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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059617 ID=TCONS_00059617|Name=TCONS_00059617|organism=Clytia hemisphaerica|type=transcript|length=1021bp
AATCTTTTACATGTATGACTGTACGAAACCAAAATAGGAAACTTCTGTTT
ATGTTGGCTTGTTGTTGAAAAATGTCTTTGAATGCGGGCAAAAATGCAGC
TGCAGTTGAAGCAGTGAATAAGTTTGTCACAAACAACCAAAACATTGGGA
TAGGAAGTGGATCCACCATCGTGTTCGCTGTAAAGAGATTGGCTGAAAGA
GTTACTGCAGAAAATTTGCAAGTGAAATGTGTTCCAACATcatttcaagc
aaaacaattgaTAACAGAAAACAATTTGTTTTTGAGTGACCTTGAACAGA
CCCTAGAGCTGGACATTGCAATCGATGGAGCAGATGAAGTTGATATAGAG
GGAAATTGTATCAAGGGAGGTGGAGGTTGCTTAACCCAAGAAAAAATAGT
TGCATCATGTGCAAAAACTTTCATTGTCATTGCTGATTCTACAAAAAGTT
CTACTAAGCTTGGGGAAAAATGGAAGAAAGGGGTTCCAATTGAAGTATTA
CCTATGGCATACAGAGTTGTAATGTTAAAACTAGAACAATTAGGCTTGAA
ACCAATCTTAAGAATGGCAAAATCCAAAGCAGGACCACTTGTGACTGACA
ATGgaaattttattattgatttTGGATTCGATGAAATTTCAGATTGGAAA
TCGATGAATGATAAGATCATCAACATACCAGGTGTTGTAGAAACTGGACT
TTTCATTAAGATGCACAAATGTGCCATTTTTGGAAACCAGGATGGTTCCA
TAACTACTGTAAATCTATAGAATatatattttgagttttaaaatttgtat
cttttttattCAGACTTATTTTTTgctattatttatttttcttagaaaat
caaagaaaaaagttgtttaGTATAATGAGACCTTGTGTAGATTTGATAAA
TGTTTTAATGTTTacataagtaagtaagtaagtaagtaactatttattta
ccatttgaaCACTTAAAATACATGAGACGGtatccacaaaataaaaaagg
atgGAGACCGCCTTATAGCCT Run BLAST on NCBI protein sequence of TCONS_00059617-protein >TCONS_00059617-protein ID=TCONS_00059617-protein|Name=TCONS_00059617-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
MSLNAGKNAAAVEAVNKFVTNNQNIGIGSGSTIVFAVKRLAERVTAENLQ
VKCVPTSFQAKQLITENNLFLSDLEQTLELDIAIDGADEVDIEGNCIKGG
GGCLTQEKIVASCAKTFIVIADSTKSSTKLGEKWKKGVPIEVLPMAYRVV
MLKLEQLGLKPILRMAKSKAGPLVTDNGNFIIDFGFDEISDWKSMNDKII
NIPGVVETGLFIKMHKCAIFGNQDGSITTVNL Run BLAST on NCBI transcript from alignment at scaffold_329:734056..736328- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059617 ID=TCONS_00059617|Name=TCONS_00059617|organism=Clytia hemisphaerica|type=transcript|length=2273bp|location=Sequence derived from alignment at scaffold_329:734056..736328- (Clytia hemisphaerica)
AATCTTTTACATGTATGACTGTACGAAACCAAAATAGGAAACTTCTGTTT
ATGTTGGCTTGTTGTTGAAAAATGTCTTTGAATGCGGGCAAAAATGCAGC
TGCAGTTGAAGCAGTGAATAAGTTTGTCACAAACAACCAAAACATTGGGA
TAGGAAGTGGATCCACCATCGTGTTCGCTGTAAAGAGATTGGCTGAAAGA
GTTACTGCAGAAAATTTGCAAGTGAAATGTGTTCCAACATCATTTCAAGC
AAAACAATTGATAACAGAAAACAATTTGTTTTTGAGTGACCTTGAACAGA
CCCTAGAGGTATGAAGCTTTCCATTCTTTTGATCAGTTTGAACATATCAT
TCTTTCAAGAAAAATTTGAGCATTCCAATCAATTTTTCTTAAGATTTAGA
GCGTTATTAATCAAACAAGAAGCTTCAAACTGATATTGCATCAAAGCGCA
ATCATCAAACGTAAAGGTGTCCCAGCCCATCTGAAATCATCATGGTACAT
GGAATATAAAGTCCATTTTTATAAACAAGTTTTTATTTTATTGTTTTAAC
GGCTCACTTATCCCCCCATCAGATTTTTTAAAGGCAAAAGTAGTTGAGCT
CCAGCTTCTGGACTAGGGATGTCAATTCTTAATTGTTTTCAAGTCAGAAA
ATTCAGTGTGGATGGAAAATGTGTAATATTTTGCAGTGAAAAAAAAACAT
GTTCTAAAACATGCTCTTGAATACTTAAACCCAAGACACTCGAGATATTA
TTCAAACTTATCAGGTTCAATGTAATCATGCTTTGATTATTTTTAATATA
ATTTTGGATGGGACAAAGTTTTGCAGATTTTTAAATAAAATTTTTACATA
