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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059634 ID=TCONS_00059634|Name=TCONS_00059634|organism=Clytia hemisphaerica|type=transcript|length=1713bp
aattttggtttttgggtcaTCGGAATCACAAAAACGTGATCTTTCACGTG
ATCTTATTTTCAGTGCGCAAATATTCTGCTCTGAAGTAAATTGGTGAAAC
GTACAGAATTCTCCTAGTTTAGGTAACGTTCTCTTAAATAAGAGactgaa
aatctcctaaataaggTAATCCTCTAACTTGGGTATTCTCTTATTTAGGG
TATAATCCTCGACTGAGTTTTTGATTACTTTCGATCATATTGATATTGAA
TACCTTCCATTGTATTGAGTACTTTCCAGCCTTCGATTTTATCAAATATG
TTTCCAGTAGCAGCGCGTCACAATAATCTGAAACCAAGTTTACTTCAGCC
AATTAAAACACGGGATTCACGTGCGAAAACCACTTTCGTTTTCTCTGACC
AATCAGAATGCGGAAGGCACACAAAATGGCACGTAAAAAATAAGGGGGTC
AATCTTTATGGCCGGGCTTCTTTTTGTGCTTTGGTTTTAGGTCAGTTTTT
TTGGTTTTTCTTAAAGATATATGATTAATTGGTTATCGAAGTAATCAATT
GGTTTTCGAAAGTAATCAATAACAATCAAAGTACTCGAACGGTTATCGAG
ACTTGGAAGGGTTGTTAAGAAAGTGATCGAAAATACTCGCAATTTTTTTG
AAATTTTGGTACTCAATATTTGATTGTTAATCAATAAGTGGTTGTTCGAT
TACTTCTataatcgaatttatcgatTAGGTGTATATGTACCGCAGAATAC
AACAGTACCGCAGCAGACAGAatacatttttttagttttcgctgtttttt
ttgaagaaaattactTACagccttaattttttttttctaaatttgctGAG
ATGaatcatatttttaaattataaacAATCCAGGTGTTACCATATATAAA
TTTAACTCCgcctaaattttaaaattctgagaaaatttttttttgttcaa
tgaAATTCTTTGATGATTACAGACATTGTGAAAAACACATGTATTTTGCG
GTACATACACCTGTATCCGatatctgcaacaaaaacgaaagggGTCTCTT
CTTACTGATTGCTTCCAGGCTCCTTCGAAACTGTTTataaaatttccacc
aatgagattgccgcATTTCAcatggcccttctttttggcacccgtggcct
caCTAAATCcgtgatcctaaggcttagcttttttctcatcttcaatttac
tgaagaaagcgggaatttgatgcgagagtttagattgtcaacaaataaag
tgccataaaaaatcattagataaaagaagaactttaaaatcttaaatatt
ttcatttttgaagaattggtgcaaaaaagtgaaacatggaagagtttcat
tttttattggttcaatcAAAATAGAGGATTTGGGaaactttctatgtttg
ttttttgctcaaacccctgtaactatgggcaagcaccctgttgctaagat
gttggcttgaaatcaaaagtgaaaccactgaaaatgaaagtaaaatcggc
cggCACTCCAAAGTCCACGTAATCTTGATATGGGAGTTTAAGCATAGACT
GTTTGAATTTATATGACCATTGTGATCACAAAATCATCCAACGGACACTT
TGAAATTATTCATGATTTACCCTGATAATTTTTCTTACTTACCGAATACT
TACCGAATCTTTTGACGTTTAAGTCGGTGGAAAGTGGGAGAAAATATACC
CAAACCTTCCTAT Run BLAST on NCBI transcript from alignment at scaffold_329:580298..582010 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059634 ID=TCONS_00059634|Name=TCONS_00059634|organism=Clytia hemisphaerica|type=transcript|length=1713bp|location=Sequence derived from alignment at scaffold_329:580298..582010 (Clytia hemisphaerica)
ATAGGAAGGTTTGGGTATATTTTCTCCCACTTTCCACCGACTTAAACGTC
