TCONS_00059740 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059740
Unique NameTCONS_00059740
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length404

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059740 ID=TCONS_00059740|Name=TCONS_00059740|organism=Clytia hemisphaerica|type=transcript|length=404bp
AGACTTTGAAAATGAGAATGCAAATGAAGAGGAGAaaggaacaacaacaa
caaaacaagatACCCACGGGAAGAGAATTGTCAAAACTAAATGGAAAGAT
GTGAAGAGAAAGTACAATGGAAATGAATCTGAAGATGAGCAAAAAGaCGT
GGGACATCTTGAAAGATCAAAAAAGACAAAGCAAACAAGAGAAGCGTACA
AGCTGAAAGACAATTTGACGAGGAACGAAATAGTGCACGGAAAGAGGACA
CGCTAATACCTCATGGTTTCgtagttttttattattttatttgttcttct
tttattctgttcttattatttttattttcattttatttgttccTTAGTTA
AATGGGAGTATGCTTACTCAAGCATCaaataatgaattttgaaaaacatc
ttTG
Run BLAST on NCBI

transcript from alignment at scaffold_330:363187..367121-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059740 ID=TCONS_00059740|Name=TCONS_00059740|organism=Clytia hemisphaerica|type=transcript|length=3935bp|location=Sequence derived from alignment at scaffold_330:363187..367121- (Clytia hemisphaerica)
AGACTTTGAAAATGAGAATGCAAATGAAGAGGAGAAAGGAACAACAACAA
CAAAACAAGATACCCACGGGAAGAGAATTGTCAAAACTAAATGGAAAGGT
AAGATTTTGAAACCATTCAAGTAAAGCTCAAGAGTCAAATTGTTCAATTT
ATGAATTATGAAGAGTCTATCAAATCAGAACAATAGTGAGATGGACAAAT
CTCTTTTTCCTACTTGCACATAGAAGGGTTTTATACAACTAATTTTTACA
GGGTTCCCGCAACATTTAAATTCTCAAAAATGAGGAGATTTGAGGACAAT
TGAGGAGAAATTTTCCCTTTTTAAGGAGATTAACAAAGAAAAATTGAGGA
GATTTTGATAAATTTTCAGGAAAATTGAGGAGATTTAAAACAGAGTGTCA
CCCAGGTTTAGGTATACCCTAAAGAAATTACTTAGGCACCTCCAAGTATC
TAGGTATCCCATTATAGATATGAGATTTTTAGCTAGCCCTAAAATTTGGT
ACCTACAAAGAAAATATGCTCATTTAGGTACCCCTTTGCTTTCCTTATCA
ACTATAGGTAGGTAGGTAGGTAGGTATTACAATATTGACCCCACGCCACA
ATACTTGTTCTAGATTTATGTTTCTTGTAAACCCTCCAAACTGATTAGAT
CGGCTCCCACACCCTCGCCGATGAACTTAAAAAGGCACCCCCGGAAATTT
GGACTGTTTTTAGTCCTCCTGCTTATTTTTAGTTTCCCCCAAATATTTTA
CTATACAAAAGAAGTCCGTCAAAAAGACTAGCATACAAAAAACTAATGTA
TAAAGAGAAGAAATATAAAGTGAAGTGTAAAATTGTTCTTGCGAGCGAAG
CGAGCAGAAAATTTGTCAAGAAACATAATTCAACATAGCCAAAATAAAAA
AAAAACATTAAGTAAACTATCAAATCCTTCTTCATGAATTTCACATAGGG
AGATTTGAGGAGAATTGAGGAGCAAAATCGAAAATGAGGAGATTTAAGGA
GTTTTGAGGAGCTGTGGGAACCCTGTTTTATAACCAGTCGCTGGTTAATA
ATTTCTTTCTTTAATTTAAGATGTGAAGAGAAAGTACAATGGAAATGAAT
CTGAAGATGAGCAAAAAGGTAGGGTTGTGGATTTCAAGTGTTTAAAAGTA
CTAAAATATAGGATTAAAAATATTTTTCAAAATCAGGGACCATTATTTTG
CTCATTATATCATATTTTCATTTCTGATTTTCAAATGTTTTATGGTTTCT
CCGAAATGGGGCTAAAAAGGACAGACAAAATTTAGGACTTGAAAATTGGA
