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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059615 ID=TCONS_00059615|Name=TCONS_00059615|organism=Clytia hemisphaerica|type=transcript|length=1372bp
aaatttttataaaattgagcaaaatttaaagcttcgaggcattttgattg
attttcttcACTCTTCTGTCTGGAGTAGAAATTATTATTCAACCTGATCA
TTTTTTATACATTGCCTTGCTTTCCCTTTTTTTTCGTCTGTAGGCCACTT
TTTAAATGCATAGCCTTTCATTAATTTTATTTAGCTTTGTTTTAGAACAA
TAAACATATTTCCTAATTTTAATGGGACTATTGATACATTAataatatgt
tattttgaaatgaTTGTTGAAGGCAAATTGCTCTCTCAAGATGGCAGTTT
TATCTTTTACAAACAACGAAAAGCTATCAATCTTTCAAAACCTGGTGTGG
TATATTTAGCTGGTTACGGGTCTGACTTGAATTGTAAGAAAGCCAAACAT
GTAGACCAGTATTGTGCAGAGAATGGTTTATCTTGTTTGAGATTTGATTA
TTCTGGTCATACTCATTCAAGTGGAAATCTTGTAGATGCAACACTTTCAT
TATGGAAACAGAATTTTCTTGACATTCTTGACAAATTAACAACAGGCCCA
CAAATCATCATTGGTTTTAGTATTGGCGGTTTGGTTTCATTTGTTGGAGC
CTTGGAACGACCAGAGAGAATCCATAGcattatttcaatttcaaatgcTG
CTGATGCAACTTACAACAACTTTCATATTCACAGAACTGATGAAGAGAGA
CAAATGGTCAAAGATAAAGGTTACTTCATGAGCAGAGTAAATCATGTTGT
TTGTTATGACTTGTGCATTGACAGTAAAAACCACTTACTCGTGCACGACT
CTGTTAAAGAAATCGCCCTGAATTGTCCTATACGTTTCTTGCATGGTATG
TCTGATACAACTATACATTGGAAAGTCTCTGTGGCGTTAGCCAAGAAGGT
TGTTAGTCAAGATGTCAAAGTTCAACTGGTGAAAACAGCAAAACATGGAT
TTAATTCTAAAAACGAGTTGAATATACTGAAAGAGACTTTGAATGAATTG
GTTGGAATGGATAGCCATAAATCTAAATTGTAAAAGTATTGTAATGCTAA
Taatatgattttcaaatttacatatttttcccatttttcttttttctttt
tgatggtttccttcactaagCATTGCGCTGTAGTTTTGATGAAGATGATA
AATTATTCtatacatatttttaaaattttaagctGCAACCAGTAATATCA
ATTAggtattattgtttttttttacaaaaagcaAACCAAATCATTTATCG
AATTTGGCTCTAACCTTTAGATCTAATTAAAAGAGTacaatattttatca
tttaaaatctccaaaaattgtaaataaatGAATATGAATAGACAAACTTT
CACGTCAACGATTGAAGATGAC Run BLAST on NCBI transcript from alignment at scaffold_329:722976..728533- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059615 ID=TCONS_00059615|Name=TCONS_00059615|organism=Clytia hemisphaerica|type=transcript|length=5558bp|location=Sequence derived from alignment at scaffold_329:722976..728533- (Clytia hemisphaerica)
AAATTTTTATAAAATTGAGCAAAATTTAAAGCTTCGAGGCATTTTGATTG
ATTTTCTTCACTCTTCTGTCTGGAGTAGAAATTATTATTCAACCTGATCA
TTTTTTATACATTGCCTTGCTTTCCCTTTTTTTTCGTCTGTAGGCCACTT
TTTAAATGCATAGCCTTTCATTAATTTTATTTAGCTTTGTTTTAGAACAA
TAAACATATTTCCTAATTTTAATGGGACTATTGATACATTAATAATATGT
TATTTTGAAATGATTGTTGAAGGCAAATTGCTCTCTCAAGATGGCAGTTT
TATCTTTTACAAACAACGAAAAGCTATCAATCTTTCAAAACCTGGTGTGG
TATATTTAGCTGGTTACGGGTCTGACTTGAATTGTAAGAAAGCCAAACAT
GTAGACCAGTATTGTGCAGAGAATGGTTTATCTTGTTTGAGATTTGATTA
TTCTGGTCATACTCATTCAAGTGGAAATCTTGTAGATGCAACACTTTCAT
TATGGAAACAGAATTTTCTTGACATTCTTGACAAATTAACAACAGGTGAT
TAAAATTTAGCTATCTATTGGGCTCTTTTGCTCTGTCCGGGGGGCCAAAA
GTTACTTTGTCCGGGAGGTAAATCACTGAAAATTGTTATATCCTCCACCC
