Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059712 ID=TCONS_00059712|Name=TCONS_00059712|organism=Clytia hemisphaerica|type=transcript|length=2454bpRun BLAST on NCBI transcript from alignment at scaffold_330:492919..517078+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059712 ID=TCONS_00059712|Name=TCONS_00059712|organism=Clytia hemisphaerica|type=transcript|length=24160bp|location=Sequence derived from alignment at scaffold_330:492919..517078+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00059712 vs. Swiss-Prot (Human)
Match: ARHGP (Rho guanine nucleotide exchange factor 25 OS=Homo sapiens GN=ARHGEF25 PE=1 SV=2) HSP 1 Score: 136.732 bits (343), Expect = 1.568e-33 Identity = 80/215 (37.21%), Postives = 123/215 (57.21%), Query Frame = 3 Query: 822 EKEALMRRDLVLTEMADTEKNYVDDLAFIINEYFPLMDKDEVSEDLNGDFEKIFGNIQEIYKFHSRIFSEKIEDCLEDPQLLNETFCQYEDELATLYSQYCKCKPYADEALHNHQDE-IDMLRRKYLPKVKFLLKDYLVTPVQRLMKYQLLLITAKKYSEKSVAHKIVIKDAIEVMDRVPKLANDAMHVELIKGYEGFLQSEDLLFQTSLMGITE 1463 +K+AL R VL+E+ +TEK YVDDL I+ Y M V E L G +FGNIQ+IY++H F ++++ CL+DP L + F ++E L +Y YC+ KP ++ + D + LR++ +++ L D L+ PVQR+MKYQLLL KY ++ ++ A+EVM VPK ND M + ++G+EG L ++ L +TE Sbjct: 154 KKKALERSMYVLSELVETEKMYVDDLGQIVEGYMATMAAQGVPESLRGRDRIVFGNIQQIYEWHRDYFLQELQRCLKDPDWLAQLFIKHERRL-HMYVVYCQNKPKSEHVVSEFGDSYFEELRQQLGHRLQ--LNDLLIKPVQRIMKYQLLLKDFLKYYNRAGMDTADLEQAVEVMCFVPKRCNDMMTLGRLRGFEGKLTAQGKLLGQDTFWVTE 365 The following BLAST results are available for this feature:
BLAST of TCONS_00059712 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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