ACAAATTTTTTTGTCAATTTCGTTGCAGGTGAAATTGGATAATTCTCCTA
AAATTTCCCTGAATTTTTCTTTAAACAGACGTGGGACATCTTGAAAGATC
AAAAAAGACAAAGCAAACAAGAGGTAAATATCAGTTATATGTAGCCTGTA
TTTATCCCAACTTCAGAATTGAAAAAGTTTGTTCTTCTAGTCAAAACATT
TGAAGGCTAAACTTTGGTGGCTGTTACCTTAAAACCCTATTCGTACTAGG
CTTTTAGTGGGAGTTCAAAACAGGGGGGGGGGTCAAAATTCAGCGCTTTA
CACGAAAATAACAGTTGACAATAAATGATTTTCAAATTAATTTATAAAGG
TCAGCCAAAATAGTCTAGAGAGCATAGATGAATTAACAAAATAAAATATG
CGCTGACGTGCCAAGAGGTGTAAATGTCAAATGCTAGGAAAGGAAAGCTA
GCACAAAAATAATTAGCAATGTACAGCGTCTATCATAAGGTTTTAAACTT
ATTTTAAATAGCAAAAAATCTCCAGTATGACAGTAAAACTTTTGTTTTAA
CCCCTCTCAATGATTTCGAATGGTCTGTTTGCATACTAGATTGTAACAAT
AACTGACCCTTATTTACATCAACCTATTGATAGTTAGGCGAGACCAATTT
AATTTATTGTTCTACGGGCAGATGGTAAAACAAATATGGGTCGGTCGGTC
GGGATAATAAAAATGATAATTTCGAATTCAAGGGTCGGTAAAAAAAATAC
TAAAGAAAAGTTTCTCCCTGTTTTTACCCTTGCTTTTGATTACCGAAAAT
GTCTAAATGTCTAAGACGTTGATTAACTGAGTTAATTGATTGATAAATTG
GAGTCGGTAAATATTCGTTCAGAAGTTAGATAAAACTTTCTTTTTTCAAA
AGTTAACAAGTGGTATTTTAGAATTAAAATGCATATATTTTTTTTTTTTT
TTCTTTCTGGCAAAGACAGGGTCGGTCGGGCCCGTAGAACAATAAATTAA
ATTGGTCTCACCTTATATTACACAATAATATATTTAAAAACATGTAATAA
AGTAACAGAACTGGTATGTTTTATAACGATAAAGCTTTTCTGAAAGTTTC
ATGTAATTTGGTTCACCGAATGAAAAGTTATGACCGTTCAAAGTTTACTG
ACACGCTCATGCATCATAGTCCAGTAGAATTTCGTCGAACATAGGGTCAA
CCTGGAAAAAATTATTCTAAAAGGTTTCTATATACCGTTGGAAAGATAAT
TTCATCAGCTTTCGAATGCCGAATATGGTCATATTTTTCCTCTTGGGCAA
AAAAAGTTATGACCCAAAGAATGAGAGGGGTCTTTTTAGGTAGCGAGCCC
TTAGAAACGTCAATTTTAAAGTTTTAAATTGATTTATTTTGACTGTTCCA
TCTGATAGAGCTCGAAGAGTAAATGTCTAAAAATGGGGTAATTTGTAAAA
TTTCGTCAACCACATCCCGAGAAAATCAAAATTGCTTAAAAATGGTAGTT
TTTCTTGCTGAGATGAATGAGGGGTTAAAACCATTTTCAACAGAAGCTCC
TCAATGAGTACTGTCGATTAAAGGTATATATGACTCAGCATATTTTAGCG
TTTTGGCTGTCAGCAAAATCTAAGTCAAATATCTCGAGATCTAGACATGC
AATCTCAACAAACTATACCTTTAATCGACAGTACTCATTGATGGATGGAT
GGATGGATGTTGTTGACAAAATTTTACAAATGACCCCATTTTAGCCATTT
ACTCTTCGAGCTCTATCAGATGGAACAGTCAAAATAAATCAATTTAAAAC
TATAAAATTGACGTTTCTAAGGGCTCGCTACCTAAAAAGACCCCTCTTAT
TCTTTGGGTCATAACTTTTTTTGCCCAAAAGGAAAAGAATGACCATATTC
GGCATTCGAAAGCTGATGAAATTATCTTTCCAACGGTATATAGAAGAAAC
CTTTTATAATAATTTTTTTCTAGGTTGACTCCAAATTCTACAGGACTATC
ATCTTATTTTCAACTAAAGAGAAACTAAAATCATGGTGAATTTGTTTATA
AGCAACTTAGTTTTAAGCCCTTTTAAGACTTTTAAAATTTTACTTGGCAA
CCATGGCCATGAAGCTGATAAAACAGTCTATTTTTACCAAAAGTGCCTAA
AAACGATAATTAAACAATATATACTAGGTATTTGTAGTCCTTTTTATTGG
CAATTTAGGTACTAAATAAAATTCTGGGGTAATTTATAAAAACTATTGAT
TGTTCCAGAAAGAAATTGTGCATAGTGGGCTTTTCTCATAATTTACTTCA
