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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059623 ID=TCONS_00059623|Name=TCONS_00059623|organism=Clytia hemisphaerica|type=transcript|length=1698bp
cgcatctgttaaaactggtatctttcgctggaaattctctcaaaaatgct
gacgtcagcataaaatattgcatttttgaagacgtatcagccAATTCCGG
GAGACTAAGTCCgccaaatgagacaaatgaccccattttggagatctact
cttcaagctctatctgatggcacaatcagttttagctaaattaGAACTtc
gaaaatcgactttctaaggacccccaggctaaaatgaccctacctccttc
aagcccccataaagaattttccccagctttgccagcttggcaaaaactgg
ttttggggtcccaagggaccatataatgagaaaataaaataaaaacccat
atttactacttgtaaNCTTCTGGATTGATTTTCAAGAAGGATGGGGAGCG
CATACCTAAACGTGGCTATTGGGGTGATATTTTGAATAGCCCCTATGTGG
CTTTTGGTGTTGAATCTCAGAATGAATCTCTATTCAAAAAAGCTAACAAT
GTGCACACACAGACAGCCACAGATGTTTCTATTTataatttgaaatcttt
tatgaGTCGTGTTTTAACTGGTAAAAATgtggaaaacgaaagtgaaagtg
acgGTGTTATCATTGAAGAAGTCTCGGAAAATGAAGTTGAAGATGAAATG
CTGAGTATTGTCAAAGAGaaattcaaattgatttttcttcCACTGGATTG
CGTTGGTTCGCTTCATAAGAAAAGTAAATTCAAGCGACGTTTCGATATGG
TGTTTTTCTCTAACAGTATGGTTCATTGCCTTGATTATTCAATTAGTAGT
TTATTCCATGACAAGGAATCAATATTAGTCATCGAGTCAACAAAATTTAT
GTTAGATTTGAAAGTGGAAATGCATGAGGAATATGCTAAGAAAATTAAAG
GAATGGCAAGCACTTCTTGTTGCCAACCATGTAAACAATTTAAATGCCAA
CAAGATTCTTATGCCGTCTTCAAATACCAAGGCGAATAGTTATTGTAGCG
AACGTTTTCTAAACAGATTGGTTTATTGAACATTTTAATATATAtagaat
gaaaaaatgaaatataccGTATATATCAAGCTCcgattcgaaagttttgt
atttgagcCTCTTTTGGTTACAAAAGATGAAACAAAGTGCTTATTCTTTA
ATATCAGACTGGATggacaaaataaattttccatgTTTAATATTCTTGAA
TTAATGTCTCCCTTCTTGGATATAGTTTTGAGTGTGTTAACgtttcaatg
aaatttacaTGGGTTAGTTCTTTTGAACAACTTATGAATAGCTTTTAAAG
ATATGGCTAAATAAATTTGGCTTGAACCTAGAGAAACTCCTTAGAGCCAT
TTTCTCCTCAAAAAATACTAAGTAAATGAGACAGTTCTTACTTTTACCTA
GTTTGAATTATTTTAGTGAAGGCACAAAAGAATACAGCCATAGCTGAGCC
CAAATTTACAGGCTCCTTtattaaaaaagatatatttattgtatttttaa
acCATTATGGGAAGACTTCAGGGTGTGATTTCATTAATTACTTAGCGtat
gttctgtaaatatttttgtatgGTGGGTTCTGTAAATTATATATGTATTa
tgagttttttttaattagaatttCGTTAAAAGTATACGTTAAAAAGGATA
ATATATAAATTATTCAAAGATTGAAGATAGACTGACTATAAATTGATG Run BLAST on NCBI protein sequence of TCONS_00059623-protein >TCONS_00059623-protein ID=TCONS_00059623-protein|Name=TCONS_00059623-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
MSRVLTGKNVENESESDGVIIEEVSENEVEDEMLSIVKEKFKLIFLPLDC
VGSLHKKSKFKRRFDMVFFSNSMVHCLDYSISSLFHDKESILVIESTKFM
LDLKVEMHEEYAKKIKGMASTSCCQPCKQFKCQQDSYAVFKYQGE Run BLAST on NCBI transcript from alignment at scaffold_329:52161..53858 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059623 ID=TCONS_00059623|Name=TCONS_00059623|organism=Clytia hemisphaerica|type=transcript|length=1698bp|location=Sequence derived from alignment at scaffold_329:52161..53858 (Clytia hemisphaerica)
CATCAATTTATAGTCAGTCTATCTTCAATCTTTGAATAATTTATATATTA
TCCTTTTTAACGTATACTTTTAACGaaattctaattaaaaaaaactcatA
ATACATATATAATTTACAGAACCCACcatacaaaaatatttacagaacat
aCGCTAAGTAATTAATGAAATCACACCCTGAAGTCTTCCCATAATGgttt
aaaaatacaataaatatatcttttttaataAAGGAGCCTGTAAATTTGGG
CTCAGCTATGGCTGTATTCTTTTGTGCCTTCACTAAAATAATTCAAACTA
GGTAAAAGTAAGAACTGTCTCATTTACTTAGTATTTTTTGAGGAGAAAAT
GGCTCTAAGGAGTTTCTCTAGGTTCAAGCCAAATTTATTTAGCCATATCT
TTAAAAGCTATTCATAAGTTGTTCAAAAGAACTAACCCAtgtaaatttca
ttgaaacGTTAACACACTCAAAACTATATCCAAGAAGGGAGACATTAATT
CAAGAATATTAAAcatggaaaatttattttgtccATCCAGTCTGATATTA
AAGAATAAGCACTTTGTTTCATCTTTTGTAACCAAAAGAGgctcaaatac
aaaactttcgaatcgGAGCTTGATATATACggtatatttcattttttcat
