Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059700 ID=TCONS_00059700|Name=TCONS_00059700|organism=Clytia hemisphaerica|type=transcript|length=2425bpRun BLAST on NCBI protein sequence of TCONS_00059700-protein >TCONS_00059700-protein ID=TCONS_00059700-protein|Name=TCONS_00059700-protein|organism=Clytia hemisphaerica|type=polypeptide|length=685bp MAKASADKDFDHLYKLVLVGDSGTGKTGLVSRFARDESNVNKQSTIGIDFRun BLAST on NCBI transcript from alignment at scaffold_330:408915..415922+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059700 ID=TCONS_00059700|Name=TCONS_00059700|organism=Clytia hemisphaerica|type=transcript|length=7008bp|location=Sequence derived from alignment at scaffold_330:408915..415922+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_330:408915..415922+ >TCONS_00059700 ID=TCONS_00059700|Name=TCONS_00059700|organism=Clytia hemisphaerica|type=CDS|length=16464bp|location=Sequence derived from alignment at scaffold_330:408915..415922+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059700 vs. Swiss-Prot (Human)
Match: RB11A (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3) HSP 1 Score: 196.823 bits (499), Expect = 2.670e-57 Identity = 94/193 (48.70%), Postives = 138/193 (71.50%), Query Frame = 1 Query: 178 DKDFDHLYKLVLVGDSGTGKTGLVSRFARDESNVNKQSTIGIDFKIRSIKAAGKTIKTQIWDTAGGERFRTITKAYYRGAVGVFIVYNVSVQKTFENVQRWLDDVREYSGPEVVLMLVGNQTVVEDSAAKEGSVNTKEAQEFAKQNHLMFMETSTLDGSNVELAFISMVQKIYEKQNKLEKDDEVELFQAPEN 756 D ++D+L+K+VL+GDSG GK+ L+SRF R+E N+ +STIG++F RSI+ GKTIK QIWDTAG ER+R IT AYYRGAVG +VY+++ T+ENV+RWL ++R+++ +V+MLVGN++ + A V T EA+ FA++N L F+ETS LD +NVE AF +++ +IY ++ + D E +P N Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA----VPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSN 193 The following BLAST results are available for this feature:
BLAST of TCONS_00059700 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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