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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059741 ID=TCONS_00059741|Name=TCONS_00059741|organism=Clytia hemisphaerica|type=transcript|length=1587bp TTCTTTTCTTGAGAAAtggaaaaatctcaattttaaTGGCTGGAATCTAA TGAATATCAAAGCCTTAGATGAATTTAGGAAATTAAGAATCCATGTAGAG AAAGGCTGTCTATCAGGGATTCCACCAGGAATGGGAACCAATCGAAATGA AGCCCTACACAGGTTCCTTGGTCAATTCAAAAGAAACAGGCTATCAGTTG AATCTGCTACTGCAATCATTAACCTTATACTCTACACAAGTAATTGCAAG AAACATGGTTGTCAGATTGTCCCACCTATATGGAGTCAGTATCCAAATTC AAGCCAAAAAGTCTCCATCTCAACCCCAATGCCAaaagaatcaaaagaaa accCACAAAGAAATGATTATCACATCACAGAATACTCTGAGCACGACTAT TATCATCAGTCTGagGCATCCAAGATAGTTTCCTTTGCAGAAATTCTCTC CGAGTTGAACCAGAAACTTCCCAAACAAATAACACAAAAGCTGTTCAGAT ATCAAGGATTCACTACTCTTCCGATGGAGTGTTGGTCTTTACGTGAGTAT TTCATTACTATACACAGTGGTGGAAATTTCGACCCCAACACTCTGCAAGC TGTCTTTAAAAGTATGGAATTGGAGAAAAAAGAGACAGATGGaacatttt tagtatttttactCGAAGCACTAAAATTTGGCTGCAAAACATATGATTTG CCATCTTCTCTGATAAATTACGTCAACGACTTGTTAGAACACAAAGATCC AATATCAGAATTGAAAGCAGCTTTTGATGAAGAAATACTTAGCCCAAGAA ATTCTCTCTACTCAAAGGAAAATGGTAAAGTAAGAAGTTACGATGACTTA CATTATTCGGCATTACCCTTGGTGGCAGCAAACatttttaactttgtatt tgtAATAATACCATCAAAGTCAGACTTACCAATGATGCCCGTTTTTCCTA GTATGGCTGTTAATAGcttcaaaaacataatttttacgTTTTGTAATGGT GATGAATTCTTTCCTTTGGTTCCTATTGAAAAAGATGATGGTAACACCAC AACAAAAAATGTCACCCATAAAAAAATCAGGTGTTTTTGTGGTGAAAAGG TTAAAAATAAGCCGGGAAAGGTTAATTGTTATAAGAATTTTAGCTGTTCT TGCATCAAAGCAAACCAACCATGCAACTCTTTGTGCAAATGTAAGAAATG TGGAAATGAAAAGCCAGTAATAAGTGAGCCAGATAGAAAACGACGAAAGA GAACGCTTCatgatttttcctttaaaagatCTGGCACATCTTTGGAATAT TTGTTAAATTTGGGGGAGAAACCTAAAGATGAATTTGTGAGCAGCGTTCA GCATTTCATTTTAGAGGCTGTTGTtcattttgctgtttttgaacTACAGA ATAATGACTGGTTTTTTAAAGAACAAGAAGAAACTGTATGTGATAGAGTT TATCAACTTTTGATATCCATAAAGTCAGAAGACTcaagtttttctgtttt ttttgacTTGGAAAAAGCTTTAGTTCTCAAATGGATCAAAAGTAGAAGAG TGAAACATGAAATAATGATTCAAAAGCATTAATTTAT Run BLAST on NCBI protein sequence of TCONS_00059741-protein >TCONS_00059741-protein ID=TCONS_00059741-protein|Name=TCONS_00059741-protein|organism=Clytia hemisphaerica|type=polypeptide|length=526bp
SFLEKWKNLNFNGWNLMNIKALDEFRKLRIHVEKGCLSGIPPGMGTNRNE ALHRFLGQFKRNRLSVESATAIINLILYTSNCKKHGCQIVPPIWSQYPNS SQKVSISTPMPKESKENPQRNDYHITEYSEHDYYHQSEASKIVSFAEILS ELNQKLPKQITQKLFRYQGFTTLPMECWSLREYFITIHSGGNFDPNTLQA VFKSMELEKKETDGTFLVFLLEALKFGCKTYDLPSSLINYVNDLLEHKDP ISELKAAFDEEILSPRNSLYSKENGKVRSYDDLHYSALPLVAANIFNFVF VIIPSKSDLPMMPVFPSMAVNSFKNIIFTFCNGDEFFPLVPIEKDDGNTT TKNVTHKKIRCFCGEKVKNKPGKVNCYKNFSCSCIKANQPCNSLCKCKKC