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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059624 ID=TCONS_00059624|Name=TCONS_00059624|organism=Clytia hemisphaerica|type=transcript|length=1388bp
gttTCAAATGTATTGCATTATTTTcccttttgtatttttcagatGAATTC
ACCTTATGGTCAGGTAGCATGGTGGGGATTTTCCCCATCATTagatataa
taaaacatatgaAAACACACGAAGTCAATCAAAGTAAAGAAATGAATGTC
TTATTGGTAGGATCTGCAGACAATCGACACATACTTCACACCTTGTCAAA
TTGTCATGACTTTGAtgggaaaatcaatttttatttggTTGAATCAAATC
TGGAGAATATGGCGCGTCAAATGTTATTGACTAACCTAGCTTTTGAGCTA
CCTTCTAAACTCAATATccaagaaaaaagtgaaatttattTAGAGCTATT
TGGTAATTCCCTATTACGCCATGATACTGAGGATTATTTGGTTGAACGCT
CAAATGAATATGTAAAGATGATAACAGAGCCTTCATATTCTGAAAAGACA
TATCCTTATTTCGATTTTTCCAATTTGAAATTCAAGGAGGTTGACCAGTT
GGAAAGTATTTTTAAATTCTGGAGAAATACCAACAAGGATGTCTTTGATA
TTGGTCAGAGTTGGGATAACCGTGTCAGAGCACACCTTGGAGTCCGCTAT
GATGCAAAGGACAATGCCTTTGATTGGGAATATAGTATGAGTTTAAAAGA
AAAGGCTTCTATTGTGAATTGGAACGAATATAAACAGTGGAGAGGTAATG
GTGTTGCTTTTCAGTTTCGTGATGAAACTGCTTATGTTTACCCTAACAAG
TCACTTGCTTCTGGATTGATTTTCAAGAAGGATGGGGAGCGCATACCTAA
ACGTGGCTATTGGGGTGATATTTTGAATAGCCCCTATGTGGCTTTTGGTG
TTGAATCTCAGAATGAATCTTTATTCAAAAAAGCTAACAATGTACACACA
CAGACAGCCACAGATGTTTCTATTTataatttgaaatcttttatgaGTCG
TGTTTTAACTGGTAGAAATgtggaaaacgaaagtgaaagtgacgGTGTTA
TCATTGAAGAAGTCTCGGAAAATGAAGTTGAAGATGAAATGCTGAGTATT
GTCAAAGAGaaattcaaattgatttttcttcCACTGGATTGCGTTGGTTC
GCTTCATAAGAAAAGTAAATTCAAGCGACGTTTCGATATGGTGTTTTTCT
CTAACAGTATGGTTCATTGCCTTGATTATTCAATTAGTAGTTTATTCCAT
GACAAGGAATCAATATTAGTCATCGAGTCAACAAAATTTATGTTAGATTT
GAAAGTGGAAATGCATGAGGAATATGCTAAGAAAATTAAAGGAATGGCAA
GCACTTCTTGTTGCCAACCATGTAAACAATTTAAATGCCAACAAGATTCT
TATGCCGTCTTCAAATACCAAGGCGAATAGTTATTGNN Run BLAST on NCBI protein sequence of TCONS_00059624-protein >TCONS_00059624-protein ID=TCONS_00059624-protein|Name=TCONS_00059624-protein|organism=Clytia hemisphaerica|type=polypeptide|length=459bp
VSNVLHYFPFCIFQMNSPYGQVAWWGFSPSLDIIKHMKTHEVNQSKEMNV
LLVGSADNRHILHTLSNCHDFDGKINFYLVESNLENMARQMLLTNLAFEL
PSKLNIQEKSEIYLELFGNSLLRHDTEDYLVERSNEYVKMITEPSYSEKT
YPYFDFSNLKFKEVDQLESIFKFWRNTNKDVFDIGQSWDNRVRAHLGVRY
DAKDNAFDWEYSMSLKEKASIVNWNEYKQWRGNGVAFQFRDETAYVYPNK
SLASGLIFKKDGERIPKRGYWGDILNSPYVAFGVESQNESLFKKANNVHT
QTATDVSIYNLKSFMSRVLTGRNVENESESDGVIIEEVSENEVEDEMLSI
VKEKFKLIFLPLDCVGSLHKKSKFKRRFDMVFFSNSMVHCLDYSISSLFH
DKESILVIESTKFMLDLKVEMHEEYAKKIKGMASTSCCQPCKQFKCQQDS
YAVFKYQGE Run BLAST on NCBI transcript from alignment at scaffold_329:54854..56241 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059624 ID=TCONS_00059624|Name=TCONS_00059624|organism=Clytia hemisphaerica|type=transcript|length=1388bp|location=Sequence derived from alignment at scaffold_329:54854..56241 (Clytia hemisphaerica)