AAAAGATTCGGTAAGTATTCGGTAAGTAAGAAAAATTATCAGGGTAAATC
ATGAATAATTTCAAAGTGTCCGTTGGATGATTTTGTGATCACAATGGTCA
TATAAATTCAAACAGTCTATGCTTAAACTCCCATATCAAGATTACGTGGA
CTTTGGAGTGccggccgattttactttcattttcagtggtttcacttttg
atttcaagccaacatcttagcaacagggtgcttgcccatagttacagggg
tttgagcaaaaaacaaacatagaaagtttCCCAAATCCTCTATTTTgatt
gaaccaataaaaaatgaaactcttccatgtttcacttttttgcaccaatt
cttcaaaaatgaaaatatttaagattttaaagttcttcttttatctaatg
attttttatggcactttatttgttgacaatctaaactctcgcatcaaatt
cccgctttcttcagtaaattgaagatgagaaaaaagctaagccttaggat
cacgGATTTAGtgaggccacgggtgccaaaaagaagggccatgTGAAATg
cggcaatctcattggtggaaattttatAAACAGTTTCGAAGGAGCCTGGA
AGCAATCAGTAAGAAGAGACccctttcgtttttgttgcagatatCGGATA
CAGGTGTATGTACCGCAAAATACATGTGTTTTTCACAATGTCTGTAATCA
TCAAAGAATTtcattgaacaaaaaaaaattttctcagaattttaaaattt
aggcGGAGTTAAATTTATATATGGTAACACCTGGATTgtttataatttaa
aaatatgattCATCTCagcaaatttagaaaaaaaaaattaaggctGTAag
taattttcttcaaaaaaaacagcgaaaactaaaaaaatgtatTCTGTCTG
CTGCGGTACTGTTGTATTCTGCGGTACATATACACCTAatcgataaattc
gattatAGAAGTAATCGAACAACCACTTATTGATTAACAATCAAATATTG
AGTACCAAAATTTCAAAAAAATTGCGAGTATTTTCGATCACTTTCTTAAC
AACCCTTCCAAGTCTCGATAACCGTTCGAGTACTTTGATTGTTATTGATT
ACTTTCGAAAACCAATTGATTACTTCGATAACCAATTAATCATATATCTT
TAAGAAAAACCAAAAAAACTGACCTAAAACCAAAGCACAAAAAGAAGCCC
GGCCATAAAGATTGACCCCCTTATTTTTTACGTGCCATTTTGTGTGCCTT
CCGCATTCTGATTGGTCAGAGAAAACGAAAGTGGTTTTCGCACGTGAATC
CCGTGTTTTAATTGGCTGAAGTAAACTTGGTTTCAGATTATTGTGACGCG
CTGCTACTGGAAACATATTTGATAAAATCGAAGGCTGGAAAGTACTCAAT
ACAATGGAAGGTATTCAATATCAATATGATCGAAAGTAATCAAAAACTCA
GTCGAGGATTATACCCTAAATAAGAGAATACCCAAGTTAGAGGATTAcct
tatttaggagattttcagtCTCTTATTTAAGAGAACGTTACCTAAACTAG
GAGAATTCTGTACGTTTCACCAATTTACTTCAGAGCAGAATATTTGCGCA
CTGAAAATAAGATCACGTGAAAGATCACGTTTTTGTGATTCCGAtgaccc
aaaaaccaaaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059634-exon-scaffold_329-1491911889:580298..582010 | TCONS_00059634-exon-scaffold_329-1491911889:580298..582010 | Clytia hemisphaerica | exon |
| TCONS_00059634-exon-scaffold_329-1510915933:580298..582010 | TCONS_00059634-exon-scaffold_329-1510915933:580298..582010 | Clytia hemisphaerica | exon |
| TCONS_00059634-exon-scaffold_329-1575043694:580298..582010 | TCONS_00059634-exon-scaffold_329-1575043694:580298..582010 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:580298..582010 . |
Blast
The following BLAST results are available for this feature:
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