GNEKPVISEPDRKRRKRTLHDFSFKRSGTSLEYLLNLGEKPKDEFVSSVQ HFILEAVVHFAVFELQNNDWFFKEQEETVCDRVYQLLISIKSEDSSFSVF FDLEKALVLKWIKSRRVKHEIMIQKH Run BLAST on NCBI transcript from alignment at scaffold_330:367354..370033- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059741 ID=TCONS_00059741|Name=TCONS_00059741|organism=Clytia hemisphaerica|type=transcript|length=2680bp|location=Sequence derived from alignment at scaffold_330:367354..370033- (Clytia hemisphaerica) TTCTTTTCTTGAGAAATGGAAAAATCTCAATTTTAATGGCTGGAATCTAA
TGAATATCAAAGCCTTAGATGAATTTAGGAAATTAAGAATCCATGTAGAG
AAAGGCTGTCTATCAGGGATTCCACCAGGAATGGGAACCAATCGAAATGA
AGCCCTACACAGGTTCCTTGGTCAATTCAAAAGAAACAGGCTATCAGTTG
AATCTGCTACTGCAATCATTAACCTTATACTCTACACAAGTAATTGCAAG
AAACATGGTTGTCAGATTGTCCCACCTATATGGAGTCAGTATCCAAATTC
AAGCCAAAAAGTCTCCATCTCAACCCCAATGCCAAAAGAATCAAAAGAAA
ACCCACAAAGAAATGATTATCACATCACAGAATACTCTGAGCACGACTAT
TATCATCAGTCTGGTAAGATCTGTCTAATGGGCTTTTCCAGAAAAAATTC
GTTCATGGGGGGTGGAGGATATATTATTTTTTCTGTGATCTACCCCTGGA
CATTTCGATTTTTCACCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCCCCATGGACATGGCAGTTTTTCAGGGTTTTTTCAATACCCCTG
GACAATATATCCTCCACCCCCCATGAATGGTTTTTTTCTGGAAGAGCCCA
ATGTCCTTTTTGAGGCATCCATTTATTCCCCCTATTCGCCTTAGGGCATA
TATCAAGCATAATATTGTGATTCAATTATAAATTGCAGTTATTAAAAATA
CCAATTCATATCTAAATTAATTTGAAACTTCAGGTGAGACTAAGTGTAAA
AAAATTGAACCTAAAAAAAATTCATATATTATTATTTTTTTGTTTTTGGA
GTCCAAACGACAAAAAATTTGTCTCGCCTTATCAAGCATAAATAAAAAAA
CATAAAAATATTTGAAATATCGAATTGGAAAAGGAAAAGCACATGAAAAC
TTTTTTTCAGCATTAGTTTCATATAATCGAGTTAATCATATTTTGTCTAT
GGATTTTGTCTGAAGGATCATGAATTTAATTTTGATGTTTTTTTATTTTA
TTTCAGAGGCATCCAAGATAGTTTCCTTTGCAGAAATTCTCTCCGAGTTG
AACCAGAAACTTCCCAAACAAATAACACAAAAGCTGTTCAGATATCAAGG
ATTCACTACTCTTCCGATGGAGTGTTGGTCTTTACGTGAGTATTTCATTA
CTATACACAGTGGTGGAAATTTCGACCCCAACACTCTGCAAGCTGTCTTT
AAAAGTATGGAATTGGAGAAAAAAGAGACAGATGGAACATTTTTAGTATT
TTTACTCGAAGCACTAAAATTTGGCTGCAAAACATATGATTTGCCATCTT
CTCTGATAAATTACGTCAACGACTTGTTAGAACACAAAGATCCAATATCA
GAATTGAAAGCAGCTTTTGATGAAGAAATACTTAGCCCAAGAAATTCTCT
CTACTCAAAGGAAAATGGTAAAGTAAGAAGTTACGATGACTTACATTATT
CGGCATTACCCTTGGTGGCAGCAAACATTTTTAACTTTGTATTTGTAATA
ATACCATCAAAGTCAGACTTACCAATGATGCCCGTTTTTCCTAGTATGGC
TGTTAATAGCTTCAAAAACATAATTTTTACGTTTTGTAATGGTGATGAAT
TCTTTCCTTTGGTTCCTATTGAAAAAGATGATGGTAACACCACAACAAAA
AATGTCACCCATAAAAAAATCAGGTGTTTTTGTGGTGAAAAGGTTAAAAA
TAAGCCGGGAAAGGTTAATTGTTATAAGAATTTTAGCTGTTCTTGCATCA
AAGCAAACCAACCATGCAACTCTTTGTGCAAATGTAAGAAATGTGGAAAT
GAAAAGCCAGTAATAAGTGAGCCAGATAGAAAACGACGAAAGAGAACGCT
TCATGATTTTTCCTTTAAAAGATCTGGCACATCTTTGGAATATTTGTTAA