NNCAATAACTATTCGCCTTGGTATTTGAAGACGGCATAAGAATCTTGTTG
GCATTTAAATTGTTTACATGGTTGGCAACAAGAAGTGCTTGCCATTCCTT
TAATTTTCTTAGCATATTCCTCATGCATTTCCACTTTCAAATCTAACATA
AATTTTGTTGACTCGATGACTAATATTGATTCCTTGTCATGGAATAAACT
ACTAATTGAATAATCAAGGCAATGAACCATACTGTTAGAGAAAAACACCA
TATCGAAACGTCGCTTGAATTTACTTTTCTTATGAAGCGAACCAACGCAA
TCCAGTGgaagaaaaatcaatttgaatttCTCTTTGACAATACTCAGCAT
TTCATCTTCAACTTCATTTTCCGAGACTTCTTCAATGATAACACcgtcac
tttcactttcgttttccacATTTCTACCAGTTAAAACACGACtcataaaa
gatttcaaattatAAATAGAAACATCTGTGGCTGTCTGTGTGTGTACATT
GTTAGCTTTTTTGAATAAAGATTCATTCTGAGATTCAACACCAAAAGCCA
CATAGGGGCTATTCAAAATATCACCCCAATAGCCACGTTTAGGTATGCGC
TCCCCATCCTTCTTGAAAATCAATCCAGAAGCAAGTGACTTGTTAGGGTA
AACATAAGCAGTTTCATCACGAAACTGAAAAGCAACACCATTACCTCTCC
ACTGTTTATATTCGTTCCAATTCACAATAGAAGCCTTTTCTTTTAAACTC
ATACTATATTCCCAATCAAAGGCATTGTCCTTTGCATCATAGCGGACTCC
AAGGTGTGCTCTGACACGGTTATCCCAACTCTGACCAATATCAAAGACAT
CCTTGTTGGTATTTCTCCAGAATTTAAAAATACTTTCCAACTGGTCAACC
TCCTTGAATTTCAAATTGGAAAAATCGAAATAAGGATATGTCTTTTCAGA
ATATGAAGGCTCTGTTATCATCTTTACATATTCATTTGAGCGTTCAACCA
AATAATCCTCAGTATCATGGCGTAATAGGGAATTACCAAATAGCTCTAaa
taaatttcacttttttcttggATATTGAGTTTAGAAGGTAGCTCAAAAGC
TAGGTTAGTCAATAACATTTGACGCGCCATATTCTCCAGATTTGATTCAA
ccaaataaaaattgattttcccaTCAAAGTCATGACAATTTGACAAGGTG
TGAAGTATGTGTCGATTGTCTGCAGATCCTACCAATAAGACATTCATTTC
TTTACTTTGATTGACTTCGTGTGTTTtcatatgttttattatatctAATG
ATGGGGAAAATCCCCACCATGCTACCTGACCATAAGGTGAATTCatctga
aaaatacaaaagggAAAATAATGCAATACATTTGAaac Coding sequence (CDS) from alignment at scaffold_329:54854..56241 >TCONS_00059624 ID=TCONS_00059624|Name=TCONS_00059624|organism=Clytia hemisphaerica|type=CDS|length=1380bp|location=Sequence derived from alignment at scaffold_329:54854..56241 (Clytia hemisphaerica)
CTATTCGCCTTGGTATTTGAAGACGGCATAAGAATCTTGTTGGCATTTAA
ATTGTTTACATGGTTGGCAACAAGAAGTGCTTGCCATTCCTTTAATTTTC
TTAGCATATTCCTCATGCATTTCCACTTTCAAATCTAACATAAATTTTGT
TGACTCGATGACTAATATTGATTCCTTGTCATGGAATAAACTACTAATTG
AATAATCAAGGCAATGAACCATACTGTTAGAGAAAAACACCATATCGAAA
CGTCGCTTGAATTTACTTTTCTTATGAAGCGAACCAACGCAATCCAGTGg
aagaaaaatcaatttgaatttCTCTTTGACAATACTCAGCATTTCATCTT
CAACTTCATTTTCCGAGACTTCTTCAATGATAACACcgtcactttcactt
tcgttttccacATTTCTACCAGTTAAAACACGACtcataaaagatttcaa
attatAAATAGAAACATCTGTGGCTGTCTGTGTGTGTACATTGTTAGCTT
TTTTGAATAAAGATTCATTCTGAGATTCAACACCAAAAGCCACATAGGGG
CTATTCAAAATATCACCCCAATAGCCACGTTTAGGTATGCGCTCCCCATC
CTTCTTGAAAATCAATCCAGAAGCAAGTGACTTGTTAGGGTAAACATAAG
CAGTTTCATCACGAAACTGAAAAGCAACACCATTACCTCTCCACTGTTTA
TATTCGTTCCAATTCACAATAGAAGCCTTTTCTTTTAAACTCATACTATA
TTCCCAATCAAAGGCATTGTCCTTTGCATCATAGCGGACTCCAAGGTGTG
CTCTGACACGGTTATCCCAACTCTGACCAATATCAAAGACATCCTTGTTG
GTATTTCTCCAGAATTTAAAAATACTTTCCAACTGGTCAACCTCCTTGAA
TTTCAAATTGGAAAAATCGAAATAAGGATATGTCTTTTCAGAATATGAAG
