TCONS_00059675 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059675
Unique NameTCONS_00059675
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length350

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059675 ID=TCONS_00059675|Name=TCONS_00059675|organism=Clytia hemisphaerica|type=transcript|length=350bp
GCAAGAATAAGAATAATAAACTAACAAAACAAATGAAGAAATAACAAAAT
GCTGACGCTGCAAAATTACCACATCCCCATCATATGTGCACATGGACACA
TGAACTGAAGATGGTCATCAATTTGTAATCAATACAATACCACGACGACG
TCTAATCTTTCAACATTGTTTTGTATGGATTAGTGTAAGGAGAAATCAGA
ACATATTACTTTCGTCAAATAGAAGAGAGTTGAGTTAAAGaTTTAATCAA
TGCGCACCCCATGGTTGTTTAAATCACGGTTGTCAAAAAAAAGACGATAT
ATAGATATGTTTAAATCAGAAAGgctgattttggagacatgatGGCATAG
Run BLAST on NCBI

transcript from alignment at scaffold_330:195051..200683+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059675 ID=TCONS_00059675|Name=TCONS_00059675|organism=Clytia hemisphaerica|type=transcript|length=5633bp|location=Sequence derived from alignment at scaffold_330:195051..200683+ (Clytia hemisphaerica)
GCAAGAATAAGAATAATAAACTAACAAAACAAATGAAGAAATAACAAAAT GCTGACGCTGCAAAATTACCACATCCCCATCATATGGTAAGTCagtcatc ttcattttcaatttcattggtCATAAGAGACCTTAGCATGTATTTATTAT ATATACTTCCCTCCTTCTCTCAACTCCgtggccgggtagctcagtcggta gagcattcgccttacaatctaagggttgtgggttcgatccccggtcaccg ccaactcagcggatgatAGCTTAgaagcttagattgggtaatctgatcta ggcggtaagttactgggagctgagagtaggNcacttgccaagtgaatcgt agtgccacggtgggtatcgaactcgagcCTTCTAGACAGAAgtcaagcac gataaccactacaccactacgccgtttttaataaaaaacaaaaatgcttc tGGTTATTTTGTTTGTCAATATTTCAGTTATTGTATTACTTTTACATTAT AGTGCACATGGACACATGAACTGAAGATGGTAGGGCACTTTGACTCCAAT GTTATGTCTATTACCTAAACTGAATAACTTACATAAATGCTTGCTATTAA TTGTATTAATACACTTATTTCAATGGCATGTTTTGTCAAACTTGACAAAT TATTAAAGGAGAGAGAAAGAATTATAAATTAGTTGGATATTCCCTTGCTA CAATTAGTTTGATTAGTTGTAGCGTTTTCCTGTTAAAACAAAGTATGAAC TTTTCATCCAATGTTTACTACCTATTCTAACAAGAAACTTTTTACATGTT TGTAATGTTTAATAGGTGTTCAGGAGTGTCCATTTTTATTTACTTGACCT ATGAATGGTCTTCGATTTATTTCTTGGTTTAGCGATTACAATACTGAGCG TTTTCCTTATTGTTTTAGGTCTTTTTATGTTGTTAATTCCTGTAGGGGTT GTGGTAAGTGGACTTTAGAtaaatgttgtttttctttctttttttcatcc gTATTTTTNGGTATGAAAATGTAGTCTAATATTTTTAGCTTAGCTTTATT ACTTACTCACAACTTATCTTTATAGAGCTTTCAATGTAAATaacttgtaa acaaaaaatcaaaaacgatTTATATTAAATGGTTACGTTTTACTTCATGT CTAGAGTCTCAAAGAAATATACGTTCGATAAATTAACCTGTCAAACCCCC TTTCCTAGACACGCCTCGTTATTTATCCTTGATATCtcatcatttttgcc actttgatcattcaaaatgtatttttcacAATAATTATCTTTCTTCGTTT AGCAAGAATAAGAATAATAAACTAACAAAACAAATGAAGAAATAACAAAA TGCTGACGCTGCAAAATTACCACATCCCCATCATATGGTAAGTCagtcat cttcattttcaatttcattggtCATAAGAGACCTTAGCATGTATTTATTA TATATACTTCCCTCCTTCTCTCAACTCCgtggccgggtagctcagtcggt agagcattcgccttacaatctaagggttgtgggttcgatccccggtcacc gccaactcagcggatgatAGCTTAgaagcttagattgggtaatctgatct aggcggtaagttactgggagctgagagtaggtgtggcgcccCACCTCAgt attcgatctcccaggtctagcgcaaatagaaaaggggatagactccctca ctcccggctccgccgacagccaacagatgaatatacttacttacttactt ctCTCCACTATTTCTCTCAGTTTGAACCACGCGTGATTTTGTGCAGAGAT GCTGGCTAAATCGATCTGGCCAGCCAGGGTGCAGTGCGCAGTGCTGATGA GTCCAGTAAAGACGAAATTCATACACCTGTTCTGTCCACctaatctcctg agtgaattaAGTCGGACAGAAATTCTtgatttcttcacatatatgtTTAA TACCTTTTATTCAACATTGCAAGTTAGGACTTCCAAAAAGTGTTGCTTTT