TCONS_00059702 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059702
Unique NameTCONS_00059702
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1199

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059702 ID=TCONS_00059702|Name=TCONS_00059702|organism=Clytia hemisphaerica|type=transcript|length=1199bp
CACGGTTCTAGCTGAATTAACCCTGCCACATTTCGGAGAATGCGATCAAT
TTCCAGTGGATTGTTTAAATGAAGGATGCGAGGTCAACCTTCCAAGAATC
GAGatgaaaaataaacatgGTCCAGCATGCAAGTGGGAAAGAGTCGGATG
TCAGTTTGAAGACTTCGGTTGTCAAACCAAGCTATTACGATCAGAAGAAG
TCAAGCACAACAATGAGTTCAATATTCAACACACCATGTTATTGATGGCC
AAACAGAGAGAAACACTAAACGATCTTCAAACGACCAAAAACGATCTTCA
AACGACCAAAAACGAACTTCAGACAACAACAACCGATCTCCAAACAACGA
AAAACGATCTCCAAACGACGAAAAACGAGCTGCTAGAATCGAAAAAATCA
TTAGAGGAACAAAAGAATCTCAATAAGGAAATAGTCAACAATATCAACAG
ATTGCATGTTGCAAATTCTTCCGTCGAAAGCCTTTTATCACTTCTTGTAA
ATGGAGACATACCTCGCGCACACACAAAGCCGATTGTATACGATGGTGTG
GAATTTTGCTCTTCATTAGGAAACCACCAACAAATGATGAATACCATTCT
TTCCAAGATGGAATTCGGTAAAACTTACAAAACAGATCTTGGAAAAcgtt
tattttttacatttcgAATGATTCATGACGTCACGTTGTATTTTCAACTA
TACAACAATTATGATCTTGCTTCCACCAGAGAGTCTTACCGAAAACAAAA
TATGTTAGTTGATGGGAGGGACCAACTTATTCTTGTATACTTCGATAAAA
ATCGAGGTGATCAATACCAAGTTTGGATGAATAACCGCGACTTCACTAAA
ACAAATTCGTCCGTTTTTCTACACAATATGAAAAAGAATGGTGACCGACG
ACAAATTAGGTATCATGTACTTGAGAACATCGCTTGGGATGACTATAGAA
ACGAAGATAAAtatgttctttttgaattgatGAAGAAATGATTCAAACTG
GATAATATTTCAAAGAGACGCGTTAGAGTGAACTGGGGACGAGGTTGTCA
AAAAATGAAATGGTCAAGTCATGCATTATGCAACATGTttggaaaaacat
tttcttaatGATTAAACAATTTGAGTACTATCTATATACATTTACATCTG
AAAAGTTAACAATTAATAATATATTCTACACTATTCTTCTTGCATGAAA
Run BLAST on NCBI

transcript from alignment at scaffold_330:413123..415922+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059702 ID=TCONS_00059702|Name=TCONS_00059702|organism=Clytia hemisphaerica|type=transcript|length=2800bp|location=Sequence derived from alignment at scaffold_330:413123..415922+ (Clytia hemisphaerica)
CACGGTTCTAGCTGAATTAACCCTGGTAGTTTTTGAATTCTTGTGGAAGG
ATTTTTTCTTTCTACTCAACATTTTATGTAAAATGCACTGTAGGGTACCT
TTTCATTGTTCAAGGGCTGcacgattttgaaagccattgTTTTGGCGGCA
CGTgacgtcgtttagaaatcgagtgcctcCCCCCACCGGGACTGCCTCAA
ATAGATTCTCATCAAATGTTCGATTTCTTCGATTTTTCAGCCACATTTCG
GAGAATGCGATCAATTTCCAGTGGATTGTTTAAATGAAGGATGCGAGGTC
AACCTTCCAAGAATCGAGGTATTCCTCGTTTGATATTGCTCTTATTTCTT
TACTggttaaattttcattatttacaTGCTTACCGGTGCTCTTACGTACG
TACCCAcattaataaaacaaaaaatcacaaatattaTTATTTCAACAATA
ACTTAGGGGAATATTTTCACGGAATTCAATTTCGCGGTTGAGTGAACATT
TTATTTAtaatatggcctattttgccctaaaatagTTTAAAAACGAAAAC
GACGAAAATTTGTTCCACGAATATTTCTTCACTTATGGTAAAACTTTGAG
TTTTTGTTAGACATCTAGTCTCTATCAAACGTTCAATTTTCTAAGGATCG
CGAAACCCAGCATCCATCAACCCTACACCACCCTCCAAGCATTCCAGTGT
TATACAACCAGGTTTTTCATCTCAAAAACAAAACTACAGAAAATTGTCac
attttttgggattttctttCCAAGAAGTCTGCTTTATAGGCGTATTTGCG
ATTTTTTCAAAGCTATCAAGTACCAATCTAACGTCCTCCTCCATTTTCAC
CTCGTTCTTGAAATAAAGTATAACCTCGCAGGTTCAAGAACATTCTTCCT
CATTTTGGAATATTCAATTGTAACATTCTGATGCTACCCCAGCTATTTCC
TTCCTCGTCGAATTCGAGGGACTGTTCATTCAACGCCTCCCTTTATCAGA
CGCCAGAGTAATCCCTTTACAGGTTAtataaactttttcatttatttcag
atgaaaaataaacatgGTCCAGCATGCAAGTGGGAAAGAGTCGGATGTCA
GTTTGAAGACTTCGGTTGTCAAACCAAGGTATCAAATCATTTTTGTCATT
GCAATGTACTGAATATTTCTGTTCAAAATATATCTCAAATCTTATTTGAT
ATAATACTTTCACAGGGAATCGAAGCTTCAATTGAGGGACAAGAGGTTAG
GGTTACTGGCGACATTTTGTGGGTAGTCACTTGATTGCGGTGTGAGAGTG
TAAGAGAAGAAGTTTTGGCAAATGAACCCATCActaattttggtgcaatt
tagcgagaattaattttggcgaacgatcaatttttgttcaatattttagc
tgaaaaagagtgaaaaaagggtttttaggaaaaatagagatactaaaatg
aaagaaaattgaatttggtGAGaatttattttcgcggatgacctATAATC
AATTATGataatttaaatttctttcctGACGGTATTTCCTAAGCCCTCTG
ATGTTCATTTCACCTGCCTTGGCTATTGTACAAAGGTATACACCCTCTGA
