TCONS_00059621 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059621
Unique NameTCONS_00059621
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2518

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059621 ID=TCONS_00059621|Name=TCONS_00059621|organism=Clytia hemisphaerica|type=transcript|length=2518bp
CCCcctttagtgcgtacgtactatgtggacgccTCCCTTGATGAACCTGG
TAGACTTCTACTTAACAACTAGTAAGAAATCGGCAAGTGCAAACCAATTT
GTTGGCCTCAAATCCGTAATCACTTCATAAAAATCATTCTGAGATCAAAA
TATAAAACTAGGTGTGTTTACAAATATTATAGTGTACTGCACATAAAACG
TTACCCATGATGTAACAAACAGAATAACATTTCTCAAGAATAAACACTTA
CGTGTATTTTATAAGTGTCTGCTTCTATATCaggcattatgcttagcatt
ctattgttctcaaacaatagagccattgttaaggtaccaaaaactgagcc
ttcatatgcttataaatgttttgcttataaaagaaaaaaacatgtaattc
cctaactaaaaattaaacaatACCTTTTCTGAGCCATTAGCTTGAAGGTC
TTCAACTGTGTAAGCTTCCCGTAAATCTTTCAAGCGATGCACCATTTTAT
GACGGAATTCTAAACCGATAACATTTGGTAGCAGGTTGCACAACAAATCA
ATGTGTACCCGATTATGGTCCAAGCTTGTCTGTGATTGCTGACCTATAGG
TTCCACTGAAGGAGTTAGCAGTTCATTTGCTGGACAGTGTTGACTAAGGG
GCGAGTTTTCTTCACTGTATAATGGCATTGAAATGTCTGCCAAATATTGT
TTTTGGGATGTCTCATCATTACGTGGGGTATACTTAAAATTCTCAGCAGG
TCAGCGTTGTTGACTAAAGGAAATGTCATCACCAGTGGTTGAAATATCAA
TATCATCTGCAAACCCTTGTTTTATAGTGGTGCTGAGGTAGTTGTGATTA
ATTGGATTATCACTAGTACAAGAGCGTTCTTGTCTAGAAATTTTCAATTC
GCGTTCATCTTCCTTTAAACCTCTTTTAGAATTCGCATTGATCTGAGTCA
ATGATGGATTTAAAGACAACTGTGAAATGACATCTTCAAGTGATCTCCTT
GCAATTGTGATTGATGTTTCTAAAATATGTTTTGATTGTGTTATCGCTTA
TTCGAATTGTTTTGTAGCATCTGAAAGATATTGTTCAAACTTTTTCTTCC
TGAGGTTAATTGAAACGCCCAATAAATTTCTGGTATTACGAATTGCTTCT
TCAAGTGTGCTTTCTCggttcatatcggttgcactTTAGTTATCTTTTAT
ATTTCCCTTTCtgtatatttttcttcttttattatTGTCTAGAGGGAACa
gaataaaataatgaaaaaaagacTAGCTCCTNATCCTGATCTTTAAATGA
TTTAAATGGTTTTGTAATCATCTGGTCCATGTGATTTtagagaaatatca
aaattcgaATATTCACCCGTAGAAGACCAGTAaatatcttcaattttcat
ctcAAGCATGATGTTACGAAATTCTGGAACGTTTTTCTTTGTCAAATCTA
AAGCTTCCAACTCCAAAAACATTACTActggtaaaattttgaaaagttca
aaatcCGCAAGGGAAAGTTTATAATCTGAATGATTACTTTTTATTAAGTC
TAAATGGGTCAGGGTTTTGATTTCAGATAATAATTTAACAATCTCAGCAA
TTTTACCAGCTTCCCAACGAATCTGTGTTGTAGAAAGCGTAATTAGCGGT
AAACCAATAAATAACTGAATAGGTATTGGATCTTGGCAGTAAGCATGACG
AATGCTAAACTCTTCCaaagattgaaattttgaaagtacaGGAGCAAACT
TTGTAAGGCCATCACTCGACAAACCATATTCAAGGGCAACACAATCAATC
TTGAAAACTTTTATGTTATTCGATGCAAGTTTATCCAAATCTTCAACAGT
TAAAATATATTGGTTATTGAACGTTTCAGAAATATTGACACGTGTTCCTT
TAAGTTTACACAAAACTTTAACAAGCTCATCAAAATCAGTGATCGATAAA
GAACTCGACAAAATTTCCtcaatgaaaactttttcactGACCATTTCAAG
TTGTTTAGGTGACCAAGCACAGTTTCTTCTTTCATCGCTACTAAACTTGG
GATTGATTATCAACTTTCGTATCGAACAAGCACCGCCGAGAATTCCgttc
aaaaacaaatcaaagtcGTCTCTGTATTTCATATTAAGGGCATTTGTGTG
CAGAACAATTGGTGGTTTTGCAATTTCACAAATATCGTCTAATCTGTCTT
