TCONS_00059599 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00059599
Unique Name	TCONS_00059599
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1705

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_329:567323..572436-

transcript sequence

>TCONS_00059599 ID=TCONS_00059599|Name=TCONS_00059599|organism=Clytia hemisphaerica|type=transcript|length=1705bp
TCAGAGTAAAGTATTTAAAAACAATATAACAAAAGTAATGAGTACGCAAG
CAATGAAGcataaaattgaagaagaaaatgaagtcCAAACTGGAAACGAC
GAAAACAAGACCCCAAATAACGgagaaCAGGAACCTTCAGCCAAGAAAGC
CAAACTTGAGAATGAAGGTACAAAACAAATCAACACGGCTGAATCATCGG
TGGTTGAAAACATCGAAGCTGAATCCAAAGTTGGGATGAAGATGTTGATC
AATAAATATCGTTTCCAAGGCATAATCAAGCAAAGGTTTTCCGACTTTAT
GGTTCGTGAAATTGATTTGGATGGAAACAAAACCTTTCTAACAGACACCA
ATCATGTGGATGATCAAAAGCCGGCTACAGAATCGAACAAAGGAGAACCA
AAAGAGATGAAAGATACAACATGCCCAATAGATGATGTGACATTGGTGAA
ACGAATTGATGATTTTGCCAAGAATGAAAGTGAAGAAACATTGGACGACC
GGATCACATTTCTTAATAATGATAAAGAGAACAGAAAGGCTTGCCATATG
TACTTCAAAACTAAATATCAAAATCTCGAAACGGATGTCATCAACAAGGA
AAATGATACTCGTGAATTTGTTATTTActacaagaaaagtaaaaaggGTG
ACCCCCGTGCACGTAAGAACAGAAACACAGAGGGCcaattctgccatttt
gttttacacaaacaaaacaaagatacCATGGATACGATTAATCTGCTGAG
TAAGAAGTTAAGAATCACTTCAAAACTATTCTCGTATGCCGGCACGAAAG
ATCGGCGCGCAACCACAATACAACGCGTGGCCGTCAAACAGTGCCGTTCG
AAACGCTTAAAGGAACTAAACAAAATACTTATCAATATCGTGTTGGGGAA
TTTCCAGTACAAATCAGAACCATTAAAACTCGGTGATCTCTCTGGGAATG
AGTTCACTTTGATCATACGAGACGTCACAAATGCAACGGAGAATCAAATT
ATGGATGCGTGTCGCTCACTTCAAGAGAACGGATTCGTCAATTATTTTGG
TTTGCAAAGATTTGGTACTGGAGGTGCCGGCACTCATGAGATAGGTAGAG
CATTATTGAAGGACGACTTTGAAAAGGCGTGCAACCTCATCCTAGCGGAG
CCGTCAGAAAACGATAACGATAGAAGCAAAGAACGAAATGCGCTCAAAAT
TTACTCCAACAACAAAGATCCACAGAAAGCCTTCCAAGCCTTACGAAACA
GGAACGGGATTGAAGGGAAATTGTTGTCCTGCCTGAAGAACTCACCTAAG
GATTTTCTAGGCGCATTGGGTAGACTACCACGTAACACACGATTGCTTTA
TCTGCATAGTTATCAAAGTTTCATTTGGAATAATGCTGTATCTTACAGGC
TTGAGaaGTTTGGATTCAAACCAGTGGTTGGAGATTTGGTATTGACGTCA
GAAACAGATGAAGAAGGTCATAAGAAGGCGAGACTCCTGACAGAAGATGA
TATCGCTTCCAACACATTCACTATTGAAGACATAGTTCTTCCTATGCCTG
GTTATGACGTCATCTATCCCAATAATTCGTGTTATGATTACATGAAATCG
TTGATGGAGAAAGATGGTTTAGACATCACAAACATGAGACGAGCACAAAA
GGATAATTCCTTGTCTGGAGCATATAGGACGTTTTTAGTGAAACCGAAAA
ATATG

