAGCTTTTGATGAAGAAATACTTAGCCCAAGAA
ATTCTCTCTACTCAAAGGAAAATGGTAAAGTAAGAAGTTACGATGACTTA
CATTATTCGGCATTACCCTTGGTGGCAGCAAACatttttaactttgtatt
tgtAATAATACCATCAAAGTCAGACTTACCAATGATGCCCGTTTTTCCTA
GTATGGCTGTTAATAGcttcaaaaacataatttttacgTTTTGTAATGGT
GATGAATTCTTTCCTTTGGTTCCTATTGAAAAAGATGATGGTAACACCAC
AACAAAAAATGTCACCCATAAAAAAATCAGGTGTTTTTGTGGTGAAAAGG
TTAAAAATAAGCCGGGAAAGGTTAATTGTTATAAGAATTTTAGCTGTTCT
TGCATCAAAGCAAACCAACCATGCAACTCTTTGTGCAAATGTAAGAAATG
TGGAAATGAAAAGCCAGTAATAAGTGAGCCAGATAGAAAACGACGAAAGA
GAACGCTTCatgatttttcctttaaaagatCTGGCACATCTTTGGAATAT
TTGTTAAATTTGGGGGAGAAACCTAAAGATGAATTTGTGAGCAGCGTTCA
GCATTTCATTTTAGAGGCTGTTGTtcattttgctgtttttgaacTACAGA
ATAATGACTGGTTTTTTAAAGAACAAGAAGAAACTGTATGTGATAGAGTT
TATCAACTTTTGATATCCATAAAGTCAGAAGACTcaagtttttctgtttt
ttttgacTTGGAAAAAGCTTTAGTTCTCAAATGGATCAAAAGTAGAAGAG
TGAAACATGAAATAATGATTCAAAAGCATTAATTTAT Run BLAST on NCBI protein sequence of TCONS_00059741-protein >TCONS_00059741-protein ID=TCONS_00059741-protein|Name=TCONS_00059741-protein|organism=Clytia hemisphaerica|type=polypeptide|length=526bp
SFLEKWKNLNFNGWNLMNIKALDEFRKLRIHVEKGCLSGIPPGMGTNRNE
ALHRFLGQFKRNRLSVESATAIINLILYTSNCKKHGCQIVPPIWSQYPNS
SQKVSISTPMPKESKENPQRNDYHITEYSEHDYYHQSEASKIVSFAEILS
ELNQKLPKQITQKLFRYQGFTTLPMECWSLREYFITIHSGGNFDPNTLQA
VFKSMELEKKETDGTFLVFLLEALKFGCKTYDLPSSLINYVNDLLEHKDP
ISELKAAFDEEILSPRNSLYSKENGKVRSYDDLHYSALPLVAANIFNFVF
VIIPSKSDLPMMPVFPSMAVNSFKNIIFTFCNGDEFFPLVPIEKDDGNTT
TKNVTHKKIRCFCGEKVKNKPGKVNCYKNFSCSCIKANQPCNSLCKCKKC
GNEKPVISEPDRKRRKRTLHDFSFKRSGTSLEYLLNLGEKPKDEFVSSVQ
HFILEAVVHFAVFELQNNDWFFKEQEETVCDRVYQLLISIKSEDSSFSVF
FDLEKALVLKWIKSRRVKHEIMIQKH Run BLAST on NCBI transcript from alignment at scaffold_330:367354..370033- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059741 ID=TCONS_00059741|Name=TCONS_00059741|organism=Clytia hemisphaerica|type=transcript|length=2680bp|location=Sequence derived from alignment at scaffold_330:367354..370033- (Clytia hemisphaerica)
TTCTTTTCTTGAGAAATGGAAAAATCTCAATTTTAATGGCTGGAATCTAA
TGAATATCAAAGCCTTAGATGAATTTAGGAAATTAAGAATCCATGTAGAG
AAAGGCTGTCTATCAGGGATTCCACCAGGAATGGGAACCAATCGAAATGA
AGCCCTACACAGGTTCCTTGGTCAATTCAAAAGAAACAGGCTATCAGTTG
AATCTGCTACTGCAATCATTAACCTTATACTCTACACAAGTAATTGCAAG
AAACATGGTTGTCAGATTGTCCCACCTATATGGAGTCAGTATCCAAATTC