CAAAGGTTTCATCATTGTCGTTATAATCAATATGTAATAAGTCAAGTCCA
GAAACGATATCACAAATTTTGGACCAAAGACAATTAAAATCGTTTGTATG
CAACTCTTTAATCGGAAATTTCGTTATTTTTGTCAAGAAAGAATGATCTC
GTTTCCCATAAAATCTTGGTTTTGACCAAATTCGTTCAATAGTAAGATTA
TACATTCTTTTTGATGTTCGTGATAAAGCTTTTGCATCTTCCTTTTCCGA
GAACGCAATGATTATTTCTAGTATCTCATCTGGTAATAAATTGATATCCA
TTTGAGCTTGATTCTTTG
Run BLAST on NCBI

transcript from alignment at scaffold_329:822717..828809-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059621 ID=TCONS_00059621|Name=TCONS_00059621|organism=Clytia hemisphaerica|type=transcript|length=6093bp|location=Sequence derived from alignment at scaffold_329:822717..828809- (Clytia hemisphaerica)
CCCCCTTTAGTGCGTACGTACTATGTGGACGCCTCCCTTGATGAACCTGG
TAGACTTCTACTTAACAACTAGTAAGAAATCGGCAAGTGCAAACCAATTT
GTTGGCCTCAAATCCGTAATCACTTCATAAAAATCATTCTGAGATCAAAA
TATAAAACTAGGTGTGTTTACAAATATTATAGTGTACTGCACATAAAACG
TTACCCATGATGTAACAAACAGAATAACATTTCTCAAGAATAAACACTTA
CGTGTATTTTATAAGTGTCTGCTTCTATATCAGGCATTATGCTTAGCATT
CTATTGTTCTCAAACAATAGAGCCATTGTTAAGGTACCAAAAACTGAGCC
TTCATATGCTTATAAATGTTTTGCTTATAAAAGAAAAAAACATGTAATTC
CCTAACTAAAAATTAAACAATACCTTTTCTGAGCCATTAGCTTGAAGGTC
TTCAACTGTGTAAGCTTCCCGTAAATCTTTCAAGCGATGCACCATTTTAT
GACGGAATTCTAAACCGATAACATTTGGTAGCAGGTTGCACAACAAATCA
ATGTGTACCCGATTATGGTCCAAGCTTGTCTGTGATTGCTGACCTATAGG
TTCCACTGAAGGAGTTAGCAGTTCATTTGCTGGACAGTGTTGACTAAGGG
GCGAGTTTTCTTCACTGTATAATGGCATTGAAATGTCTGCCAAATATTGT
TTTTGGGATGTCTCATCATTACGTGGGGTATACTTAAAATTCTCAGCAGG
TCAGCGTTGTTGACTAAAGGAAATGTCATCACCAGTGGTTGAAATATCAA
TATCATCTGCAAACCCTTGTTTTATAGTGGTGCTGAGGTAGTTGTGATTA
ATTGGATTATCACTAGTACAAGAGCGTTCTTGTCTAGAAATTTTCAATTC
GCGTTCATCTTCCTTTAAACCTCTTTTAGAATTCGCATTGATCTGAGTCA
ATGATGGATTTAAAGACAACTGTGAAATGACATCTTCAAGTGATCTCCTT
GCAATTGTGATTGATGTTTCTAAAATATGTTTTGATTGTGTTATCGCTTA
TTCGAATTGTTTTGTAGCATCTGAAAGATATTGTTCAAACTTTTTCTTCC
TGAGGTTAATTGAAACGCCCAATAAATTTCTGGTATTACGAATTGCTTCT
TCAAGTGTGCTTTCTCGGTTCATATCGGTTGCACTTTAGTTATCTTTTAT
ATTTCCCTTTCTGTATATTTTTCTTCTTTTATTATTGTCTAGAGGGAACA
GAATAAAATAATGAAAAAAAGACTAGCTCCTNATCCTGATCTTTAAATGA
TTTAAATGGTTTTGTAATCATCTGGTCCATGTGATTTTAGAGAAATATCA
AAATTCGAATATTCACCCGTAGAAGACCAGTAAATATCTTCAATTTTCAT
CTCAAGCATGATGTTACGAAATTCTGGAACGTTTTTCTTTGTCAAATCTA
AAGCTTCCAACTCCAAAAACATTACTACTGGTAAAATTTTGAAAAGTTCA
AAATCCGCAAGGGAAAGTTTATAATCTGAATGATTACTTTTTATTAAGTC
TAAATGGGTCAGGGTTTTGATTTCAGATAATAATTTAACAATCTCAGCAA
TTTTACCAGCTTCCCAACGAATCTGTGTTGTAGAAAGCGTAATTAGCGGT
AAACCAATAAATAACTGAATAGGTATTGGATCTTGGCAGTAAGCATGACG
AATGCTAAACTCTTCCAAAGATTGAAATTTTGAAAGTACAGGAGCAAACT
TTGTAAGGCCATCACTCGACAAACCATATTCAAGGGCAACACAATCAATC
TTGAAAACTTTTATGTTATTCGATGCAAGTTTATCCAAATCTTCAACAGT
TAAAATATATTGGTTATTGAACGTTTCAGAAATATTGACACGTGTTCCTT