Run BLAST on NCBI

transcript from alignment at scaffold_329:567323..572436-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00059599 ID=TCONS_00059599|Name=TCONS_00059599|organism=Clytia hemisphaerica|type=transcript|length=5114bp|location=Sequence derived from alignment at scaffold_329:567323..572436- (Clytia hemisphaerica)
TCAGAGTAAAGTATTTAAAAACAATATAACAAAAGTAATGAGTACGCAAG
CAATGAAGCATAAAATTGAAGAAGAAAATGAAGTCCAAACTGGAAACGAC
GAAAACAAGACCCCAAATAACGGAGTAAGTTTTTTTTATCCAGCGAACCG
TAGCCATTAAGATTGGGCATTGGGCTACTGTGCGCAATGTCATGGGTTCA
ATCCCTGGCTGGGTCAAACCAAATACTTTAGAATGGTTTTTGATACCTGT
ATGTCCCAATGTTCAGCAATTAAAGAGAAGGATTAAAGGATAGCTAAGCA
ATCCAGGGTAAAATATTGGCGCTCTCCCTACCTTCAGTCACCTTCAGTCA
CCGAAAAAGGAGCCTGTGGGTTGCCGCAGAGTGTGGTCGCACGACTTAAG
TTTGAGCCTTCATGATCTCAGGTCAGCGCTTTTATGCAGAAGTCAGCACT
TTACTTCAGTCATTTTGACTTTTTATATGTTATCACCGTCCTTTTCGTAC
AAATCATACAGTTTCCTCAAAAAAGCTTGAATTCCTTTCCTCTATACTAT
ATTTTAGCAATTTTTTGTTCTAAAACTGTACTATTATTGTCGGAAAAATG
TCATGTTTTTTGCTTACTAATTTTAAACAGGTCTATTGGAATCCTGTAAC
ATTATTACTGTATTTCTTATTATTTTTTCAGGAACAGGAACCTTCAGCCA
AGAAAGCCAAACTTGAGAATGAAGGTACAAAACAAATCAACACGGCTGAA
TCATCGGTGGTTGAAAACATCGAAGCTGAATCCAAAGTTGGGATGAAGAT
GTTGATCAATAAATATCGTTTCCAAGGTAAATGTCATAATATCGTGCATG
CCCTCATGAATAGTGTAATTCCTGTTGAAATTAAAAGATTAAATTAATTA
ATTAATTAAACCCTCTTGCAACTGCAGGCTATGCCGCGACTGTATTTATT
AGCTACATTACCTTTTTTTTTTAGCCAACTATCTTAAAGGGATGATCAGA
TGGTTTGAGATATTTTGCCTATAGATAGCTTCTATTTTTGGAAAAACTTC
TAAATTTTTCGGTGTACTTATTTTCCTGACTCAAGTTATACCACTTTGAA
ATATTGAACCTTTGCTTGAAAACAATAGAAAAGAGTTTGAAAAGTCCCTG
AAAAGTCCCATTTTTCGAGATTTCAAATTGGCATAACTTGAGTTAAGAAA
ATAAGTACACCGAAAAATTTAGACGTTTTCCCTAAAATCCTAGAAGCTAT
CTGCAGGCAAAATATCTCAGACCATCTGATTATCCCTTTAAAGCCAACGT
TAGATAAAAATGAAAATTCAAGAAAAAAACCATTTCAAAAGCTTCCCTCT
TCTCGATTTTAACTAAAATCCTGATTCATATTTTCTCGATCTTTTGTATG
TATTTTTCAGGCATAATCAAGCAAAGGTTTTCCGACTTTATGGTTCGTGA
AATTGATTTGGATGGAAACAAAACCTTTCTAACAGACACCAATCATGTGG
ATGATCAAAAGCCGGCTACAGAATCGAACAAAGGAGAACCAAAAGAGATG
AAAGATACAACATGCCCAATAGATGATGTGACATTGGTGAAACGAATTGA