tctaTATATATTAAAATGTTCAATAAACCAATCTGTTTAGAAAACGTTCG
CTACAATAACTATTCGCCTTGGTATTTGAAGACGGCATAAGAATCTTGTT
GGCATTTAAATTGTTTACATGGTTGGCAACAAGAAGTGCTTGCCATTCCT
TTAATTTTCTTAGCATATTCCTCATGCATTTCCACTTTCAAATCTAACAT
AAATTTTGTTGACTCGATGACTAATATTGATTCCTTGTCATGGAATAAAC
TACTAATTGAATAATCAAGGCAATGAACCATACTGTTAGAGAAAAACACC
ATATCGAAACGTCGCTTGAATTTACTTTTCTTATGAAGCGAACCAACGCA
ATCCAGTGgaagaaaaatcaatttgaatttCTCTTTGACAATACTCAGCA
TTTCATCTTCAACTTCATTTTCCGAGACTTCTTCAATGATAACACcgtca
ctttcactttcgttttccacATTTTTACCAGTTAAAACACGACtcataaa
agatttcaaattatAAATAGAAACATCTGTGGCTGTCTGTGTGTGCACAT
TGTTAGCTTTTTTGAATAGAGATTCATTCTGAGATTCAACACCAAAAGCC
ACATAGGGGCTATTCAAAATATCACCCCAATAGCCACGTTTAGGTATGCG
CTCCCCATCCTTCTTGAAAATCAATCCAGAAGNttacaagtagtaaatat
gggtttttattttattttctcattatatggtcccttgggaccccaaaacc
agtttttgccaagctggcaaagctggggaaaattctttatgggggcttga
aggaggtagggtcattttagcctgggggtccttagaaagtcgattttcga
AGTTCtaatttagctaaaactgattgtgccatcagatagagcttgaagag
tagatctccaaaatggggtcatttgtctcatttggcGGACTTAGTCTCCC
GGAATTggctgatacgtcttcaaaaatgcaatattttatgctgacgtcag
catttttgagagaatttccagcgaaagataccagttttaacagatgcg Coding sequence (CDS) from alignment at scaffold_329:52161..53858 >TCONS_00059623 ID=TCONS_00059623|Name=TCONS_00059623|organism=Clytia hemisphaerica|type=CDS|length=438bp|location=Sequence derived from alignment at scaffold_329:52161..53858 (Clytia hemisphaerica)
CTATTCGCCTTGGTATTTGAAGACGGCATAAGAATCTTGTTGGCATTTAA
ATTGTTTACATGGTTGGCAACAAGAAGTGCTTGCCATTCCTTTAATTTTC
TTAGCATATTCCTCATGCATTTCCACTTTCAAATCTAACATAAATTTTGT
TGACTCGATGACTAATATTGATTCCTTGTCATGGAATAAACTACTAATTG
AATAATCAAGGCAATGAACCATACTGTTAGAGAAAAACACCATATCGAAA
CGTCGCTTGAATTTACTTTTCTTATGAAGCGAACCAACGCAATCCAGTGg
aagaaaaatcaatttgaatttCTCTTTGACAATACTCAGCATTTCATCTT
CAACTTCATTTTCCGAGACTTCTTCAATGATAACACcgtcactttcactt
tcgttttccacATTTTTACCAGTTAAAACACGACtcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059623-exon-scaffold_329-1491911889:52161..53858 | TCONS_00059623-exon-scaffold_329-1491911889:52161..53858 | Clytia hemisphaerica | exon |
| TCONS_00059623-exon-scaffold_329-1510915933:52161..53858 | TCONS_00059623-exon-scaffold_329-1510915933:52161..53858 | Clytia hemisphaerica | exon |
| TCONS_00059623-exon-scaffold_329-1575043694:52161..53858 | TCONS_00059623-exon-scaffold_329-1575043694:52161..53858 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:52161..53858 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR028235 | DNAAF3_C |
Blast
BLAST of TCONS_00059623 vs. Swiss-Prot (Human)
Match: DAAF3 (Dynein assembly factor 3, axonemal OS=Homo sapiens GN=DNAAF3 PE=1 SV=3) HSP 1 Score: 104.375 bits (259), Expect = 1.537e-23 Identity = 52/190 (27.37%), Postives = 98/190 (51.58%), Query Frame = 3
Query: 369 SGLIFKKDGERIPKRGYWGDILNSPYVAFGVESQNESLFKKANNVHTQTATDVSIYNLKSFMSRV-------LTGKNVENESESDGXXXXXXXXXXXXXXMLSIVKEKFKLIFLPLDCVGSLHKKSKFKRRFDMVFFSNSMVHCLDYSISSLFHDKESILVIESTKFMLDLKVEMHEEYAKKIKGMASTS 917
SG + GER+ RGYWGDI P+VAFG+E+ +ESL + +N +TA +++ +N+ + V TG ++E + ++G + E F + FLPLD +LH KS + RF +++ + MVH L + + + L++E ++++D++ E + + +++ +A +
Sbjct: 257 SGRLLSYRGERVAARGYWGDIATGPFVAFGIEADDESLLRTSNGQPVKTAGEITQHNVTELLRDVAAWGRARATGGDLEEQQHAEGSPEPGTPA--------APTPESFTVHFLPLDSAQTLHHKSCYNGRFQLLYVACGMVHLLIPELGACVAPGGN-LIVELARYLVDVRQEQLQGFNTRVRELAQAA 437
The following BLAST results are available for this feature:
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