TAAGTTTACACAAAACTTTAACAAGCTCATCAAAATCAGTGATCGATAAA
GAACTCGACAAAATTTCCTCAATGAAAACTTTTTCACTGACCATTTCAAG
TTGTTTAGGTGACCAAGCACAGTTTCTTCTTTCATCGCTACTAAACTTGG
GATTGATTATCAACTTTCGTATCGAACAAGCACCGCCGAGAATTCCGTTC
AAAAACAAATCAAAGTCGTCTCTGTATTTCATATTAAGGGCATTTGTGTG
CAGAACAATTGGTGGTTTTGCAATTTCACAAATATCGTCTAATCTGTCTT
CAAAGGTTTCATCATTGTCGTTATAATCAATATGTAATAAGTCAAGTCCA
GAAACGATATCACAAATTTTGGACCAAAGACAATTAAAATCGTTTGTATG
CAACTCTTTAATCGGAAATTTCGTTATTTTTGTCAAGAAAGAATGATCTC
GTTTCCCATAAAATCTTGGTTTTGACCAAATTCGTTCAATAGTAAGATTA
TACATTCTTTTTGATGTTTGTGATAAAGCTTTAGCATCTTCCTTTTCCGA
GAACGCAATGNAATTCGTTCAATAGTAAGATTATACATTCTTTTTGATGT
TCGTGATAAAGCTTTTGCATCTTCCTTTTCCGAGAACGCAATGATTATTT
CTAGTATCTCATCTGGTAATAAATTGATATCCATTTGAACTTGATTCTTT
GAACACAATTGGTCTTTTGTTTACGTAATTCTTTTGTTGTTGTTGTTTAT
CTAGTTAAGGAAAGAGAACAAGGTTTAGAATGTTTAAGATCCAAAGAATA
TCCCGAGATTTATGATGTTAGGACTTGAAAACCTTGAAAGACTGTTACTT
TAAAAGGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTTCTGTGGGTGTATGTCAGAGCTACACTAAAATAAATAA
ACAACATTTGGAACATTGAACTTTCCTTTATAAGTCTCAGAATCCATAAA
AAAAATCAAAACATTGACCAATAGCCAAAACGTGAATTTCAGGCGCCATC
TTGAAATTTGGTTCGGAGCAAGAAAGCCACGGTCGCAGTAGAATCGGTTT
TCTTTAGCCCACGCATCCAAAGACGGCCCGAGTAAATCGATAAATTCTAT
GCGAATGCCCGCGATTGAATCGTGAAAAGTACTCTGAAATTTCAGAGTGT
CGGCCATCAAAGAAAACCCGAGAACCTTCGCAGGTCTTCTTGCAGAACCA
TTCCCTTTAGAGCGCATGCGTGGAATGTGTGGAGCACGAAGAGCTGCTTG
GAGGTTATCTATATTTAAAGAAATTTAATAAAGAGTTGACACAATATCTA
TGTTTCAAACTCAGAGTTTCATGGTGCTCAGGCACCAATCATCAGTGAAA
TAAAATAAAAATTAAAGAAATAAAAACTTCTGTCCAACTATATTCACTCG
GAAGATTTGGGTGGCAGGTTTATGCATACCGTCCTTATCAGCATGGCATA
CTGTATCCTGATCTTTAAATGATTTAAATGGTTTTGTAATCATCTGGTCC
ATGTGATTTTAGAGAAATATCAAAATTCGAATATTCACCCGTAGAAGACC
AGTAAATATNCCCTTATAAGTATGGCATACTGTATCCTGATCTTTAAATG
ATTTAAATGGTTTTGTAATCATCTGGTCCATGTGATTTTAGAGAAATATC
AAAATTCGAATATTCACCCGTAGAAGACCAGTAAATATCTTCNNNNNNNN
NNNNNNNNNNNNNNNTCCTGATCTTTAAATGATTTAAATGGTTTTGTAAT
CATCTGGTCCATGTGATTTTAGAGAAATATCAAAATTCGAATATTCACCC
GTAGAAGACCAGTATATATCTTCAATTTTCATCTCAAGCATGATTTTACG
AAATTCTGGAACGTTTTCCTTTGTCAAATCTAAAGCATCCAAGTCCAAAC
ACATGACTATTGGTAAAATTTTGAAACGTTCAAAATCCGCAAGGGAAAGT
TTATAATCTGAATGATTATTTACCTCCAAGTCTAAATCAGTCAGGGTTTT
GATTTCAGATAATATTTTAACAATCTCAGCAATTTTACCAGCTTCCCAAC
AAATCTGTGCTGTAGAAAGCGTATAATTATCGGTAAATCGGTAAATAACT
GAATAGGTATTGGATCTTTGCAGTAAGCATGACGAATGTTAAAATCTTCC
AAAGATTGAAATTTTGAAATTACAGGAGCANNNNNNNNNNNNNNNNNNCA
AGGGCAACACAATCAATTTTGAAAACTTTTATGTTATTCGTTGCAAGTTT
ATCCAAATCTTCAACAGTTAAAAGATATTGGTTATTGAAGCTTGTTTTGG
AAATGTTGACACGTGTTCCTTTAAGTTTACACAAAACTTTAAGAAGCTCA
TCAAAATCAGTGATCGATAAACAACTCAACAAAAGTTCCTCAATGAAAAC
TTTTTCATTGACCATTTCAAGTTGTTTAGGTGACCAAGCACAGTTTCTTC