AAGCCAAAAAGTCTCCATCTCAACCCCAATGCCAAAAGAATCAAAAGAAA
ACCCACAAAGAAATGATTATCACATCACAGAATACTCTGAGCACGACTAT
TATCATCAGTCTGGTAAGATCTGTCTAATGGGCTTTTCCAGAAAAAATTC
GTTCATGGGGGGTGGAGGATATATTATTTTTTCTGTGATCTACCCCTGGA
CATTTCGATTTTTCACCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCCCCATGGACATGGCAGTTTTTCAGGGTTTTTTCAATACCCCTG
GACAATATATCCTCCACCCCCCATGAATGGTTTTTTTCTGGAAGAGCCCA
ATGTCCTTTTTGAGGCATCCATTTATTCCCCCTATTCGCCTTAGGGCATA
TATCAAGCATAATATTGTGATTCAATTATAAATTGCAGTTATTAAAAATA
CCAATTCATATCTAAATTAATTTGAAACTTCAGGTGAGACTAAGTGTAAA
AAAATTGAACCTAAAAAAAATTCATATATTATTATTTTTTTGTTTTTGGA
GTCCAAACGACAAAAAATTTGTCTCGCCTTATCAAGCATAAATAAAAAAA
CATAAAAATATTTGAAATATCGAATTGGAAAAGGAAAAGCACATGAAAAC
TTTTTTTCAGCATTAGTTTCATATAATCGAGTTAATCATATTTTGTCTAT
GGATTTTGTCTGAAGGATCATGAATTTAATTTTGATGTTTTTTTATTTTA
TTTCAGAGGCATCCAAGATAGTTTCCTTTGCAGAAATTCTCTCCGAGTTG
AACCAGAAACTTCCCAAACAAATAACACAAAAGCTGTTCAGATATCAAGG
ATTCACTACTCTTCCGATGGAGTGTTGGTCTTTACGTGAGTATTTCATTA
CTATACACAGTGGTGGAAATTTCGACCCCAACACTCTGCAAGCTGTCTTT
AAAAGTATGGAATTGGAGAAAAAAGAGACAGATGGAACATTTTTAGTATT
TTTACTCGAAGCACTAAAATTTGGCTGCAAAACATATGATTTGCCATCTT
CTCTGATAAATTACGTCAACGACTTGTTAGAACACAAAGATCCAATATCA
GAATTGAAAGCAGCTTTTGATGAAGAAATACTTAGCCCAAGAAATTCTCT
CTACTCAAAGGAAAATGGTAAAGTAAGAAGTTACGATGACTTACATTATT
CGGCATTACCCTTGGTGGCAGCAAACATTTTTAACTTTGTATTTGTAATA
ATACCATCAAAGTCAGACTTACCAATGATGCCCGTTTTTCCTAGTATGGC
TGTTAATAGCTTCAAAAACATAATTTTTACGTTTTGTAATGGTGATGAAT
TCTTTCCTTTGGTTCCTATTGAAAAAGATGATGGTAACACCACAACAAAA
AATGTCACCCATAAAAAAATCAGGTGTTTTTGTGGTGAAAAGGTTAAAAA
TAAGCCGGGAAAGGTTAATTGTTATAAGAATTTTAGCTGTTCTTGCATCA
AAGCAAACCAACCATGCAACTCTTTGTGCAAATGTAAGAAATGTGGAAAT
GAAAAGCCAGTAATAAGTGAGCCAGATAGAAAACGACGAAAGAGAACGCT
TCATGATTTTTCCTTTAAAAGATCTGGCACATCTTTGGAATATTTGTTAA
ATTTGGGGGAGAAACCTAAAGATGAATTTGTGAGCAGCGTTCAGCATTTC
ATTTTAGAGGCTGTTGTTCATTTTGCTGTTTTTGAACTACAGAATAATGA
CTGGTTTTTTAAAGAACAAGAAGAAACTGTATGTGATAGAGTTTATCAAC
TTTTGATATCCATAAAGTCAGAAGACTCAAGTTTTTCTGTTTTTTTTGAC
TTGGAAAAAGCTTTAGTTCTCAAATGGATCAAAAGTAGAAGAGTGAAACA
TGAAATAATGATTCAAAAGCATTAATTTAT Coding sequence (CDS) from alignment at scaffold_330:367354..370033- >TCONS_00059741 ID=TCONS_00059741|Name=TCONS_00059741|organism=Clytia hemisphaerica|type=CDS|length=3162bp|location=Sequence derived from alignment at scaffold_330:367354..370033- (Clytia hemisphaerica)