TTTCCAAAACAGGGGGGGGGGTCGGTACTAAAATCTCAGACATCATGACA
TTTAGTGACGTGGTGGTACTGCAAAAAAGCTCAAAAATAATTTCAGTACC
ATGTGTACTAAAATACCAAAAAGGGTGGTCCCTTTAAAAAGAAGTTTTTG
AAAAATCTTAGTATTTTGTTCTAAAATCAGCCAAAATGGAGCATTTTTTT
AACAATTGGAAAAAAATTGATTTTTTTCTTGAGGACTTTTCGAAAAAATC
TTCAGAAATCTTTCAGAATTTTTCCAATTTTTGAAATATTTTTTAAAAAT
ATTTTTATGTACAGTTCAGCACAGTTTAGTAAAAAAATTATATTATTTTG
CAGATTGATGCACTAAATTCAAATAATTTTGTAACAATGACCCCATTTTA
GTAAATTTAAAGCCGTAAAAGGGCAAAAAATGGGTGGTATCTATGTTAAA
TTGCTCAAAATAATTTTAGTACATGTGTCCTAAAATAACATTTTTGAAAA
ATAGGTGGGGGTATGTCAAAAATTTGCGAAAATCCTTTTAGTACTCATGT
ATGTATTACATTTTAGTACTGACCCCCCCTGTCCAAAACTAATATCCCAA
AGTAATAGGATTATTGTAGAGAGCTTTTTTCAGACTTGACTCTCTCACTG
CAGCATAGCAAAGGTTCCGATGGCCGATATCAAATAACTTCTATTTTTTT
TATTCTGTAGCTGGACATTGCAATCGATGGAGCAGATGAAGTTGATATAG
AGGGAAATTGTATCAAGGGAGGTGGAGGTTGCTTAACCCAAGAAAAAATA
GTTGCATCATGTGCAAAAACTTTCATTGTCATTGCTGATTCTACAAAAAG
TTCTACTAAGCTTGGGGAAAAATGGAAGAAAGGGGTTCCAATTGAAGTAT
TACCTATGGCATACAGAGTTGTAATGTTAAAACTAGAACAATTAGGCTTG
AAACCAATCTTAAGAATGGCAAAATCCAAAGCAGGACCACTTGTGACTGA
CAATGGAAATTTTATTATTGATTTTGGATTCGATGAAATTTCAGATTGGA
AATCGATGAATGATAAGATCATCAACATACCAGGTGTTGTAGAAACTGGA
CTTTTCATTAAGATGCACAAATGTGCCATTTTTGGAAACCAGGATGGTTC
CATAACTACTGTAAATCTATAGAATATATATTTTGAGTTTTAAAATTTGT
ATCTTTTTTATTCAGACTTATTTTTTGCTATTATTTATTTTTCTTAGAAA
ATCAAAGAAAAAAGTTGTTTAGTATAATGAGACCTTGTGTAGATTTGATA
AATGTTTTAATGTTTACATAAGTAAGTAAGTAAGTAAGTAACTATTTATT
TACCATTTGAACACTTAAAATACATGAGACGGTATCCACAAAATAAAAAA
GGATGGAGACCGCCTTATAGCCT Coding sequence (CDS) from alignment at scaffold_329:734056..736328- >TCONS_00059617 ID=TCONS_00059617|Name=TCONS_00059617|organism=Clytia hemisphaerica|type=CDS|length=1398bp|location=Sequence derived from alignment at scaffold_329:734056..736328- (Clytia hemisphaerica)
CTGGACATTGCAATCGATGGAGCAGATGAAGTTGATATAGAGGGAAATTG
TATCAAGGGAGGTGGAGGTTGCTTAACCCAAGAAAAAATAGTTGCATCAT
GTGCAAAAACTTTCATTGTCATTGCTGATTCTACAAAAAGTTCTACTAAG
CTTGGGGAAAAATGGAAGAAAGGGGTTCCAATTGAAGTATTACCTATGGC
ATACAGAGTTGTAATGTTAAAACTAGAACAATTAGGCTTGAAACCAATCT
TAAGAATGGCAAAATCCAAAGCAGGACCACTTGTGACTGACAATGGAAAT
TTTATTATTGATTTTGGATTCGATGAAATTTCAGATTGGAAATCGATGAA
TGATAAGATCATCAACATACCAGGTGTTGTAGAAACTGGACTTTTCATTA
AGATGCACAAATGTGCCATTTTTGGAAACCAGGATGGTTCCATAACTACT
GTAAATCTATAGATGTCTTTGAATGCGGGCAAAAATGCAGCTGCAGTTGA
AGCAGTGAATAAGTTTGTCACAAACAACCAAAACATTGGGATAGGAAGTG
GATCCACCATCGTGTTCGCTGTAAAGAGATTGGCTGAAAGAGTTACTGCA
GAAAATTTGCAAGTGAAATGTGTTCCAACATCATTTCAAGCAAAACAATT
GATAACAGAAAACAATTTGTTTTTGAGTGACCTTGAACAGACCCTAGAGC
TGGACATTGCAATCGATGGAGCAGATGAAGTTGATATAGAGGGAAATTGT
ATCAAGGGAGGTGGAGGTTGCTTAACCCAAGAAAAAATAGTTGCATCATG
TGCAAAAACTTTCATTGTCATTGCTGATTCTACAAAAAGTTCTACTAAGC
TTGGGGAAAAATGGAAGAAAGGGGTTCCAATTGAAGTATTACCTATGGCA
TACAGAGTTGTAATGTTAAAACTAGAACAATTAGGCTTGAAACCAATCTT
AAGAATGGCAAAATCCAAAGCAGGACCACTTGTGACTGACAATGGAAATT
TTATTATTGATTTTGGATTCGATGAAATTTCAGATTGGAAATCGATGAAT
GATAAGATCATCAACATACCAGGTGTTGTAGAAACTGGACTTTTCATTAA