GTCGAGTCTGTTCTACCTCTATGAGTGACCCAAGTATATCAGCCACGTTT
GTATATAGCACTTGATCAATACACATGGTCGAACGGTacccttttctttt
tttgccgacgaCTAGTTTGCAAGCTTTcatgttcaaatttttttctctca
ttgTTAATGTTTTCTAATCATCCCTGTTATAGCTATTACGATCAGAAGAA
GTCAAGCACAACAATGAGTTCAATATTCAACACACCATGTTATTGATGGC
CAAACAGAGAGAAACACTAAACGATCTTCAAACGACCAAAAACGATCTTC
AAACGACCAAAAACGAACTTCAGACAACAACAACCGATCTCCAAACAACG
AAAAACGATCTCCAAACGACGAAAAACGAGCTGCTAGAATCGAAAAAATC
ATTAGAGGAACAAAAGAATCTCAATAAGGAAATAGTCAACAATATCAACA
GATTGCATGTTGCAAATTCTTCCGTCGAAAGCCTTTTATCACTTCTTGTA
AATGGAGACATACCTCGCGCACACACAAAGCCGATTGTATACGATGGTGT
GGAATTTTGCTCTTCATTAGGAAACCACCAACAAATGATGAATACCATTC
TTTCCAAGATGGAATTCGGTAAAACTTACAAAACAGATCTTGGAAAAcgt
ttattttttacatttcgAATGATTCATGACGTCACGTTGTATTTTCAACT
ATACAACAATTATGATCTTGCTTCCACCAGAGAGTCTTACCGAAAACAAA
ATATGTTAGTTGATGGGAGGGACCAACTTATTCTTGTATACTTCGATAAA
AATCGAGGTGATCAATACCAAGTTTGGATGAATAACCGCGACTTCACTAA
AACAAATTCGTCCGTTTTTCTACACAATATGAAAAAGAATGGTGACCGAC
GACAAATTAGGTATCATGTACTTGAGAACATCGCTTGGGATGACTATAGA
AACGAAGATAAAtatgttctttttgaattgatGAAGAAATGATTCAAACT
GGATAATATTTCAAAGAGACGCGTTAGAGTGAACTGGGGACGAGGTTGTC
AAAAAATGAAATGGTCAAGTCATGCATTATGCAACATGTttggaaaaaca
ttttcttaatGATTAAACAATTTGAGTACTATCTATATACATTTACATCT
GAAAAGTTAACAATTAATAATATATTCTACACTATTCTTCTTGCATGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037558XLOC_037558Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059702-exon-scaffold_330-1491911889:413123..413147TCONS_00059702-exon-scaffold_330-1491911889:413123..413147Clytia hemisphaericaexon
TCONS_00059702-exon-scaffold_330-1510915933:413123..413147TCONS_00059702-exon-scaffold_330-1510915933:413123..413147Clytia hemisphaericaexon
TCONS_00059702-exon-scaffold_330-1575043694:413123..413147TCONS_00059702-exon-scaffold_330-1575043694:413123..413147Clytia hemisphaericaexon
TCONS_00059702-exon-scaffold_330-1491911889:413363..413440TCONS_00059702-exon-scaffold_330-1491911889:413363..413440Clytia hemisphaericaexon
TCONS_00059702-exon-scaffold_330-1510915933:413363..413440TCONS_00059702-exon-scaffold_330-1510915933:413363..413440Clytia hemisphaericaexon
TCONS_00059702-exon-scaffold_330-1575043694:413363..413440TCONS_00059702-exon-scaffold_330-1575043694:413363..413440Clytia hemisphaericaexon
TCONS_00059702-exon-scaffold_330-1491911889:414173..414250TCONS_00059702-exon-scaffold_330-1491911889:414173..414250Clytia hemisphaericaexon
TCONS_00059702-exon-scaffold_330-1510915933:414173..414250TCONS_00059702-exon-scaffold_330-1510915933:414173..414250Clytia hemisphaericaexon
TCONS_00059702-exon-scaffold_330-1575043694:414173..414250TCONS_00059702-exon-scaffold_330-1575043694:414173..414250Clytia hemisphaericaexon
TCONS_00059702-exon-scaffold_330-1491911889:414905..415922TCONS_00059702-exon-scaffold_330-1491911889:414905..415922Clytia hemisphaericaexon
TCONS_00059702-exon-scaffold_330-1510915933:414905..415922TCONS_00059702-exon-scaffold_330-1510915933:414905..415922Clytia hemisphaericaexon
TCONS_00059702-exon-scaffold_330-1575043694:414905..415922TCONS_00059702-exon-scaffold_330-1575043694:414905..415922Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_330supercontigscaffold_330:413123..415922 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.58771	1.3549	0.698932	0.539592	1.4672	1.3404	2.18523	2.67795	0.873905	0	1.01703	0.381002	0	0	0	0	0	0	0	0	0	0	0.000726962	0	0	0	0	0.467311	0.131417	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059702 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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