TCONS_00059705 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059705
Unique NameTCONS_00059705
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length796

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059705 ID=TCONS_00059705|Name=TCONS_00059705|organism=Clytia hemisphaerica|type=transcript|length=796bp
CATAGATATTTTGGTGTATGTCCTCATCCAATGTTTGCAAACAAGACAAT
TCTTCACCCTCATTTCTAATCCCTACCACTCCATCAGATAATTCACGACA
CAAGACACGACTCACAATAAATGATTCGCAAGAGGTTTGGATTAACACAT
GGAAGAAACTCTGTCATTCACTGCAAAACGAAGAGCTTAATAGTTGTAAT
GCCTATTACAAGGAAGGCAAGGAGATAATGATCTACCATCGCGGTCACCA
ACAAGCTCAAGTAAGGTTGTCATTTTGTATAGCCACTGTCGATtgttttt
taagagttttatcttaatattttaaggaaaaatatgAGCCTAATCAAGAA
ATCTGATAGACCAGGCAGGATAAACATGTTTGTTATTTCAGAATGAAATT
TTAATCGTACGTCAATTAAACGAGCTTGGGCAGTTGTCTTCAAAATTCTA
AATAGCAAACTGCATAAAATTATATACTTGAGAAATTTTGATATGATTTG
AGCAGTAAAATTCATTTGGTATAGGTTTGCAGTCTTCAAAATTATGACCC
ATGCAGCTTGAATTAAAAGTCAACAAATTGAAGAgtcgtttttgttgttt
taaggTTGGACAATGGATTTGGGATCACGTGACCTGTGATTATTCCAAAC
GAACTTCTCCTGTACTCAAGTGATTTTCTTCAAAGATTGTAACGAGCCTC
CCTTATTGGTAAAGTCTTGGTAAAGTGGTACaagtcaatcatttttaatc
GTTTACATTTTATCTCAAATTTGATATGCATGGTTTTAAGAGgaca
Run BLAST on NCBI

transcript from alignment at scaffold_330:427867..429281+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059705 ID=TCONS_00059705|Name=TCONS_00059705|organism=Clytia hemisphaerica|type=transcript|length=1415bp|location=Sequence derived from alignment at scaffold_330:427867..429281+ (Clytia hemisphaerica)
CATAGATATTTTGGTGTATGTCCTCATCCAATGTTTGCAAACAAGACAAT
TCTTCACCCTCATTTCTAATCCCTACCACTCCATCAGATAATTCACGACA
CAAGACACGACTCACAATAAATGGTATTAGAAAATTTACACTCATTTCAC
CATTATGACAGAAATTGGTGTTTTTAATGGAGAACGGTGAATTCTCCAAC
AAACTCGTTGAGCTTTTTCGCGATTTCTATTGCTATCTGCTTTGAATCAC
ACATCTTTAGTCTTTAATCAAAAACTTGATCGACATATTTGTTTTCCCCT
TGCTTTAGATTCGCAAGAGGTTTGGATTAACACATGGAAGAAACTCTGTC
ATTCACTGCAAAACGAAGAGCTTAATAGTTGTAATGCCTATTACAAGGTA
TCTTTGAATCATATTTGCAAGcatcagaaaattattttgcaaaaagtCAG
TGTTGCAACTTTACCGTCTGTAGACGGAAATCCGTCCAGCTGAGATACAC
TATTTCCGTCCTTTCAGCagtaatgatttttttcaaaggaCTCACTAAAC
CAAAGATTTTTAACAAATTCCGTCCATAGTTACAAAACCTGGTTGCAACA
Ctgaaaaagtgcatttttgaaaaatactcaaattctttttgaaattacag
aaaaaaagaagaaaaaatcacaaaaaaaattcataacagCGAAAAGTCtt
cttcaaaatattaaaagtttGCAGAATTTTAGATAAGCGCGTGAAACCTG
AAAATGTCAATATTCTAAAgtgtaaattgatttttaaagtaATTTATATT
TATACGTTACGCATAAGCTTTTGTTTTGCAGGAAGGCAAGGAGATAATGA
TCTACCATCGCGGTCACCAACAAGCTCAAGTAAGGTTGTCATTTTGTATA
GCCACTGTCGATtgttttttaagagttttatcttaatattttaaggaaaa
atatgAGCCTAATCAAGAAATCTGATAGACCAGGCAGGATAAACATGTTT
GTTATTTCAGAATGAAATTTTAATCGTACGTCAATTAAACGAGCTTGGGC
AGTTGTCTTCAAAATTCTAAATAGCAAACTGCATAAAATTATATACTTGA
GAAATTTTGATATGATTTGAGCAGTAAAATTCATTTGGTATAGGTTTGCA
GTCTTCAAAATTATGACCCATGCAGCTTGAATTAAAAGTCAACAAATTGA
AGAgtcgtttttgttgttttaaggTTGGACAATGGATTTGGGATCACGTG
ACCTGTGATTATTCCAAACGAACTTCTCCTGTACTCAAGTGATTTTCTTC
AAAGATTGTAACGAGCCTCCCTTATTGGTAAAGTCTTGGTAAAGTGGTAC
aagtcaatcatttttaatcGTTTACATTTTATCTCAAATTTGATATGCAT
GGTTTTAAGAGgaca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037559XLOC_037559Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059705-exon-scaffold_330-1491911889:427867..427989TCONS_00059705-exon-scaffold_330-1491911889:427867..427989Clytia hemisphaericaexon
TCONS_00059705-exon-scaffold_330-1510915933:427867..427989TCONS_00059705-exon-scaffold_330-1510915933:427867..427989Clytia hemisphaericaexon
TCONS_00059705-exon-scaffold_330-1575043694:427867..427989TCONS_00059705-exon-scaffold_330-1575043694:427867..427989Clytia hemisphaericaexon
TCONS_00059705-exon-scaffold_330-1491911889:428175..428263TCONS_00059705-exon-scaffold_330-1491911889:428175..428263Clytia hemisphaericaexon
TCONS_00059705-exon-scaffold_330-1510915933:428175..428263TCONS_00059705-exon-scaffold_330-1510915933:428175..428263Clytia hemisphaericaexon
TCONS_00059705-exon-scaffold_330-1575043694:428175..428263TCONS_00059705-exon-scaffold_330-1575043694:428175..428263Clytia hemisphaericaexon
TCONS_00059705-exon-scaffold_330-1491911889:428698..429281TCONS_00059705-exon-scaffold_330-1491911889:428698..429281Clytia hemisphaericaexon
TCONS_00059705-exon-scaffold_330-1510915933:428698..429281TCONS_00059705-exon-scaffold_330-1510915933:428698..429281Clytia hemisphaericaexon
TCONS_00059705-exon-scaffold_330-1575043694:428698..429281TCONS_00059705-exon-scaffold_330-1575043694:428698..429281Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_330supercontigscaffold_330:427867..429281 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.112605	0	0.281512	0	0.107806	0.433713	0.438607	0	0.235016	0.590411	0.796631	0.249086	0.788055	0.273268	0.43546	0.34342	0.621401	0.554968	0.409697	0.736896	0.630042	0	0.580562	0	0	0.721653	0.402412	0	0.382795	0.16313
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059705 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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