GCTCTGTTATCATCTTTACATATTCATTTGAGCGTTCAACCAAATAATCC
TCAGTATCATGGCGTAATAGGGAATTACCAAATAGCTCTAaataaatttc
acttttttcttggATATTGAGTTTAGAAGGTAGCTCAAAAGCTAGGTTAG
TCAATAACATTTGACGCGCCATATTCTCCAGATTTGATTCAAccaaataa
aaattgattttcccaTCAAAGTCATGACAATTTGACAAGGTGTGAAGTAT
GTGTCGATTGTCTGCAGATCCTACCAATAAGACATTCATTTCTTTACTTT
GATTGACTTCGTGTGTTTtcatatgttttattatatctAATGATGGGGAA
AATCCCCACCATGCTACCTGACCATAAGGTGAATTCatctgaaaaataca
aaagggAAAATAATGCAATACATTTGAaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059624-exon-scaffold_329-1491911889:54854..56241 | TCONS_00059624-exon-scaffold_329-1491911889:54854..56241 | Clytia hemisphaerica | exon |
| TCONS_00059624-exon-scaffold_329-1510915933:54854..56241 | TCONS_00059624-exon-scaffold_329-1510915933:54854..56241 | Clytia hemisphaerica | exon |
| TCONS_00059624-exon-scaffold_329-1575043694:54854..56241 | TCONS_00059624-exon-scaffold_329-1575043694:54854..56241 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:54854..56241 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00059624 vs. Swiss-Prot (Human)
Match: DAAF3 (Dynein assembly factor 3, axonemal OS=Homo sapiens GN=DNAAF3 PE=1 SV=3) HSP 1 Score: 296.59 bits (758), Expect = 1.862e-93 Identity = 145/431 (33.64%), Postives = 248/431 (57.54%), Query Frame = 1
Query: 70 WWGFSPSLDIIKHM-------KTHEVNQSKEMNVLLVGSADNRHILHTLSNCHDFDGK-INFYLVESNLENMARQMLLTNLAFELPSKLNIQEKSEIYLELFGNSLLRHDTEDYLVERSNEYVKMITEPSYSEKTYPYFDFSNLKFKEVDQLESIFKFWRNTNK--DVFDIGQSWDNRVRAHLGVRYDAKDNAFDWEYSMSLKEK-ASIVNWNEYKQWRGNGVAFQFRDETAYVYPNKSLASGLIFKKDGERIPKRGYWGDILNSPYVAFGVESQNESLFKKANNVHTQTATDVSIYNLKSFMSRV-------LTGRNVENESESDGXXXXXXXXXXXXXXMLSIVKEKFKLIFLPLDCVGSLHKKSKFKRRFDMVFFSNSMVHCLDYSISSLFHDKESILVIESTKFMLDLKVEMHEEYAKKIKGMASTS 1308
WWG SP+LD+ + V+ + E++VLL+GS D RH+L TLS + + NF+++E+NLE +AR ML+ +LA E P K+ +QE+SE +LE++GN+LLR ++ +++ ++ EP E+ P+ LKF+E D LE++F+FW K F + + WD+R+R +LG RYDA+ DW+ M L ++ A +++ E+++WR GVAF+ RD +AY PN++LASG + GER+ RGYWGDI P+VAFG+E+ +ESL + +N +TA +++ +N+ + V TG ++E + ++G + E F + FLPLD +LH KS + RF +++ + MVH L + + + L++E ++++D++ E + + +++ +A +
Sbjct: 16 WWGLSPALDLQAESPPVDPDSQADTVHSNPELDVLLLGSVDGRHLLRTLSRAKFWPRRRFNFFVLENNLEAVARHMLIFSLALEEPEKMGLQERSETFLEVWGNALLRPPVAAFVRAQADLLAHLVPEPDRLEEQLPWLSLRALKFRERDALEAVFRFWAGGEKGPQAFPMSRLWDSRLRHYLGSRYDARRGVSDWDLRMKLHDRGAQVIHPQEFRRWRDTGVAFELRDSSAYHVPNRTLASGRLLSYRGERVAARGYWGDIATGPFVAFGIEADDESLLRTSNGQPVKTAGEITQHNVTELLRDVAAWGRARATGGDLEEQQHAEGSPEPGTPA--------APTPESFTVHFLPLDSAQTLHHKSCYNGRFQLLYVACGMVHLLIPELGACVAPGGN-LIVELARYLVDVRQEQLQGFNTRVRELAQAA 437
The following BLAST results are available for this feature:
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