TGATTTTGCCAAGAATGAAAGTGAAGAAACATTGGACGACCGGATCACAT
TTCTTAATAATGATAAAGAGAACAGAAAGGCTTGCCATATGTACTTCAAA
ACTAAATATCAAAATCTCGGTAAGTCCTATAATAATTGTTTTTCAATCCG
AGTCGCTAGAATCCTTTGAATCCTTCCAGGCAACAGTAATTCTCAATCAA
AATGCAAAAGTGTCACTCGTTTTTTTCTACCGTGTGGAAATTCTCAAGGG
AAGAAGTGTCTAGGATTACATTGACATGGTTTCTACCTGATAGAAAAAAA
AGAGTGTATATTTAAAGATGGATTGAGATAAAAATTGAAAGAATTTCACT
TCAAGTATTGAAAACATTTTTGAATGTTTCATCTTTATAGAAACGGATGT
CATCAACAAGGAAAATGATACTCGTGAATTTGTTATTTACTACAAGAAAA
GTAAAAAGGGTGACCCCCGTGCACGTAAGAACAGAAACACAGAGGGCCAA
TTCTGCCATTTTGTTTTACACAAACAAAACAAAGATACCATGGATACGAT
TAATCTGCTGAGTAAGAAGTTAAGAATCACTTCAAAACTATTCTCGTATG
CCGGCACGAAAGATCGGCGCGCAACCACAATACAACGCGTGGCCGTCAAA
CAGTGCCGTTCGAAACGCTTAAAGGAACTAAACAAAATACTTATCAATAT
CGTGTTGGGGAATTTCCAGTACAAATCAGAACCATTAAAACTCGGTGATC
TCTCTGGGAATGAGTTCACTTTGATCATACGAGACGTCACAAATGCAACG
GAGAATCAAATTATGGATGCGTGTCGCTCACTTCAAGAGAACGGATTCGT
CAATTATTTTGGTTTGCAAAGATTTGGTACTGGAGGTGCCGGCACTCATG
AGATAGGTATGTCAGCCAATTTTGTATGTCACCCAATTATGTATATGTGT
ATTGATTCTTTTGGGCTTTGGCAAGGTCCGTCTAATAGAAGTTTATATGC
AAACTCGACAAATTAGACGTGCGAAAGAAAAAGAGTGCATAAACTTACAC
ATGTACCACTTTCACTAAGAAAAAATAATACTTTAGGTATACAAAATTTC
GCGAGCAGAAATTTTCGAGATTTTCGCGAATTTTGGCCTTTTTCCGCGAA
AGTAAATGTCCGTTGAATATTCCTTAAAGAAGTGATTTGCGTTAGTTTAT
GCTCGCGAAAGTTTGTACGCCTAAAGTATACTCCAAATCTTTTACAGCTG
TATCATCTACATAACCTTACGTGTTCTCTTACTTTGAAAACAACTTTCAC
AGGTAGAGCATTATTGAAGGACGACTTTGAAAAGGCGTGCAACCTCATCC
TAGCGGAGCCGTCAGAAAACGATAACGATAGAAGCAAAGAACGAAATGCG
CTCAAAATTTACTCCAACAACAAAGATCCACAGAAAGCCTTCCAAGCCTT
ACGAAACAGGAACGGGATTGAAGGGAAATTGTTGTCCTGCCTGAAGAACT
CACCTAAGGATTTTCTAGGCGCATTGGGTAGACTACCACGTAACACACGA
TTGCTTTATCTGCATAGTTATCAAAGTTTCATTTGGAATAATGCTGTATC
TTACAGGCTTGAGGTGAGTGATTTTACGCAGAAAGTTTCAATGTAAAAGA
AATGTGCCATGTGTTGTGTAACTTTCCCAACAAAGTGTCTTCTCATTTTT
AATTGATGTTACAATCGTGACCCATGAAAAAATTCCTTGTTCAAACCAAA
GAATCTATTGTTTTAATCTATTGTTTTGGAAAATTTCTTTATGTACCCTG
TAGGAGTAGCAAAGTTTTTATGTACTTTCGGGTACCTAATAATTGGAATA
AGCGAGGTGGGTGGAAAAATTCTGAAAACTTAATAAGGGGGGGGGGGGGG
GAAAAATTTTAAAAACTTAAAAGGGGGGGGGGGGAAAAATTTTAAAAACT
