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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059675 ID=TCONS_00059675|Name=TCONS_00059675|organism=Clytia hemisphaerica|type=transcript|length=350bp
GCAAGAATAAGAATAATAAACTAACAAAACAAATGAAGAAATAACAAAAT
GCTGACGCTGCAAAATTACCACATCCCCATCATATGTGCACATGGACACA
TGAACTGAAGATGGTCATCAATTTGTAATCAATACAATACCACGACGACG
TCTAATCTTTCAACATTGTTTTGTATGGATTAGTGTAAGGAGAAATCAGA
ACATATTACTTTCGTCAAATAGAAGAGAGTTGAGTTAAAGaTTTAATCAA
TGCGCACCCCATGGTTGTTTAAATCACGGTTGTCAAAAAAAAGACGATAT
ATAGATATGTTTAAATCAGAAAGgctgattttggagacatgatGGCATAG Run BLAST on NCBI transcript from alignment at scaffold_330:195051..200683+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059675 ID=TCONS_00059675|Name=TCONS_00059675|organism=Clytia hemisphaerica|type=transcript|length=5633bp|location=Sequence derived from alignment at scaffold_330:195051..200683+ (Clytia hemisphaerica)
GCAAGAATAAGAATAATAAACTAACAAAACAAATGAAGAAATAACAAAAT
GCTGACGCTGCAAAATTACCACATCCCCATCATATGGTAAGTCagtcatc
ttcattttcaatttcattggtCATAAGAGACCTTAGCATGTATTTATTAT
ATATACTTCCCTCCTTCTCTCAACTCCgtggccgggtagctcagtcggta
gagcattcgccttacaatctaagggttgtgggttcgatccccggtcaccg
ccaactcagcggatgatAGCTTAgaagcttagattgggtaatctgatcta
ggcggtaagttactgggagctgagagtaggNcacttgccaagtgaatcgt
agtgccacggtgggtatcgaactcgagcCTTCTAGACAGAAgtcaagcac
gataaccactacaccactacgccgtttttaataaaaaacaaaaatgcttc
tGGTTATTTTGTTTGTCAATATTTCAGTTATTGTATTACTTTTACATTAT
AGTGCACATGGACACATGAACTGAAGATGGTAGGGCACTTTGACTCCAAT
GTTATGTCTATTACCTAAACTGAATAACTTACATAAATGCTTGCTATTAA
TTGTATTAATACACTTATTTCAATGGCATGTTTTGTCAAACTTGACAAAT
TATTAAAGGAGAGAGAAAGAATTATAAATTAGTTGGATATTCCCTTGCTA
CAATTAGTTTGATTAGTTGTAGCGTTTTCCTGTTAAAACAAAGTATGAAC
TTTTCATCCAATGTTTACTACCTATTCTAACAAGAAACTTTTTACATGTT
TGTAATGTTTAATAGGTGTTCAGGAGTGTCCATTTTTATTTACTTGACCT
ATGAATGGTCTTCGATTTATTTCTTGGTTTAGCGATTACAATACTGAGCG
TTTTCCTTATTGTTTTAGGTCTTTTTATGTTGTTAATTCCTGTAGGGGTT
GTGGTAAGTGGACTTTAGAtaaatgttgtttttctttctttttttcatcc
gTATTTTTNGGTATGAAAATGTAGTCTAATATTTTTAGCTTAGCTTTATT
ACTTACTCACAACTTATCTTTATAGAGCTTTCAATGTAAATaacttgtaa
acaaaaaatcaaaaacgatTTATATTAAATGGTTACGTTTTACTTCATGT
CTAGAGTCTCAAAGAAATATACGTTCGATAAATTAACCTGTCAAACCCCC
TTTCCTAGACACGCCTCGTTATTTATCCTTGATATCtcatcatttttgcc
actttgatcattcaaaatgtatttttcacAATAATTATCTTTCTTCGTTT
AGCAAGAATAAGAATAATAAACTAACAAAACAAATGAAGAAATAACAAAA
TGCTGACGCTGCAAAATTACCACATCCCCATCATATGGTAAGTCagtcat
cttcattttcaatttcattggtCATAAGAGACCTTAGCATGTATTTATTA
TATATACTTCCCTCCTTCTCTCAACTCCgtggccgggtagctcagtcggt
agagcattcgccttacaatctaagggttgtgggttcgatccccggtcacc
gccaactcagcggatgatAGCTTAgaagcttagattgggtaatctgatct
aggcggtaagttactgggagctgagagtaggtgtggcgcccCACCTCAgt
attcgatctcccaggtctagcgcaaatagaaaaggggatagactccctca
ctcccggctccgccgacagccaacagatgaatatacttacttacttactt
ctCTCCACTATTTCTCTCAGTTTGAACCACGCGTGATTTTGTGCAGAGAT
GCTGGCTAAATCGATCTGGCCAGCCAGGGTGCAGTGCGCAGTGCTGATGA
GTCCAGTAAAGACGAAATTCATACACCTGTTCTGTCCACctaatctcctg
agtgaattaAGTCGGACAGAAATTCTtgatttcttcacatatatgtTTAA