ATTTGGGGGAGAAACCTAAAGATGAATTTGTGAGCAGCGTTCAGCATTTC
ATTTTAGAGGCTGTTGTTCATTTTGCTGTTTTTGAACTACAGAATAATGA
CTGGTTTTTTAAAGAACAAGAAGAAACTGTATGTGATAGAGTTTATCAAC
TTTTGATATCCATAAAGTCAGAAGACTCAAGTTTTTCTGTTTTTTTTGAC
TTGGAAAAAGCTTTAGTTCTCAAATGGATCAAAAGTAGAAGAGTGAAACA
TGAAATAATGATTCAAAAGCATTAATTTAT Coding sequence (CDS) from alignment at scaffold_330:367354..370033- >TCONS_00059741 ID=TCONS_00059741|Name=TCONS_00059741|organism=Clytia hemisphaerica|type=CDS|length=3162bp|location=Sequence derived from alignment at scaffold_330:367354..370033- (Clytia hemisphaerica) AGGCATCCAAGATAGTTTCCTTTGCAGAAATTCTCTCCGAGTTGAACCAG AAACTTCCCAAACAAATAACACAAAAGCTGTTCAGATATCAAGGATTCAC TACTCTTCCGATGGAGTGTTGGTCTTTACGTGAGTATTTCATTACTATAC ACAGTGGTGGAAATTTCGACCCCAACACTCTGCAAGCTGTCTTTAAAAGT ATGGAATTGGAGAAAAAAGAGACAGATGGAACATTTTTAGTATTTTTACT CGAAGCACTAAAATTTGGCTGCAAAACATATGATTTGCCATCTTCTCTGA TAAATTACGTCAACGACTTGTTAGAACACAAAGATCCAATATCAGAATTG AAAGCAGCTTTTGATGAAGAAATACTTAGCCCAAGAAATTCTCTCTACTC AAAGGAAAATGGTAAAGTAAGAAGTTACGATGACTTACATTATTCGGCAT TACCCTTGGTGGCAGCAAACATTTTTAACTTTGTATTTGTAATAATACCA TCAAAGTCAGACTTACCAATGATGCCCGTTTTTCCTAGTATGGCTGTTAA TAGCTTCAAAAACATAATTTTTACGTTTTGTAATGGTGATGAATTCTTTC CTTTGGTTCCTATTGAAAAAGATGATGGTAACACCACAACAAAAAATGTC ACCCATAAAAAAATCAGGTGTTTTTGTGGTGAAAAGGTTAAAAATAAGCC GGGAAAGGTTAATTGTTATAAGAATTTTAGCTGTTCTTGCATCAAAGCAA ACCAACCATGCAACTCTTTGTGCAAATGTAAGAAATGTGGAAATGAAAAG CCAGTAATAAGTGAGCCAGATAGAAAACGACGAAAGAGAACGCTTCATGA TTTTTCCTTTAAAAGATCTGGCACATCTTTGGAATATTTGTTAAATTTGG GGGAGAAACCTAAAGATGAATTTGTGAGCAGCGTTCAGCATTTCATTTTA GAGGCTGTTGTTCATTTTGCTGTTTTTGAACTACAGAATAATGACTGGTT TTTTAAAGAACAAGAAGAAACTGTATGTGATAGAGTTTATCAACTTTTGA TATCCATAAAGTCAGAAGACTCAAGTTTTTCTGTTTTTTTTGACTTGGAA AAAGCTTTAGTTCTCAAATGGATCAAAAGTAGAAGAGTGAAACATGAAAT AATGATTCAAAAGCATTAATCTTTTCTTGAGAAATGGAAAAATCTCAATT TTAATGGCTGGAATCTAATGAATATCAAAGCCTTAGATGAATTTAGGAAA TTAAGAATCCATGTAGAGAAAGGCTGTCTATCAGGGATTCCACCAGGAAT GGGAACCAATCGAAATGAAGCCCTACACAGGTTCCTTGGTCAATTCAAAA GAAACAGGCTATCAGTTGAATCTGCTACTGCAATCATTAACCTTATACTC TACACAAGTAATTGCAAGAAACATGGTTGTCAGATTGTCCCACCTATATG GAGTCAGTATCCAAATTCAAGCCAAAAAGTCTCCATCTCAACCCCAATGC CAAAAGAATCAAAAGAAAACCCACAAAGAAATGATTATCACATCACAGAA TACTCTGAGCACGACTATTATCATCAGTCTGAGGCATCCAAGATAGTTTC CTTTGCAGAAATTCTCTCCGAGTTGAACCAGAAACTTCCCAAACAAATAA CACAAAAGCTGTTCAGATATCAAGGATTCACTACTCTTCCGATGGAGTGT TGGTCTTTACGTGAGTATTTCATTACTATACACAGTGGTGGAAATTTCGA CCCCAACACTCTGCAAGCTGTCTTTAAAAGTATGGAATTGGAGAAAAAAG AGACAGATGGAACATTTTTAGTATTTTTACTCGAAGCACTAAAATTTGGC TGCAAAACATATGATTTGCCATCTTCTCTGATAAATTACGTCAACGACTT