TAAAAGGGGGGGGGGGGAAAAATTTTAAAAACTTAAAAGGGGGGGGGGGG
AAAAATTTTAAAAACTTAAAAGGGGGGGGGGGGAAAAATTTTAAAAACTT
AAAAGGGGGGGGGGGGAAAAATTTTAAAAACTTAAAAGGGGGGGGGGGGA
AAAATTTTAAAAACTTAAAAGGGGGGGGGGGGAAAAATTCTGAAAACTTA
ATAAGGGGGGGGGGGGGGCGGAATAAAAATGTCATGGGTGGAAAATTTTT
GGGTAATACAGCAGAATTAGGACAAAAGAGGGAATTTAAAAAAACATTTT
CTCAAGAATTAATAAGCGGTGGAGGGACGCTTTTTAGGTACCCTTATTAT
GTACCCGAGAGTAAATTTCCAGTTTTGACATCCGCATTTTTTCTTTTTAC
AGAAGTTTGGATTCAAACCAGTGGTTGGAGATTTGGTATTGACGTCAGAA
ACAGGTACAGATATGGATTTAGTTCAAATTAGGAAACAGAACTTTTAAAA
GAAAAAATGTGAACAATTTTGATAGATAATTGTCAATTGCTACCTGTTCA
AAGAATACTTCAACTATCATTTATCTCTAACATAAGAAAAAGGCAAGAAG
GACCTGTCAAAAGACAAACCAGAGAGGACCTATCTATTCATTATTTTGGG
CCTGGTATTGGGCCATTCCATTTTATATCCATACAGTAGGAGGGGGGTTG
GACGAACATTTCCAGGTGGAGGTTATCAGAAAAGAAGTTCCACGGGGTAT
AAAGGAGTATTTTTTCATTTTTCCAGGGGTTAAAAGGTTATTCTATAATT
TCCAAAGGATAAAAGACTGATTTTAGTTCGTCAACCCTCACTTCTAAGAT
ATAAAAAGATTTTTCCAAAGGTTTCTTTACAATTCTTGCCATTTTCCAGG
GGGTATCCTATCCATATATTTCTAAGAATCTTTTATGGCCTTAAAAAGTT
CGCCCACCACAATGTTAATTAAATGGAATTGCTGCCGAATTTAATTTTTT
TCCTAAAGAACGCTAACAATAAATAAAAAAGATGAGGATCATTTGAAAGC
TATGATTCTCCTTCACCGTAGATGAAGAAGGTCATAAGAAGGCGAGACTC
CTGACAGAAGATGATATCGCTTCCAACACATTCACTATTGAAGACATAGT
TCTTCCTATGCCTGGTTATGACGTCATCTATCCCAATAATTCGTGTTATG
ATTACATGAAATCGTTGATGGAGAAAGATGGTTTAGACATCACAAACATG
AGACGAGCACAAAAGGATAATTCCTTGTCTGGAGCATATAGGTATGTTCT
AGTTGATGCTTTGGTTAAGTCGTCCAGGGTCACGTTTTATTGCTGGGAAT
ATACCGGCCCATTAGCGCCAGGTGGTTGTTAAAAAAATCATTTTCGCAAT
GTATTTATATGTCACTTACAACCAATCAGCTATTGGGTCCGTGATGTAAT
GTCAGAAAACATTGCAATGGAGCACGTCATGAACAGACAAATTAACAGTG
TTTTAAAGAACTTTTTACAATTTTTACTCTATTTAGGACGTTTTTAGTGA
AACCGAAAAATATG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_037488	XLOC_037488	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_329	supercontig	scaffold_329:567323..572436 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.992315	0.218534	8.34019e-06	0	3.69745	3.98105	1.06461	0.72581	2.77455	6.36078	0.48482	3.9773	7.03819	3.32785	1.3505	1.30317	0	0	0	0	1.48981	0	0	0	0	0