AGGCATCCAAGATAGTTTCCTTTGCAGAAATTCTCTCCGAGTTGAACCAG
AAACTTCCCAAACAAATAACACAAAAGCTGTTCAGATATCAAGGATTCAC
TACTCTTCCGATGGAGTGTTGGTCTTTACGTGAGTATTTCATTACTATAC
ACAGTGGTGGAAATTTCGACCCCAACACTCTGCAAGCTGTCTTTAAAAGT
ATGGAATTGGAGAAAAAAGAGACAGATGGAACATTTTTAGTATTTTTACT
CGAAGCACTAAAATTTGGCTGCAAAACATATGATTTGCCATCTTCTCTGA
TAAATTACGTCAACGACTTGTTAGAACACAAAGATCCAATATCAGAATTG
AAAGCAGCTTTTGATGAAGAAATACTTAGCCCAAGAAATTCTCTCTACTC
AAAGGAAAATGGTAAAGTAAGAAGTTACGATGACTTACATTATTCGGCAT
TACCCTTGGTGGCAGCAAACATTTTTAACTTTGTATTTGTAATAATACCA
TCAAAGTCAGACTTACCAATGATGCCCGTTTTTCCTAGTATGGCTGTTAA
TAGCTTCAAAAACATAATTTTTACGTTTTGTAATGGTGATGAATTCTTTC
CTTTGGTTCCTATTGAAAAAGATGATGGTAACACCACAACAAAAAATGTC
ACCCATAAAAAAATCAGGTGTTTTTGTGGTGAAAAGGTTAAAAATAAGCC
GGGAAAGGTTAATTGTTATAAGAATTTTAGCTGTTCTTGCATCAAAGCAA
ACCAACCATGCAACTCTTTGTGCAAATGTAAGAAATGTGGAAATGAAAAG
CCAGTAATAAGTGAGCCAGATAGAAAACGACGAAAGAGAACGCTTCATGA
TTTTTCCTTTAAAAGATCTGGCACATCTTTGGAATATTTGTTAAATTTGG
GGGAGAAACCTAAAGATGAATTTGTGAGCAGCGTTCAGCATTTCATTTTA
GAGGCTGTTGTTCATTTTGCTGTTTTTGAACTACAGAATAATGACTGGTT
TTTTAAAGAACAAGAAGAAACTGTATGTGATAGAGTTTATCAACTTTTGA
TATCCATAAAGTCAGAAGACTCAAGTTTTTCTGTTTTTTTTGACTTGGAA
AAAGCTTTAGTTCTCAAATGGATCAAAAGTAGAAGAGTGAAACATGAAAT
AATGATTCAAAAGCATTAATCTTTTCTTGAGAAATGGAAAAATCTCAATT
TTAATGGCTGGAATCTAATGAATATCAAAGCCTTAGATGAATTTAGGAAA
TTAAGAATCCATGTAGAGAAAGGCTGTCTATCAGGGATTCCACCAGGAAT
GGGAACCAATCGAAATGAAGCCCTACACAGGTTCCTTGGTCAATTCAAAA
GAAACAGGCTATCAGTTGAATCTGCTACTGCAATCATTAACCTTATACTC
TACACAAGTAATTGCAAGAAACATGGTTGTCAGATTGTCCCACCTATATG
GAGTCAGTATCCAAATTCAAGCCAAAAAGTCTCCATCTCAACCCCAATGC
CAAAAGAATCAAAAGAAAACCCACAAAGAAATGATTATCACATCACAGAA
TACTCTGAGCACGACTATTATCATCAGTCTGAGGCATCCAAGATAGTTTC
CTTTGCAGAAATTCTCTCCGAGTTGAACCAGAAACTTCCCAAACAAATAA
CACAAAAGCTGTTCAGATATCAAGGATTCACTACTCTTCCGATGGAGTGT
TGGTCTTTACGTGAGTATTTCATTACTATACACAGTGGTGGAAATTTCGA
CCCCAACACTCTGCAAGCTGTCTTTAAAAGTATGGAATTGGAGAAAAAAG
AGACAGATGGAACATTTTTAGTATTTTTACTCGAAGCACTAAAATTTGGC
TGCAAAACATATGATTTGCCATCTTCTCTGATAAATTACGTCAACGACTT
GTTAGAACACAAAGATCCAATATCAGAATTGAAAGCAGCTTTTGATGAAG
AAATACTTAGCCCAAGAAATTCTCTCTACTCAAAGGAAAATGGTAAAGTA
AGAAGTTACGATGACTTACATTATTCGGCATTACCCTTGGTGGCAGCAAA
CATTTTTAACTTTGTATTTGTAATAATACCATCAAAGTCAGACTTACCAA
TGATGCCCGTTTTTCCTAGTATGGCTGTTAATAGCTTCAAAAACATAATT
