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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059713 ID=TCONS_00059713|Name=TCONS_00059713|organism=Clytia hemisphaerica|type=transcript|length=3119bpRun BLAST on NCBI protein sequence of TCONS_00059713-protein >TCONS_00059713-protein ID=TCONS_00059713-protein|Name=TCONS_00059713-protein|organism=Clytia hemisphaerica|type=polypeptide|length=801bp MVINSKSKIITKVNIRKAKQQKQAADKMIEKNRPLLIRAYSAESSGGYSYRun BLAST on NCBI transcript from alignment at scaffold_330:504734..517078+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059713 ID=TCONS_00059713|Name=TCONS_00059713|organism=Clytia hemisphaerica|type=transcript|length=12345bp|location=Sequence derived from alignment at scaffold_330:504734..517078+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_330:504734..517078+ >TCONS_00059713 ID=TCONS_00059713|Name=TCONS_00059713|organism=Clytia hemisphaerica|type=CDS|length=28872bp|location=Sequence derived from alignment at scaffold_330:504734..517078+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059713 vs. Swiss-Prot (Human)
Match: ARHGP (Rho guanine nucleotide exchange factor 25 OS=Homo sapiens GN=ARHGEF25 PE=1 SV=2) HSP 1 Score: 166.007 bits (419), Expect = 9.944e-43 Identity = 113/346 (32.66%), Postives = 177/346 (51.16%), Query Frame = 2
Query: 1337 EKEALMRRDLVLTEMADTEKNYVDDLAFIINEYFPLMDKDEVSEDLNGDFEKIFGNIQEIYKFHSRIFSEKIEDCLEDPQLLNETFCQYEDELATLYSQYCKCKPYADEALHNHQDE-IDMLRRKYLPKVKFLLKDYLVTPVQRLMKYQLLLITAKKYSEKSVAHKIVIKDAIEVMDRVPKLANDAMHVELIKGYEGFLQSED-LLFQEVIEVDPAPKDN--KCKPREMRVFIFDSMVMFCDIVP---RKGQLAVYKYVGSGQTSLMGITETIQNEPYSFAIFFRKF-NSTNIYQCKADNKQTKDEWIQVLKDVIALQMIIMN----------RASQHTSLDRIDG 2320
+K+AL R VL+E+ +TEK YVDDL I+ Y M V E L G +FGNIQ+IY++H F ++++ CL+DP L + F ++E L +Y YC+ KP ++ + D + LR++ +++ L D L+ PVQR+MKYQLLL KY ++ ++ A+EVM VPK ND M + ++G+EG L ++ LL Q+ V + RE RVF+F+ +++F + + R G Y Y S + S +G+ +Q +P FA+ R Y +A + WI+ + ++ Q +N R SQ SL R G
Sbjct: 154 KKKALERSMYVLSELVETEKMYVDDLGQIVEGYMATMAAQGVPESLRGRDRIVFGNIQQIYEWHRDYFLQELQRCLKDPDWLAQLFIKHERRL-HMYVVYCQNKPKSEHVVSEFGDSYFEELRQQLGHRLQ--LNDLLIKPVQRIMKYQLLLKDFLKYYNRAGMDTADLEQAVEVMCFVPKRCNDMMTLGRLRGFEGKLTAQGKLLGQDTFWVTEPEAGGLLSSRGRERRVFLFEQIIIFSEALGGGVRGGTQPGYVYKNSIKVSCLGLEGNLQGDPCRFALTSRGPEGGIQRYVLQAADPAISQAWIKHVAQILESQRDFLNALQSPIEYQRRESQTNSLGRPRG 496 The following BLAST results are available for this feature:
BLAST of TCONS_00059713 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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