GGCTTTGTTGCATGTTGGTGAAAATAGGCACCTAAATAGAGCTTAGTTTT
TGGCGATTTTCATACATGGCAGATAAAACTATTTATATGGTTGCGTTTAT
AATTTTCATTCTGTTAATTTAGAAGCGTACAAGCTGAAAGACAATTTGAC
GAGGAACGAAATAGTGCACGGAAAGAGGACACGCTAATACCTCATGGTTT
CGTAGTTTTTTATTATTTTATTTGTTCTTCTTTTATTCTGTTCTTATTAT
TTTTATTTTCATTTTATTTGTTCCTTAGTTAAATGGGAGTATGCTTACTC
AAGCATCAAATAATGAATTTTGAAAAACATCTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037576XLOC_037576Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059740-exon-scaffold_330-1575043694:367024..367121TCONS_00059740-exon-scaffold_330-1575043694:367024..367121Clytia hemisphaericaexon
TCONS_00059740-exon-scaffold_330-1575043694:366004..366051TCONS_00059740-exon-scaffold_330-1575043694:366004..366051Clytia hemisphaericaexon
TCONS_00059740-exon-scaffold_330-1575043694:365699..365743TCONS_00059740-exon-scaffold_330-1575043694:365699..365743Clytia hemisphaericaexon
TCONS_00059740-exon-scaffold_330-1575043694:363187..363399TCONS_00059740-exon-scaffold_330-1575043694:363187..363399Clytia hemisphaericaexon
TCONS_00059740-exon-scaffold_330-1510915933:367024..367121TCONS_00059740-exon-scaffold_330-1510915933:367024..367121Clytia hemisphaericaexon
TCONS_00059740-exon-scaffold_330-1510915933:366004..366051TCONS_00059740-exon-scaffold_330-1510915933:366004..366051Clytia hemisphaericaexon
TCONS_00059740-exon-scaffold_330-1510915933:365699..365743TCONS_00059740-exon-scaffold_330-1510915933:365699..365743Clytia hemisphaericaexon
TCONS_00059740-exon-scaffold_330-1510915933:363187..363399TCONS_00059740-exon-scaffold_330-1510915933:363187..363399Clytia hemisphaericaexon
TCONS_00059740-exon-scaffold_330-1491911889:367024..367121TCONS_00059740-exon-scaffold_330-1491911889:367024..367121Clytia hemisphaericaexon
TCONS_00059740-exon-scaffold_330-1491911889:366004..366051TCONS_00059740-exon-scaffold_330-1491911889:366004..366051Clytia hemisphaericaexon
TCONS_00059740-exon-scaffold_330-1491911889:365699..365743TCONS_00059740-exon-scaffold_330-1491911889:365699..365743Clytia hemisphaericaexon
TCONS_00059740-exon-scaffold_330-1491911889:363187..363399TCONS_00059740-exon-scaffold_330-1491911889:363187..363399Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_330supercontigscaffold_330:363187..367121 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059740 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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