ATTTTTCTACCCCTCGAATGAGTTATTGCTTACACTTTACATTACACCAG CACTTAGTATTGATTATACATTAGATAGAAGTATAGATAGTATAGATTGA ACGATTAGGGCTCAAACTCCCGTTGAAATTCTGCTAAGATGGTCAGACCG CTAACGCAGCATTGTGTAAAACATTATGATCAGGAAAACATATTACAATA TTTCAGTGATGACCTCTTGTGAGTGAGGTCGAATATTTAGTTTTTNTTTA GGTCTTTTTATGTTGTTAATTCCTGTAGGGGTTGTGGTAAGTGGACTTTA GAtaaatgttgtttttctttctttttttcatccgTATTTTTGCGTACCTT TTCCCTTAGGAATCCGAATGAGTTGTGATAGCTTACAAAATCTTTCTCTC ATTTTCGTCGTTATTTCGTTTGACAACTTCTACAATTTCATGTTATAGGT CATCAATTTGTAATCAATACAATACCACGACGACGTCTAATCTTTCAACA TTGTTTTGTATGGATTAGTGTAAGGAGAAATCAGAACATATTACTTTCGT CAAATAGAAGAGAGTTGAGTTAAAGGTATGAAATATGTCTCTTATTTATC TTTTGGAAAATGTATGAAGGTAAATTTTTTTAAGCTGCCTTCTTGGAACT TCTTGATCAAGCACATAAAGTTCAACATCGAATTAccttttcaacggtat ataacTATGAAACATTCTGTACCCTTTTTGGTACGGTAAATTTATATAAC TGGACATTCCACGTATGATCTTGATCCAGTGACATGATGTTGTCAGAGGT TTTAAAAATGGAGAATATTCTTTATAGGTGATAAGGTTCACAGTGTTTGT TCAATTTAACCCTGGCGTGTTATTAAATTAAGCCATTTCTCTAAAATAAA ACCGTGTGATAAATGATTAATTCCTTATCCCAGTGTTTCAGTCCCTAGTT ACACTTTCGCGAAATTACACATAAAGTATCCTCTTTCCCTTCTTTTACGA ATATCAgtacaaatttttaattttgtttggcCCTTTTTCGAAGCTAATGG TGACATTATTACATAATGTTTCATACGGAAACAGCCCGGTTTTTTACCCG TAATGACAAATCTAAACTAtacaaaaattgttcaaaatttgcCATTGTCA GGTGTTTCCGTTTCTTCAAAAGAAATCATGAATTATAATATAAGCAAATA AAGGTAATACGATGCCTCGTATTGAATGTAAGTACTGTATTTAGTTTTCA TACCGCCTTCCATAATTCTCCTACTGTAaatgcatacacgttttttataa gaatacattttataataacataaggtttcgatgaccaaaatattaaggac AACTtagaatatttcaaggcttcatggactttaaaacacctaatttctta ggaaattgcacaaaaatactcacaaaatagtaGAAATGCGaacagaacat tttaaagcttagAACTGAGGTTAAAAACTTGCGTTTATTTTCCTTTATGT GTCAAAGCACCACTCAAACTTGAGGGttgaaaaatacacaaaaatctTCT CATGACAAGTGTTTTAACACTCTAACCATcgtaaaagaaaacaaactcTT TCTATCATATGTTATAAAATAAACATACAGCTTTCTAACAAGTTCTTTCT CATGTTTTTGCACAGGCTGAATATTTCCGTAGTTGGGTAATCAAACATTT TGACTATGTGAATGGTTGAGAGGACGAGAGCCTATAAATAAGTAaacttt tagagaaaaaaaagcttttaaaatctCCTTACAAGAATTAGTGATTATCC CTTATCATATTTCATTGGATGTTCGTTTATGAGCAAATATTTACTGTTTG TTCGTGTTTCTTACACGNTTGGATGTTCGTTTATGAGCAAATATTTACGG TTTATTCGTGTTTCTTACACGTGAAAGCAAACAACATTTGTAACATGAAA TTGTTGTTGTGTAGTACTACATAGTATAAAGTTCTTCTTCTGTTTTTCGG ATCTGTTAAATCTGTTAAATTGAGGGATAATATTTGATGGTTGGTTTTGA TTGCATAAATTTCGGCTCGTTCTGATTTTTCCACTACATTTGAAGAATgt gcttttttcataagaaccaggGAATTCTCAGCTGTTCTtatgtttttggt gtttttgttgcTTGGAGtgttaaattgttcttattcttaTCTCTTATTCC TAACACNCTTATCATATTTCATTGGATGTTCGTTTATGAGCAAATATTTA CGGTTTATTCGTGTTTCTTACACGTGAAAGCAAACAACATTTGTAACATG AAATTGTTGTTGTGTAGTACTACATAGTATAAAGTTCTTCTTCTGTTTTT CGGATCTGTTAAATCGTTAAATCGAGAGATAATATTTGATGATTGGTTTT AATTGTATGAATTTTGGGTCGTTTCTAATTTTTCCACTTGTTTTGAAGAA TgtgcttttttcataagaactagGAAATTCTTATTAAGCTCAGCTGCTCT tatgtttttggttttggtgCTTGGAGcgttaaattgttcttattcctATC TTATTTTTAACGCGGAAATGGAGTTTCTTTTAAGCTTATACCCAATTTGT ACAATTTATTTTGACCCttctgacacccctgtctcacgtgtaccggtgga acttcttcccacagtcgggataaaaatttctattgaaatcccagggggtg atagaaattctattcttCCCAGGTCAGAAGATCCAGTTtcgatggttttg gagtgcaattttttccatCGAATTTCAAATTGGgatgaaaacattttcaa gtGGGTGAAATTGTAGGGCATCCTTCCCACCGGGGAGGAACTATTAGCAA AATTTTCCATTGTGAAAGTAGCCCAACCGGGTCTGGTACACAGGTTTGTC TTCTGCAATTAcgaaagtttcttgtttttttgGGGGGAAATCTGGCACTC