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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059702 ID=TCONS_00059702|Name=TCONS_00059702|organism=Clytia hemisphaerica|type=transcript|length=1199bp
CACGGTTCTAGCTGAATTAACCCTGCCACATTTCGGAGAATGCGATCAAT
TTCCAGTGGATTGTTTAAATGAAGGATGCGAGGTCAACCTTCCAAGAATC
GAGatgaaaaataaacatgGTCCAGCATGCAAGTGGGAAAGAGTCGGATG
TCAGTTTGAAGACTTCGGTTGTCAAACCAAGCTATTACGATCAGAAGAAG
TCAAGCACAACAATGAGTTCAATATTCAACACACCATGTTATTGATGGCC
AAACAGAGAGAAACACTAAACGATCTTCAAACGACCAAAAACGATCTTCA
AACGACCAAAAACGAACTTCAGACAACAACAACCGATCTCCAAACAACGA
AAAACGATCTCCAAACGACGAAAAACGAGCTGCTAGAATCGAAAAAATCA
TTAGAGGAACAAAAGAATCTCAATAAGGAAATAGTCAACAATATCAACAG
ATTGCATGTTGCAAATTCTTCCGTCGAAAGCCTTTTATCACTTCTTGTAA
ATGGAGACATACCTCGCGCACACACAAAGCCGATTGTATACGATGGTGTG
GAATTTTGCTCTTCATTAGGAAACCACCAACAAATGATGAATACCATTCT
TTCCAAGATGGAATTCGGTAAAACTTACAAAACAGATCTTGGAAAAcgtt
tattttttacatttcgAATGATTCATGACGTCACGTTGTATTTTCAACTA
TACAACAATTATGATCTTGCTTCCACCAGAGAGTCTTACCGAAAACAAAA
TATGTTAGTTGATGGGAGGGACCAACTTATTCTTGTATACTTCGATAAAA
ATCGAGGTGATCAATACCAAGTTTGGATGAATAACCGCGACTTCACTAAA
ACAAATTCGTCCGTTTTTCTACACAATATGAAAAAGAATGGTGACCGACG
ACAAATTAGGTATCATGTACTTGAGAACATCGCTTGGGATGACTATAGAA
ACGAAGATAAAtatgttctttttgaattgatGAAGAAATGATTCAAACTG
GATAATATTTCAAAGAGACGCGTTAGAGTGAACTGGGGACGAGGTTGTCA
AAAAATGAAATGGTCAAGTCATGCATTATGCAACATGTttggaaaaacat
tttcttaatGATTAAACAATTTGAGTACTATCTATATACATTTACATCTG
AAAAGTTAACAATTAATAATATATTCTACACTATTCTTCTTGCATGAAA Run BLAST on NCBI transcript from alignment at scaffold_330:413123..415922+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059702 ID=TCONS_00059702|Name=TCONS_00059702|organism=Clytia hemisphaerica|type=transcript|length=2800bp|location=Sequence derived from alignment at scaffold_330:413123..415922+ (Clytia hemisphaerica)
CACGGTTCTAGCTGAATTAACCCTGGTAGTTTTTGAATTCTTGTGGAAGG
ATTTTTTCTTTCTACTCAACATTTTATGTAAAATGCACTGTAGGGTACCT
TTTCATTGTTCAAGGGCTGcacgattttgaaagccattgTTTTGGCGGCA
CGTgacgtcgtttagaaatcgagtgcctcCCCCCACCGGGACTGCCTCAA
ATAGATTCTCATCAAATGTTCGATTTCTTCGATTTTTCAGCCACATTTCG
GAGAATGCGATCAATTTCCAGTGGATTGTTTAAATGAAGGATGCGAGGTC
AACCTTCCAAGAATCGAGGTATTCCTCGTTTGATATTGCTCTTATTTCTT
TACTggttaaattttcattatttacaTGCTTACCGGTGCTCTTACGTACG
TACCCAcattaataaaacaaaaaatcacaaatattaTTATTTCAACAATA
ACTTAGGGGAATATTTTCACGGAATTCAATTTCGCGGTTGAGTGAACATT
TTATTTAtaatatggcctattttgccctaaaatagTTTAAAAACGAAAAC
GACGAAAATTTGTTCCACGAATATTTCTTCACTTATGGTAAAACTTTGAG
TTTTTGTTAGACATCTAGTCTCTATCAAACGTTCAATTTTCTAAGGATCG
CGAAACCCAGCATCCATCAACCCTACACCACCCTCCAAGCATTCCAGTGT
TATACAACCAGGTTTTTCATCTCAAAAACAAAACTACAGAAAATTGTCac
attttttgggattttctttCCAAGAAGTCTGCTTTATAGGCGTATTTGCG
ATTTTTTCAAAGCTATCAAGTACCAATCTAACGTCCTCCTCCATTTTCAC
CTCGTTCTTGAAATAAAGTATAACCTCGCAGGTTCAAGAACATTCTTCCT
CATTTTGGAATATTCAATTGTAACATTCTGATGCTACCCCAGCTATTTCC
TTCCTCGTCGAATTCGAGGGACTGTTCATTCAACGCCTCCCTTTATCAGA
CGCCAGAGTAATCCCTTTACAGGTTAtataaactttttcatttatttcag
atgaaaaataaacatgGTCCAGCATGCAAGTGGGAAAGAGTCGGATGTCA
GTTTGAAGACTTCGGTTGTCAAACCAAGGTATCAAATCATTTTTGTCATT
GCAATGTACTGAATATTTCTGTTCAAAATATATCTCAAATCTTATTTGAT
ATAATACTTTCACAGGGAATCGAAGCTTCAATTGAGGGACAAGAGGTTAG
GGTTACTGGCGACATTTTGTGGGTAGTCACTTGATTGCGGTGTGAGAGTG
TAAGAGAAGAAGTTTTGGCAAATGAACCCATCActaattttggtgcaatt
tagcgagaattaattttggcgaacgatcaatttttgttcaatattttagc
tgaaaaagagtgaaaaaagggtttttaggaaaaatagagatactaaaatg
aaagaaaattgaatttggtGAGaatttattttcgcggatgacctATAATC
AATTATGataatttaaatttctttcctGACGGTATTTCCTAAGCCCTCTG