TACCTTTTATTCAACATTGCAAGTTAGGACTTCCAAAAAGTGTTGCTTTT
ATTTTTCTACCCCTCGAATGAGTTATTGCTTACACTTTACATTACACCAG
CACTTAGTATTGATTATACATTAGATAGAAGTATAGATAGTATAGATTGA
ACGATTAGGGCTCAAACTCCCGTTGAAATTCTGCTAAGATGGTCAGACCG
CTAACGCAGCATTGTGTAAAACATTATGATCAGGAAAACATATTACAATA
TTTCAGTGATGACCTCTTGTGAGTGAGGTCGAATATTTAGTTTTTNTTTA
GGTCTTTTTATGTTGTTAATTCCTGTAGGGGTTGTGGTAAGTGGACTTTA
GAtaaatgttgtttttctttctttttttcatccgTATTTTTGCGTACCTT
TTCCCTTAGGAATCCGAATGAGTTGTGATAGCTTACAAAATCTTTCTCTC
ATTTTCGTCGTTATTTCGTTTGACAACTTCTACAATTTCATGTTATAGGT
CATCAATTTGTAATCAATACAATACCACGACGACGTCTAATCTTTCAACA
TTGTTTTGTATGGATTAGTGTAAGGAGAAATCAGAACATATTACTTTCGT
CAAATAGAAGAGAGTTGAGTTAAAGGTATGAAATATGTCTCTTATTTATC
TTTTGGAAAATGTATGAAGGTAAATTTTTTTAAGCTGCCTTCTTGGAACT
TCTTGATCAAGCACATAAAGTTCAACATCGAATTAccttttcaacggtat
ataacTATGAAACATTCTGTACCCTTTTTGGTACGGTAAATTTATATAAC
TGGACATTCCACGTATGATCTTGATCCAGTGACATGATGTTGTCAGAGGT
TTTAAAAATGGAGAATATTCTTTATAGGTGATAAGGTTCACAGTGTTTGT
TCAATTTAACCCTGGCGTGTTATTAAATTAAGCCATTTCTCTAAAATAAA
ACCGTGTGATAAATGATTAATTCCTTATCCCAGTGTTTCAGTCCCTAGTT
ACACTTTCGCGAAATTACACATAAAGTATCCTCTTTCCCTTCTTTTACGA
ATATCAgtacaaatttttaattttgtttggcCCTTTTTCGAAGCTAATGG
TGACATTATTACATAATGTTTCATACGGAAACAGCCCGGTTTTTTACCCG
TAATGACAAATCTAAACTAtacaaaaattgttcaaaatttgcCATTGTCA
GGTGTTTCCGTTTCTTCAAAAGAAATCATGAATTATAATATAAGCAAATA
AAGGTAATACGATGCCTCGTATTGAATGTAAGTACTGTATTTAGTTTTCA
TACCGCCTTCCATAATTCTCCTACTGTAaatgcatacacgttttttataa
gaatacattttataataacataaggtttcgatgaccaaaatattaaggac
AACTtagaatatttcaaggcttcatggactttaaaacacctaatttctta
ggaaattgcacaaaaatactcacaaaatagtaGAAATGCGaacagaacat
tttaaagcttagAACTGAGGTTAAAAACTTGCGTTTATTTTCCTTTATGT
GTCAAAGCACCACTCAAACTTGAGGGttgaaaaatacacaaaaatctTCT
CATGACAAGTGTTTTAACACTCTAACCATcgtaaaagaaaacaaactcTT
TCTATCATATGTTATAAAATAAACATACAGCTTTCTAACAAGTTCTTTCT
CATGTTTTTGCACAGGCTGAATATTTCCGTAGTTGGGTAATCAAACATTT
TGACTATGTGAATGGTTGAGAGGACGAGAGCCTATAAATAAGTAaacttt
tagagaaaaaaaagcttttaaaatctCCTTACAAGAATTAGTGATTATCC
CTTATCATATTTCATTGGATGTTCGTTTATGAGCAAATATTTACTGTTTG
TTCGTGTTTCTTACACGNTTGGATGTTCGTTTATGAGCAAATATTTACGG
TTTATTCGTGTTTCTTACACGTGAAAGCAAACAACATTTGTAACATGAAA
TTGTTGTTGTGTAGTACTACATAGTATAAAGTTCTTCTTCTGTTTTTCGG
ATCTGTTAAATCTGTTAAATTGAGGGATAATATTTGATGGTTGGTTTTGA
TTGCATAAATTTCGGCTCGTTCTGATTTTTCCACTACATTTGAAGAATgt
gcttttttcataagaaccaggGAATTCTCAGCTGTTCTtatgtttttggt
gtttttgttgcTTGGAGtgttaaattgttcttattcttaTCTCTTATTCC
TAACACNCTTATCATATTTCATTGGATGTTCGTTTATGAGCAAATATTTA
CGGTTTATTCGTGTTTCTTACACGTGAAAGCAAACAACATTTGTAACATG
AAATTGTTGTTGTGTAGTACTACATAGTATAAAGTTCTTCTTCTGTTTTT
CGGATCTGTTAAATCGTTAAATCGAGAGATAATATTTGATGATTGGTTTT
AATTGTATGAATTTTGGGTCGTTTCTAATTTTTCCACTTGTTTTGAAGAA
TgtgcttttttcataagaactagGAAATTCTTATTAAGCTCAGCTGCTCT
tatgtttttggttttggtgCTTGGAGcgttaaattgttcttattcctATC
TTATTTTTAACGCGGAAATGGAGTTTCTTTTAAGCTTATACCCAATTTGT
ACAATTTATTTTGACCCttctgacacccctgtctcacgtgtaccggtgga
acttcttcccacagtcgggataaaaatttctattgaaatcccagggggtg
atagaaattctattcttCCCAGGTCAGAAGATCCAGTTtcgatggttttg
gagtgcaattttttccatCGAATTTCAAATTGGgatgaaaacattttcaa