AGATTGGCTCTTTAATGCAACATtcctggatgttcttattttttcctaaa tttcagcctaaatgttcttataaattaggTTCTAATGAAATGATGTAAAG CCAAAAACCTTCAAACCACCATCATCGCTCAAGTTTTCCTCCCTTCGACA GGTTCTTTCTGgacggaaaatttaaaataaagaaatccAGTCTTCATTCA AGTTTTGTGAAACATGAATGTTTAGtatgaaaatttcatatttgacaaaa gaatattttgttgGTACATACATTTTTAAAGAGGGTAAGGTCGAAGTTTA TCCCCTTCTTCAAAAGTTTTTCCgtaaatattgatattttacaATAACTT AGAGGCTCGAAAAAGTAAAGTGAAACGTTGAAAGGCTagacaaaaaaaat gtttttcgagaGACTTTAATCAAACCTTCTTTATGGCTTGCCTGCctgtg atattttttggattccTTCATTGTTTGGTTGGTATAGTTGTCAGACCTtg cattttgataaaaacatgaCGACCACGGTCAATTCCAATGGATTTATgcc aatctttttttttgtacttttagaTTTAATCAATGCGCACCCCATGGTTG TTTAAATCACGGTTGTCAAAAAAAAGACGATATATAGATATGTTTAAATC AGAAAGgctgattttggagacatgatGGCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037551XLOC_037551Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059675-exon-scaffold_330-1491911889:195051..195136TCONS_00059675-exon-scaffold_330-1491911889:195051..195136Clytia hemisphaericaexon
TCONS_00059675-exon-scaffold_330-1510915933:195051..195136TCONS_00059675-exon-scaffold_330-1510915933:195051..195136Clytia hemisphaericaexon
TCONS_00059675-exon-scaffold_330-1575043694:195051..195136TCONS_00059675-exon-scaffold_330-1575043694:195051..195136Clytia hemisphaericaexon
TCONS_00059675-exon-scaffold_330-1491911889:195553..195579TCONS_00059675-exon-scaffold_330-1491911889:195553..195579Clytia hemisphaericaexon
TCONS_00059675-exon-scaffold_330-1510915933:195553..195579TCONS_00059675-exon-scaffold_330-1510915933:195553..195579Clytia hemisphaericaexon
TCONS_00059675-exon-scaffold_330-1575043694:195553..195579TCONS_00059675-exon-scaffold_330-1575043694:195553..195579Clytia hemisphaericaexon
TCONS_00059675-exon-scaffold_330-1491911889:197499..197625TCONS_00059675-exon-scaffold_330-1491911889:197499..197625Clytia hemisphaericaexon
TCONS_00059675-exon-scaffold_330-1510915933:197499..197625TCONS_00059675-exon-scaffold_330-1510915933:197499..197625Clytia hemisphaericaexon
TCONS_00059675-exon-scaffold_330-1575043694:197499..197625TCONS_00059675-exon-scaffold_330-1575043694:197499..197625Clytia hemisphaericaexon
TCONS_00059675-exon-scaffold_330-1491911889:200574..200683TCONS_00059675-exon-scaffold_330-1491911889:200574..200683Clytia hemisphaericaexon
TCONS_00059675-exon-scaffold_330-1510915933:200574..200683TCONS_00059675-exon-scaffold_330-1510915933:200574..200683Clytia hemisphaericaexon
TCONS_00059675-exon-scaffold_330-1575043694:200574..200683TCONS_00059675-exon-scaffold_330-1575043694:200574..200683Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_330supercontigscaffold_330:195051..200683 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.693691 1.47218 0 0.278722 4.84967 11.7973 11.1007 7.87346 2.41547 0.913964 2.33689 1.37017 0.991716 0 1.00013 2.97512 1.52193 2.71043 0.267472 1.39945 2.91931 1.06795 0.288497 1.31143 0.400393 0 1.24471 0.736416 0.558546 0.56907
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059675 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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