TTTACGTTTTGTAATGGTGATGAATTCTTTCCTTTGGTTCCTATTGAAAA
AGATGATGGTAACACCACAACAAAAAATGTCACCCATAAAAAAATCAGGT
GTTTTTGTGGTGAAAAGGTTAAAAATAAGCCGGGAAAGGTTAATTGTTAT
AAGAATTTTAGCTGTTCTTGCATCAAAGCAAACCAACCATGCAACTCTTT
GTGCAAATGTAAGAAATGTGGAAATGAAAAGCCAGTAATAAGTGAGCCAG
ATAGAAAACGACGAAAGAGAACGCTTCATGATTTTTCCTTTAAAAGATCT
GGCACATCTTTGGAATATTTGTTAAATTTGGGGGAGAAACCTAAAGATGA
ATTTGTGAGCAGCGTTCAGCATTTCATTTTAGAGGCTGTTGTTCATTTTG
CTGTTTTTGAACTACAGAATAATGACTGGTTTTTTAAAGAACAAGAAGAA
ACTGTATGTGATAGAGTTTATCAACTTTTGATATCCATAAAGTCAGAAGA
CTCAAGTTTTTCTGTTTTTTTTGACTTGGAAAAAGCTTTAGTTCTCAAAT
GGATCAAAAGTAGAAGAGTGAAACATGAAATAATGATTCAAAAGCATTAA
TCTTTTCTTGAGAAATGGAAAAATCTCAATTTTAATGGCTGGAATCTAAT
GAATATCAAAGCCTTAGATGAATTTAGGAAATTAAGAATCCATGTAGAGA
AAGGCTGTCTATCAGGGATTCCACCAGGAATGGGAACCAATCGAAATGAA
GCCCTACACAGGTTCCTTGGTCAATTCAAAAGAAACAGGCTATCAGTTGA
ATCTGCTACTGCAATCATTAACCTTATACTCTACACAAGTAATTGCAAGA
AACATGGTTGTCAGATTGTCCCACCTATATGGAGTCAGTATCCAAATTCA
AGCCAAAAAGTCTCCATCTCAACCCCAATGCCAAAAGAATCAAAAGAAAA
CCCACAAAGAAATGATTATCACATCACAGAATACTCTGAGCACGACTATT
ATCATCAGTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059741-exon-scaffold_330-1575043694:369621..370033 | TCONS_00059741-exon-scaffold_330-1575043694:369621..370033 | Clytia hemisphaerica | exon |
| TCONS_00059741-exon-scaffold_330-1575043694:367354..368527 | TCONS_00059741-exon-scaffold_330-1575043694:367354..368527 | Clytia hemisphaerica | exon |
| TCONS_00059741-exon-scaffold_330-1510915933:369621..370033 | TCONS_00059741-exon-scaffold_330-1510915933:369621..370033 | Clytia hemisphaerica | exon |
| TCONS_00059741-exon-scaffold_330-1510915933:367354..368527 | TCONS_00059741-exon-scaffold_330-1510915933:367354..368527 | Clytia hemisphaerica | exon |
| TCONS_00059741-exon-scaffold_330-1491911889:369621..370033 | TCONS_00059741-exon-scaffold_330-1491911889:369621..370033 | Clytia hemisphaerica | exon |
| TCONS_00059741-exon-scaffold_330-1491911889:367354..368527 | TCONS_00059741-exon-scaffold_330-1491911889:367354..368527 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_330 | supercontig | scaffold_330:367354..370033 - |
Blast
The following BLAST results are available for this feature:
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