CCCCATATTCAAATTATTTCTGGAATAGCCCATTGCAAGATTTATTCAAT
TTATAATTTTTGGTGTGTATAACATTATAAAGAAAGTGAAGCTAGAAATT
AGATTCTTTCTAACGTTTAAATGCAGTAAATTTAAATTCTCTTTTACTGT
TTGAATATCTTAAATTCATCCAAAAAAGTGTATTTTCTATCCATGTCCGC
AGATCATTGTTTGCTCAAGCATGGGGTGTTGGGTGGCTATACTTGGCACT
CTTGATCGACTAAATCGAATTCATAGTATAATCTCAATTGCAAGTGCTGT
TGATACAATGTACCATAGGTTAGCTCATATAAAAGCAATTAATATTTTTT
AGTTTGCACAGATTTTGAATCTAGTTGCCCTAAACTTATTTTCCAAGTTA
TTAGCTTCTTTTAACACTGTAAAAAAATTGATATATTCAAAAGTTTAACA
CAAAGAACACGCTCTGCCTTTAGGTTTAAAGAGTTTTCAGAAGACGAGAA
AAACACCATAAAGCAACAAGGGTATTGGATTGGCCCAAAAACAGGTTCTG
TATTTGGGTACAACTTTTTACAAAGTTGTATTGATAATACGCTAATGACT
GTAAAGGAAAAGCAGATTCAAATCTATTGTCCCATTCGTATTTTACATGG
AATGAGTGATGATGTAGTTCCATATCAAGTATCATTGAAACTTTCCAAAA
TGATTTCCAGTAATGATATTGAAGTTCATTTGGTGAAACATTTTGATCAC
ATGATGAACTCTGATGAAGCCTTGGCATTGTTGAGCAAAGTTTTAGACGA
AATGGTTAAGGTTGGTTTGGATTCTGATGTTTATTTACAAGCACCTTCTA
AGCTTTGATTATTCCTAATTATCATGAAAGGGTACACAATGTGATCTGTA
GAGAAATATGCAGCATATTTCTCAACTTAGAACCTTGATGAAAGGTTTTG
TTTTTAAATAAGAGTGATAAAGTTTGCTTTCTCATCATTTTTAATTCACA
AGCTTTTCATATTGTATTGACACGGATGTGGAGCAAGACTGGTCAGAAAG
AGGAAAAGAAAAACATTTTTTCGCTTATATCAGCATAATATAACAAAAGG
CAGACACTGCCCTGATATGAAATAATGGGTTTGATATAAAACGAAAACAC
TTATGCAAAAATAAAACCTTTAACGATTACAAGTGATGATAAAATCATTA
ATTCATTTTTAGAAAAATCAAGAAATCATTTTAAATTTCAAAAAAGAATC
AATCTGAACAATCAATGAAATGCGTGATTGATTAAGAATGTCAATTGAAG
GGAGATTAGAACTGGAAAATGGAGATTATATCCATTATATCCAGCGAAAA
AGCCAAAACTTTACCAGACATGGGATTATTTATGTACATGGTTATGAATC
CCACTCTAATTGCCGACAAGCTAGATTTCTAGACAAATTTTGTACTGACA
ATGGTTTATCTTTTGTAAGATTTGATTTTTATGGTCATGGAAAATCGAGT
GGTACCTTATATGATTTGACGTTATCTAAAATGAAACAAAATTTTCTTGA
TGTTTTGGATAAGTTAACTCAGGGTAATGTATTCTCATTATTTTTCAAGG
TTTTGTTGGGGGTCATAATCAAAGGCGTCCAAAGTCGTTATAAGAGCATA
ATCATTTCTGATTATTCACGTTAAAAAGTCGGTTAGTGTAAAACACAGGT
CACAGGTCACAGGTCACGGGTCACAGGTCACGGGTCACAGGTCACAGGTC
ATACAAATTACAGACCGGAAAACTGTAACGCACTCGTAACATACAACCCA
TAACATACAACTCATAACAAAAGTTTCTGAAAATATTATATGTAAAGGAA
ATGTAATATCAAAATATGGTATTTAGAAGACTTAAACGACAAATCATCAA
CCCCAAAAATTGACAACAAATGACACCTAAATTATGTAAATAATGATGTT
ATCTCAAAGTATGAGGTTTTGTACACCAATTAACAATAAAATATTTATCA
TGCGTAATAGGATGCCGACGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNAAACATTTATAAAATATAATCCCATTGACGCTATT
TTCATCAATTCTTGTTATCATACCCAAGGTGATGCAGGAGATAAAATGAG
ATATGACATTAGTGATCGTGAAATAGCTATTTTCCTGTTAGGAGCTGTTT
AAGGCAAAGGTGAGATCGATATTCGAATATTTCTTTATTCTTTGTATATA
ACATTCGTAACATGCGTATAACATTGAAAAGATAACTTTTTTGCATGTGT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCTTTTTTGCATGTGTGATATAGATGTAATATA
TAATACAAGTATTACAGGTCCGTGTTATACACGGCATAAAACGCAAAATC
ACGTGGTAAGCACGTGGGTAGAATTTTAGCTTTAAAATAGTTCTAGATCA
ATAAAATACCTTTGGAATTATATCATTGACATTAACAACTGTTTTTCAAA