Blast

[Close]

BLAST of TCONS_00059599 vs. Swiss-Prot (Human)
Match: PUS7 (Pseudouridylate synthase 7 homolog OS=Homo sapiens GN=PUS7 PE=1 SV=2)

HSP 1 Score: 371.318 bits (952), Expect = 2.145e-119
Identity = 200/503 (39.76%), Postives = 306/503 (60.83%), Query Frame = 2

Query:  221 ESKVGMKMLINKYR-FQGIIKQRFSDFMVREIDLDGNKTFLTDTN-HVDDQKPATESNKGEPKEMKDTTCPIDDVTLVKRIDDFAKNESEETLDDRITFLNNDKENRKACHMYFKTKYQNLETDVINKENDTREFVIYYKKSKKG--DPRARKNRNTEGQFCHFVLHKQNKDTMDTINLLSKKLRITSKLFSYAGTKDRRATTIQRVAVKQCRSKRLKELNKILINIVLGNFQYKSEPLKLGDLSGNEFTLIIRDVTNATENQIMDACRSLQENGFVNYFGLQRFGTGGAGTHEIGRALLKDDFEKACNLILAEPSENDND---RSKERNALKIYSNNKDPQKAFQALRNRNGIEGKLLSCL-KNSPKDFLGALGRLPRNTRLLYLHSYQSFIWNNAVSYRLEKFGFKPVVGDLVLTSETDEEGHKKARLLTEDDIASNTFTIEDIVLPMPGYDVIYPNNSCYDYMKSLMEKDGLDITNMRRAQKDNSLSGAYRTFLVKPKNM 1705
            E+ VG+   ++ ++ F GI+K+R+SDF+V EI  DG  + L D +  VD++ P+ +       E K            +R+++    +++ET    I  + + KE R   H   K+ +  LET   ++E   +  V Y+   KK   +PR      + G +CHFVL+K+NKDTMD IN+LSK LR+   +FSY GTKD+RA T+Q +AV +  ++RL  LNK L+N  LGNF Y+  PLKLG+L GN FT+++R++T  T++Q+  A  SL+E GF+NY+G+QRFGT    T+++GRA+L++ + +  +LIL   S  +     + +E      ++  KDP  A + L  +  +EG+LL  L K   K+ + A G +PRN RL+Y+HSYQS++WNN VS R+E +G KPV GDLVL   T       A  + EDD+  N ++I D+V+P+PG+DVIYP +   +  + ++  D LDI NMR   +D SLSGAYR  +++P+N+
Sbjct:  111 EADVGITKFVSSHQGFSGILKERYSDFVVHEIGKDGRISHLNDLSIPVDEEDPSEDIFTVLTAEEK------------QRLEELQLFKNKET-SVAIEVIEDTKEKRTIIHQAIKSLFPGLETKTEDREGK-KYIVAYHAAGKKALANPRKHSWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKITAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRNIT-GTDDQVQQAMNSLKEIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREE-----WAKTKDPTAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNMVSKRIEDYGLKPVPGDLVLKGAT-------ATYIEEDDV--NNYSIHDVVMPLPGFDVIYPKHKIQEAYREMLTADNLDIDNMRHKIRDYSLSGAYRKIIIRPQNV 584

The following BLAST results are available for this feature:

BLAST of TCONS_00059599 vs. Swiss-Prot (Human)

BLAST of TCONS_00059599 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PUS7	2.145e-119	39.76	Pseudouridylate synthase 7 homolog OS=Homo sapiens...	[more]

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TCONS_00059599 (transcript) - C. hemisphaerica