ATGTTCATTTCACCTGCCTTGGCTATTGTACAAAGGTATACACCCTCTGA
GTCGAGTCTGTTCTACCTCTATGAGTGACCCAAGTATATCAGCCACGTTT
GTATATAGCACTTGATCAATACACATGGTCGAACGGTacccttttctttt
tttgccgacgaCTAGTTTGCAAGCTTTcatgttcaaatttttttctctca
ttgTTAATGTTTTCTAATCATCCCTGTTATAGCTATTACGATCAGAAGAA
GTCAAGCACAACAATGAGTTCAATATTCAACACACCATGTTATTGATGGC
CAAACAGAGAGAAACACTAAACGATCTTCAAACGACCAAAAACGATCTTC
AAACGACCAAAAACGAACTTCAGACAACAACAACCGATCTCCAAACAACG
AAAAACGATCTCCAAACGACGAAAAACGAGCTGCTAGAATCGAAAAAATC
ATTAGAGGAACAAAAGAATCTCAATAAGGAAATAGTCAACAATATCAACA
GATTGCATGTTGCAAATTCTTCCGTCGAAAGCCTTTTATCACTTCTTGTA
AATGGAGACATACCTCGCGCACACACAAAGCCGATTGTATACGATGGTGT
GGAATTTTGCTCTTCATTAGGAAACCACCAACAAATGATGAATACCATTC
TTTCCAAGATGGAATTCGGTAAAACTTACAAAACAGATCTTGGAAAAcgt
ttattttttacatttcgAATGATTCATGACGTCACGTTGTATTTTCAACT
ATACAACAATTATGATCTTGCTTCCACCAGAGAGTCTTACCGAAAACAAA
ATATGTTAGTTGATGGGAGGGACCAACTTATTCTTGTATACTTCGATAAA
AATCGAGGTGATCAATACCAAGTTTGGATGAATAACCGCGACTTCACTAA
AACAAATTCGTCCGTTTTTCTACACAATATGAAAAAGAATGGTGACCGAC
GACAAATTAGGTATCATGTACTTGAGAACATCGCTTGGGATGACTATAGA
AACGAAGATAAAtatgttctttttgaattgatGAAGAAATGATTCAAACT
GGATAATATTTCAAAGAGACGCGTTAGAGTGAACTGGGGACGAGGTTGTC
AAAAAATGAAATGGTCAAGTCATGCATTATGCAACATGTttggaaaaaca
ttttcttaatGATTAAACAATTTGAGTACTATCTATATACATTTACATCT
GAAAAGTTAACAATTAATAATATATTCTACACTATTCTTCTTGCATGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059702-exon-scaffold_330-1491911889:413123..413147 | TCONS_00059702-exon-scaffold_330-1491911889:413123..413147 | Clytia hemisphaerica | exon |
| TCONS_00059702-exon-scaffold_330-1510915933:413123..413147 | TCONS_00059702-exon-scaffold_330-1510915933:413123..413147 | Clytia hemisphaerica | exon |
| TCONS_00059702-exon-scaffold_330-1575043694:413123..413147 | TCONS_00059702-exon-scaffold_330-1575043694:413123..413147 | Clytia hemisphaerica | exon |
| TCONS_00059702-exon-scaffold_330-1491911889:413363..413440 | TCONS_00059702-exon-scaffold_330-1491911889:413363..413440 | Clytia hemisphaerica | exon |
| TCONS_00059702-exon-scaffold_330-1510915933:413363..413440 | TCONS_00059702-exon-scaffold_330-1510915933:413363..413440 | Clytia hemisphaerica | exon |
| TCONS_00059702-exon-scaffold_330-1575043694:413363..413440 | TCONS_00059702-exon-scaffold_330-1575043694:413363..413440 | Clytia hemisphaerica | exon |
| TCONS_00059702-exon-scaffold_330-1491911889:414173..414250 | TCONS_00059702-exon-scaffold_330-1491911889:414173..414250 | Clytia hemisphaerica | exon |
| TCONS_00059702-exon-scaffold_330-1510915933:414173..414250 | TCONS_00059702-exon-scaffold_330-1510915933:414173..414250 | Clytia hemisphaerica | exon |
| TCONS_00059702-exon-scaffold_330-1575043694:414173..414250 | TCONS_00059702-exon-scaffold_330-1575043694:414173..414250 | Clytia hemisphaerica | exon |
| TCONS_00059702-exon-scaffold_330-1491911889:414905..415922 | TCONS_00059702-exon-scaffold_330-1491911889:414905..415922 | Clytia hemisphaerica | exon |
| TCONS_00059702-exon-scaffold_330-1510915933:414905..415922 | TCONS_00059702-exon-scaffold_330-1510915933:414905..415922 | Clytia hemisphaerica | exon |
| TCONS_00059702-exon-scaffold_330-1575043694:414905..415922 | TCONS_00059702-exon-scaffold_330-1575043694:414905..415922 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_330 | supercontig | scaffold_330:413123..415922 + |
Blast
The following BLAST results are available for this feature:
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