CATTTTCTTTGTGTTTTACAGTAATCAAAGCTGACCTGTCAACACTGACC
TGTGACCTGTGACCTGCGTTTTACACTAACCGTTAAAAAGTGGTTTCAAA
ATGATCTTAATAGACTGGTTCCATGTGGCCTCATTTTCACCAACAATTAG
CCATTTTTCTAGGACATGGTAGAAAGAATATGTACATGATGATTCAGTAA
AACCTTGATAGCTCAAAGTCTTATAATATTTTTCCATTTGGAAATAAAGT
TTTTTGTTTGTTTGTAGGTGAAATTTATATCAATAAGGAACAGATAGCTT
GCGTGAGGTTTACTTGAAGATACTCCATAACTGGATTTTGCCGATCCGGT
TTATAGGTATCAATTTCTGTAAAAGTGCGCGAAATAACACAAACATTATT
ATTTTAGGCCCACAAATCATCATTGGTTTTAGTATTGGCGGTTTGGTTTC
ATTTGTTGGAGCCTTGGAACGACCAGAGAGAATCCATAGCATTATTTCAA
TTTCAAATGCTGCTGATGCAACTTACAACAAGTAGGAATCGCCTTCAACA
CCCCTGTGACACAGACCTGCTGGGACCCCTACCCCCACTTGATAATTTTG
CCAAAACTTTAACCCATTGGGAAATTGACTTTGGTCTTATCCCCCATTTG
AAATTCAAGGGAAAGAATTGCACTCAAAAGAACACCTACTGGATTTTTTC
GACTTTGGAACAATAGAATTTCTATCCCAATTGAGATTTTGATAGAAATT
TTCATCCCCACTGTAAGAAAAATTCTCATTGTGAGAAAACTTCTTACAGG
GACTGCGAGACAATTTATTATTCAACAAAAAGACAAATTATACTTTCTAC
CAGGCCCAAATACATTTTTTTTGTTGAATAATAAATCCCAAAACTTACCA
ATACCGAGTTTATTTTCACAATTAAAGGAGATCTTGAAAATTAATTTCAA
AGATAATTAATAAAAATGTGTTTTTGAAAAGAGGGACTAATCAATTCATG
TGAATTATGAGGAATAAATTTCATTCTCTCTTGGTTTTTTTTTTGACAAA
ATGTAAAGAAGTAGAGCCTTGTGGCGAGTATCTCTTCCACACTTTCTTAA
TTTTTTAGAACTGGATAATTTTAAATGGAAAATTTCTGGAGGATATCGAC
GCTGTAATCGTGTCGTACTTTCATTGGGCTTGCTATTCCAGAAAAATTTG
TACCCCTAATGTTGTGGAGGTTTTTTTTGGGAAAGGTGACCTCCTGGATT
TTTTCAAGTATCAAGCCCTCCTTGGATTATTTTTCTCATTTTGTGGACCA
CCTTGGATTTTTTACCTCGTTTTACTGACCACCCTGGATTTTACACCTCA
TTTTACTGACCAAAACGAAAATTTGAAAAAGGAACAAATTTCATATGATA
CTTTCTTGTTTCATAGCTTTCATATTCACAGAACTGATGAAGAGAGACAA
ATGGTCAAAGATAAAGGTTACTTCATGAGCAGAGTAAATCATGTTGTTTG
TTATGACTTGTGCATTGACAGTAAAAACCACTTACTCGTGCACGACTCTG
TTAAAGAAATCGCCCTGAATTGTCCTATACGTTTCTTGCATGGTATGTCT
GATACAACTATACATTGGAAAGTCTCTGTGGCGTTAGCCAAGAAGGTTGT
TAGTCAAGATGTCAAAGTTCAACTGGTGAAAACAGCAAAACATGGATTTA
ATTCTAAAAACGAGTTGAATATACTGAAAGAGACTTTGAATGAATTGGTT
GGAATGGATAGCCATAAATCTAAATTGTAAAAGTATTGTAATGCTAATAA
TATGATTTTCAAATTTACATATTTTTCCCATTTTTCTTTTTTCTTTTTGA
TGGTTTCCTTCACTAAGCATTGCGCTGTAGTTTTGATGAAGATGATAAAT
AGACTTTGTGAACTTACTAAAACTTTTAACGCCACACATTATTCTATACA
TATTTTTAAAATTTTAAGCTGCAACCAGTAATATCAATTAGGTATTATTG
TTTTTTTTTACAAAAAGCAAACCAAATCATTTATCGAATTTGGCTCTAAC
CTTTAGATCTAATTAAAAGAGTACAATATTTTATCATTTAAAATCTCCAA
AAATTGTAAATAAATGAATATGAATAGACAAACTTTCACGTCAACGATTG
AAGATGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059615-exon-scaffold_329-1575043694:727989..728533 | TCONS_00059615-exon-scaffold_329-1575043694:727989..728533 | Clytia hemisphaerica | exon |
| TCONS_00059615-exon-scaffold_329-1575043694:724603..724726 | TCONS_00059615-exon-scaffold_329-1575043694:724603..724726 | Clytia hemisphaerica | exon |
| TCONS_00059615-exon-scaffold_329-1575043694:723236..723717 | TCONS_00059615-exon-scaffold_329-1575043694:723236..723717 | Clytia hemisphaerica | exon |