gtGGGTGAAATTGTAGGGCATCCTTCCCACCGGGGAGGAACTATTAGCAA
AATTTTCCATTGTGAAAGTAGCCCAACCGGGTCTGGTACACAGGTTTGTC
TTCTGCAATTAcgaaagtttcttgtttttttgGGGGGAAATCTGGCACTC
AGATTGGCTCTTTAATGCAACATtcctggatgttcttattttttcctaaa
tttcagcctaaatgttcttataaattaggTTCTAATGAAATGATGTAAAG
CCAAAAACCTTCAAACCACCATCATCGCTCAAGTTTTCCTCCCTTCGACA
GGTTCTTTCTGgacggaaaatttaaaataaagaaatccAGTCTTCATTCA
AGTTTTGTGAAACATGAATGTTTAGtatgaaaatttcatatttgacaaaa
gaatattttgttgGTACATACATTTTTAAAGAGGGTAAGGTCGAAGTTTA
TCCCCTTCTTCAAAAGTTTTTCCgtaaatattgatattttacaATAACTT
AGAGGCTCGAAAAAGTAAAGTGAAACGTTGAAAGGCTagacaaaaaaaat
gtttttcgagaGACTTTAATCAAACCTTCTTTATGGCTTGCCTGCctgtg
atattttttggattccTTCATTGTTTGGTTGGTATAGTTGTCAGACCTtg
cattttgataaaaacatgaCGACCACGGTCAATTCCAATGGATTTATgcc
aatctttttttttgtacttttagaTTTAATCAATGCGCACCCCATGGTTG
TTTAAATCACGGTTGTCAAAAAAAAGACGATATATAGATATGTTTAAATC
AGAAAGgctgattttggagacatgatGGCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059675-exon-scaffold_330-1491911889:195051..195136 | TCONS_00059675-exon-scaffold_330-1491911889:195051..195136 | Clytia hemisphaerica | exon |
| TCONS_00059675-exon-scaffold_330-1510915933:195051..195136 | TCONS_00059675-exon-scaffold_330-1510915933:195051..195136 | Clytia hemisphaerica | exon |
| TCONS_00059675-exon-scaffold_330-1575043694:195051..195136 | TCONS_00059675-exon-scaffold_330-1575043694:195051..195136 | Clytia hemisphaerica | exon |
| TCONS_00059675-exon-scaffold_330-1491911889:195553..195579 | TCONS_00059675-exon-scaffold_330-1491911889:195553..195579 | Clytia hemisphaerica | exon |
| TCONS_00059675-exon-scaffold_330-1510915933:195553..195579 | TCONS_00059675-exon-scaffold_330-1510915933:195553..195579 | Clytia hemisphaerica | exon |
| TCONS_00059675-exon-scaffold_330-1575043694:195553..195579 | TCONS_00059675-exon-scaffold_330-1575043694:195553..195579 | Clytia hemisphaerica | exon |
| TCONS_00059675-exon-scaffold_330-1491911889:197499..197625 | TCONS_00059675-exon-scaffold_330-1491911889:197499..197625 | Clytia hemisphaerica | exon |
| TCONS_00059675-exon-scaffold_330-1510915933:197499..197625 | TCONS_00059675-exon-scaffold_330-1510915933:197499..197625 | Clytia hemisphaerica | exon |
| TCONS_00059675-exon-scaffold_330-1575043694:197499..197625 | TCONS_00059675-exon-scaffold_330-1575043694:197499..197625 | Clytia hemisphaerica | exon |
| TCONS_00059675-exon-scaffold_330-1491911889:200574..200683 | TCONS_00059675-exon-scaffold_330-1491911889:200574..200683 | Clytia hemisphaerica | exon |
| TCONS_00059675-exon-scaffold_330-1510915933:200574..200683 | TCONS_00059675-exon-scaffold_330-1510915933:200574..200683 | Clytia hemisphaerica | exon |
| TCONS_00059675-exon-scaffold_330-1575043694:200574..200683 | TCONS_00059675-exon-scaffold_330-1575043694:200574..200683 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_330 | supercontig | scaffold_330:195051..200683 + |
Blast
The following BLAST results are available for this feature:
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