GTTAGAACACAAAGATCCAATATCAGAATTGAAAGCAGCTTTTGATGAAG AAATACTTAGCCCAAGAAATTCTCTCTACTCAAAGGAAAATGGTAAAGTA AGAAGTTACGATGACTTACATTATTCGGCATTACCCTTGGTGGCAGCAAA CATTTTTAACTTTGTATTTGTAATAATACCATCAAAGTCAGACTTACCAA TGATGCCCGTTTTTCCTAGTATGGCTGTTAATAGCTTCAAAAACATAATT TTTACGTTTTGTAATGGTGATGAATTCTTTCCTTTGGTTCCTATTGAAAA AGATGATGGTAACACCACAACAAAAAATGTCACCCATAAAAAAATCAGGT GTTTTTGTGGTGAAAAGGTTAAAAATAAGCCGGGAAAGGTTAATTGTTAT AAGAATTTTAGCTGTTCTTGCATCAAAGCAAACCAACCATGCAACTCTTT GTGCAAATGTAAGAAATGTGGAAATGAAAAGCCAGTAATAAGTGAGCCAG ATAGAAAACGACGAAAGAGAACGCTTCATGATTTTTCCTTTAAAAGATCT GGCACATCTTTGGAATATTTGTTAAATTTGGGGGAGAAACCTAAAGATGA ATTTGTGAGCAGCGTTCAGCATTTCATTTTAGAGGCTGTTGTTCATTTTG CTGTTTTTGAACTACAGAATAATGACTGGTTTTTTAAAGAACAAGAAGAA ACTGTATGTGATAGAGTTTATCAACTTTTGATATCCATAAAGTCAGAAGA CTCAAGTTTTTCTGTTTTTTTTGACTTGGAAAAAGCTTTAGTTCTCAAAT GGATCAAAAGTAGAAGAGTGAAACATGAAATAATGATTCAAAAGCATTAA TCTTTTCTTGAGAAATGGAAAAATCTCAATTTTAATGGCTGGAATCTAAT GAATATCAAAGCCTTAGATGAATTTAGGAAATTAAGAATCCATGTAGAGA AAGGCTGTCTATCAGGGATTCCACCAGGAATGGGAACCAATCGAAATGAA GCCCTACACAGGTTCCTTGGTCAATTCAAAAGAAACAGGCTATCAGTTGA ATCTGCTACTGCAATCATTAACCTTATACTCTACACAAGTAATTGCAAGA AACATGGTTGTCAGATTGTCCCACCTATATGGAGTCAGTATCCAAATTCA AGCCAAAAAGTCTCCATCTCAACCCCAATGCCAAAAGAATCAAAAGAAAA CCCACAAAGAAATGATTATCACATCACAGAATACTCTGAGCACGACTATT ATCATCAGTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00059741-exon-scaffold_330-1575043694:369621..370033 | TCONS_00059741-exon-scaffold_330-1575043694:369621..370033 | Clytia hemisphaerica | exon |
TCONS_00059741-exon-scaffold_330-1575043694:367354..368527 | TCONS_00059741-exon-scaffold_330-1575043694:367354..368527 | Clytia hemisphaerica | exon |
TCONS_00059741-exon-scaffold_330-1510915933:369621..370033 | TCONS_00059741-exon-scaffold_330-1510915933:369621..370033 | Clytia hemisphaerica | exon |
TCONS_00059741-exon-scaffold_330-1510915933:367354..368527 | TCONS_00059741-exon-scaffold_330-1510915933:367354..368527 | Clytia hemisphaerica | exon |
TCONS_00059741-exon-scaffold_330-1491911889:369621..370033 | TCONS_00059741-exon-scaffold_330-1491911889:369621..370033 | Clytia hemisphaerica | exon |
TCONS_00059741-exon-scaffold_330-1491911889:367354..368527 | TCONS_00059741-exon-scaffold_330-1491911889:367354..368527 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_330 | supercontig | scaffold_330:367354..370033 - |
Blast
The following BLAST results are available for this feature:
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