| TCONS_00059615-exon-scaffold_329-1575043694:722976..723196 | TCONS_00059615-exon-scaffold_329-1575043694:722976..723196 | Clytia hemisphaerica | exon |
| TCONS_00059615-exon-scaffold_329-1510915933:727989..728533 | TCONS_00059615-exon-scaffold_329-1510915933:727989..728533 | Clytia hemisphaerica | exon |
| TCONS_00059615-exon-scaffold_329-1510915933:724603..724726 | TCONS_00059615-exon-scaffold_329-1510915933:724603..724726 | Clytia hemisphaerica | exon |
| TCONS_00059615-exon-scaffold_329-1510915933:723236..723717 | TCONS_00059615-exon-scaffold_329-1510915933:723236..723717 | Clytia hemisphaerica | exon |
| TCONS_00059615-exon-scaffold_329-1510915933:722976..723196 | TCONS_00059615-exon-scaffold_329-1510915933:722976..723196 | Clytia hemisphaerica | exon |
| TCONS_00059615-exon-scaffold_329-1491911889:727989..728533 | TCONS_00059615-exon-scaffold_329-1491911889:727989..728533 | Clytia hemisphaerica | exon |
| TCONS_00059615-exon-scaffold_329-1491911889:724603..724726 | TCONS_00059615-exon-scaffold_329-1491911889:724603..724726 | Clytia hemisphaerica | exon |
| TCONS_00059615-exon-scaffold_329-1491911889:723236..723717 | TCONS_00059615-exon-scaffold_329-1491911889:723236..723717 | Clytia hemisphaerica | exon |
| TCONS_00059615-exon-scaffold_329-1491911889:722976..723196 | TCONS_00059615-exon-scaffold_329-1491911889:722976..723196 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:722976..728533 - |
Blast
BLAST of TCONS_00059615 vs. Swiss-Prot (Human)
Match: ABHDA (Mycophenolic acid acyl-glucuronide esterase, mitochondrial OS=Homo sapiens GN=ABHD10 PE=1 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 2.298e-38 Identity = 82/240 (34.17%), Postives = 137/240 (57.08%), Query Frame = 2
Query: 302 IFYKQRKAINLSKPGVVYLAGYGSDLNCKKAKHVDQYCAENGLSCLRFDYSGHTHSSGNLVDATLSLWKQNFLDILDKLTTGPQIIIGFSIGGLVSFVGALERPERIHSIISISNAADATYNNFHIHRTDEERQMVKDKGYFMSRVNHV------VCYDLCIDSKNHLLVHDSVKEIALNCPIRFLHGMSDTTIHWXXXXXXXXXXXXQDVKVQLVKTAKHGFNSKNELNILKETLNELV 1003
+ YK+ K PG++++ GY S +N KA ++++C G +C+RFDYSG S GN ++TL W+++ L I+D L GPQI++G S+GG + A+ RPE++ ++I ++ AAD F+ E ++ V+ KG + + V Y ++++H L+H I +NCPIR LHGM D + W S+ +A +V+S DV V L K + H K ++ +L T+++L+
Sbjct: 66 LAYKKLKG---KSPGIIFIPGYLSYMNGTKALAIEEFCKSLGHACIRFDYSGVGSSDGNSEESTLGKWRKDVLSIIDDLADGPQILVGSSLGGWLMLHAAIARPEKVVALIGVATAADTLVTKFN-QLPVELKKEVEMKGVWSMPSKYSEEGVYNVQYSFIKEAEHHCLLHSP---IPVNCPIRLLHGMKDDIVPWHTSMQVADRVLSTDVDVILRKHSDHRMREKADIQLLVYTIDDLI 298
The following BLAST results are available for this feature:
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