GATGCACAAATGTGCCATTTTTGGAAACCAGGATGGTTCCATAACTACTG
TAAATCTATAGATGTCTTTGAATGCGGGCAAAAATGCAGCTGCAGTTGAA
GCAGTGAATAAGTTTGTCACAAACAACCAAAACATTGGGATAGGAAGTGG
ATCCACCATCGTGTTCGCTGTAAAGAGATTGGCTGAAAGAGTTACTGCAG
AAAATTTGCAAGTGAAATGTGTTCCAACATCATTTCAAGCAAAACAATTG
ATAACAGAAAACAATTTGTTTTTGAGTGACCTTGAACAGACCCTAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059617-exon-scaffold_329-1575043694:736021..736328 | TCONS_00059617-exon-scaffold_329-1575043694:736021..736328 | Clytia hemisphaerica | exon |
| TCONS_00059617-exon-scaffold_329-1575043694:734056..734768 | TCONS_00059617-exon-scaffold_329-1575043694:734056..734768 | Clytia hemisphaerica | exon |
| TCONS_00059617-exon-scaffold_329-1510915933:736021..736328 | TCONS_00059617-exon-scaffold_329-1510915933:736021..736328 | Clytia hemisphaerica | exon |
| TCONS_00059617-exon-scaffold_329-1510915933:734056..734768 | TCONS_00059617-exon-scaffold_329-1510915933:734056..734768 | Clytia hemisphaerica | exon |
| TCONS_00059617-exon-scaffold_329-1491911889:736021..736328 | TCONS_00059617-exon-scaffold_329-1491911889:736021..736328 | Clytia hemisphaerica | exon |
| TCONS_00059617-exon-scaffold_329-1491911889:734056..734768 | TCONS_00059617-exon-scaffold_329-1491911889:734056..734768 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:734056..736328 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004788 | Ribose5P_isomerase_typA |
| IPR020672 | Ribose5P_isomerase_typA_subgr |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0009052 | pentose-phosphate shunt, non-oxidative branch |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004751 | ribose-5-phosphate isomerase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0009052 |
pentose-phosphate shunt, non-oxidative branch |
| molecular_function |
GO:0004751 |
ribose-5-phosphate isomerase activity |
Blast
BLAST of TCONS_00059617 vs. Swiss-Prot (Human)
Match: RPIA (Ribose-5-phosphate isomerase OS=Homo sapiens GN=RPIA PE=1 SV=3) HSP 1 Score: 256.144 bits (653), Expect = 2.038e-82 Identity = 133/222 (59.91%), Postives = 159/222 (71.62%), Query Frame = 3
Query: 90 KNAAAVEAVNKFVTNNQNIGIGSGSTIVFAVKRLAERVTAENLQVKCVPTSFQAKQLITENNLFLSDLEQTLELDIAIDGADEVDIEGNCIKGGGGCLTQEKIVASCAKTFIVIADSTKSSTKLGEKWKKGVPIEVLPMAYRVVMLKLEQ-LGLKPILRMAKSKAGPLVTDNGNFIIDFGFDEISDWKSMNDKIINIPGVVETGLFIKMHKCAIFGNQDGSI 752
K A AV V NNQ +GIGSGSTIV AV+R+AERV ENL + C+PTSFQA+QLI + L LSDL++ E+D+AIDGADEVD + N IKGGGGCLTQEKIVA A FIVIAD K S LG++W KG+PIEV+PMAY V + Q G LRMA +KAGP+VTDNGNFI+D+ FD + W +N I IPGVV+TGLFI M + FG QDGS+
Sbjct: 82 KKLAGRAAVENHVRNNQVLGIGSGSTIVHAVQRIAERVKQENLNLVCIPTSFQARQLILQYGLTLSDLDRHPEIDLAIDGADEVDADLNLIKGGGGCLTQEKIVAGYASRFIVIADFRKDSKNLGDQWHKGIPIEVIPMAYVPVSRAVSQKFGGVVELRMAVNKAGPVVTDNGNFILDWKFDRVHKWSEVNTAIKMIPGVVDTGLFINMAERVYFGMQDGSV 303
The following BLAST results are available for this feature:
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