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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059734 ID=TCONS_00059734|Name=TCONS_00059734|organism=Clytia hemisphaerica|type=transcript|length=2444bpRun BLAST on NCBI protein sequence of TCONS_00059734-protein >TCONS_00059734-protein ID=TCONS_00059734-protein|Name=TCONS_00059734-protein|organism=Clytia hemisphaerica|type=polypeptide|length=394bp QVMHDGSVTWWESLIMVCMYIGYIILMKCNPRIVDKINSRKKRAQPDVSFRun BLAST on NCBI transcript from alignment at scaffold_330:319350..332507- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059734 ID=TCONS_00059734|Name=TCONS_00059734|organism=Clytia hemisphaerica|type=transcript|length=13158bp|location=Sequence derived from alignment at scaffold_330:319350..332507- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_330:319350..332507- >TCONS_00059734 ID=TCONS_00059734|Name=TCONS_00059734|organism=Clytia hemisphaerica|type=CDS|length=16590bp|location=Sequence derived from alignment at scaffold_330:319350..332507- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059734 vs. Swiss-Prot (Human)
Match: NCKX4 (Sodium/potassium/calcium exchanger 4 OS=Homo sapiens GN=SLC24A4 PE=1 SV=2) HSP 1 Score: 308.916 bits (790), Expect = 2.373e-93 Identity = 165/408 (40.44%), Postives = 250/408 (61.27%), Query Frame = 3
Query: 9 MHDGSVTWWESLIMVCMYIGYIILMKCNPRIVDKINSRKKRAQPDVSFTNNGDKSSCLVDNEEALKGSSAKEEL-LLPKVEFSPDDERGQR-RNDLLPAGSRRRLTWKELGMMIMMTDKFSPTTRFRAACLVVILRGEHKSATPEEKEKILRKNEANDNYQTVNNGDIEGHGGDDDRE------------------ESIEGTPFLYPQGSIVRIIFWILSLPLVIILYFTIPDCRKPKWEAWYILTFILSIFWICIFSYVMVWMVSLIGFTFGIPDVIMGLVFLAAGTSIPDAISSLLVAKEGLGDMAVSNSIGSNVFDILIGLAVPWFIRTAMVNPGSTVHLNSRGMVFSVALLFASVLFTVLVIHLNKWKLDKKLGIIFFLVYLVFITFSSLIEFNVFGFVNYPVC 1172
++D + WWE L+++ +Y+ YI++MK N ++ ++K S N +S L + GS + LL +V+ P + D + + S + T+ E G+ IM+T+KF P TR R A ++I + + K N ++ + NG++ +D ++ E+ +PF P+ ++ W+ + PL+ +L TIP+C KP+WE ++++TFI + WI +FSY+MVW+V++IG+T GIPDVIMG+ FLAAGTS+PD ++SL+VA++GLGDMAVSN+IGSNVFDIL+GL VPW ++T +VN GSTV +NSRG+V+SV LL SV TVL IHLNKW+LD+KLG+ ++Y +F+ FS +IEFNVF FVN P+C
Sbjct: 221 IYDEQIVWWEGLVLIILYVFYILIMKYNVKMQAFFTVKQK------SIANGNPVNSELEAGNDFYDGSYDDPSVPLLGQVKEKPQYGKNPVVMVDEIMSSSPPKFTFPEAGLRIMITNKFGPRTRLRMASRIII---NERQRLINSANGVSSKPLQNGRHENIENGNVPVENPEDPQQNQEQQPPPQPPPPEPEPVEADFLSPFSVPEARGDKVK-WVFTWPLIFLLCVTIPNCSKPRWEKFFMVTFITATLWIAVFSYIMVWLVTIIGYTLGIPDVIMGITFLAAGTSVPDCMASLIVARQGLGDMAVSNTIGSNVFDILVGLGVPWGLQTMVVNYGSTVKINSRGLVYSVVLLLGSVALTVLGIHLNKWRLDRKLGVYVLVLYAIFLCFSIMIEFNVFTFVNLPMC 618 The following BLAST results are available for this feature:
BLAST of TCONS_00059734 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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