TTTCATCACTACTAAACTTGTGATTGATTATCAACTTTCGTATCGAACAA
GCACCGCCGAGAATTTCTTTCAAAAACAAATCAAAGTCGTCTCTGTATTT
CATATTAAGGGCATTTGTGTGCAGAACAATTGATGGTTTTGCAATTTCAC
AAATATCGTCTAATCTGTCTTTAAAGGTTGCATTATTGTTGTTATTATCA
ATATGTATTAACTCAAGCCCAGAAACGATATCACAAATATTAGACCAAAG
ACAATTAAACTCATTTGTATGCAATTCTTTAATAGGAAATTTCGTTATTT
TTGACAAGAAGGAATGATTTCGTTTCCCATAAAATCTTGGTTTTGACCAA
ATTCGTTCTATAGTAAGAATATACATTCTTTTTGATGTTCGTGATAAAGC
TTNAATTCGTTCAATAGTAAGATTATACATTCTTTTTGATGTTCGTGATA
AAGCTTTTGCATCTTCCTTTTCCGAGAACGCAATGATTATTTCTAGTATC
TCATCTGGTAATAAATTGATATCCATTTGAGCTTGATTCTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037501XLOC_037501Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059621-exon-scaffold_329-1575043694:826407..828809TCONS_00059621-exon-scaffold_329-1575043694:826407..828809Clytia hemisphaericaexon
TCONS_00059621-exon-scaffold_329-1575043694:822874..822885TCONS_00059621-exon-scaffold_329-1575043694:822874..822885Clytia hemisphaericaexon
TCONS_00059621-exon-scaffold_329-1575043694:822717..822819TCONS_00059621-exon-scaffold_329-1575043694:822717..822819Clytia hemisphaericaexon
TCONS_00059621-exon-scaffold_329-1510915933:826407..828809TCONS_00059621-exon-scaffold_329-1510915933:826407..828809Clytia hemisphaericaexon
TCONS_00059621-exon-scaffold_329-1510915933:822874..822885TCONS_00059621-exon-scaffold_329-1510915933:822874..822885Clytia hemisphaericaexon
TCONS_00059621-exon-scaffold_329-1510915933:822717..822819TCONS_00059621-exon-scaffold_329-1510915933:822717..822819Clytia hemisphaericaexon
TCONS_00059621-exon-scaffold_329-1491911889:826407..828809TCONS_00059621-exon-scaffold_329-1491911889:826407..828809Clytia hemisphaericaexon
TCONS_00059621-exon-scaffold_329-1491911889:822874..822885TCONS_00059621-exon-scaffold_329-1491911889:822874..822885Clytia hemisphaericaexon
TCONS_00059621-exon-scaffold_329-1491911889:822717..822819TCONS_00059621-exon-scaffold_329-1491911889:822717..822819Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_329supercontigscaffold_329:822717..828809 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.852858	0.531693	0.685886	1.39642	0.425488	0.233601	0.322445	0.128565	0.103608	0	0.539384	0.461541	0.0709091	0.0631698	0.204662	0.486608	0.677237	0.895609	0.18062	0	0.151341	0.27893	0.349438	0.217712	0.259315	0.494837	0.415983	0.183695	0.164717	0.351504
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032675L_dom-like
IPR001810F-box_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059621 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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