TCONS_00059572 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059572
Unique NameTCONS_00059572
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length873

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059572 ID=TCONS_00059572|Name=TCONS_00059572|organism=Clytia hemisphaerica|type=transcript|length=873bp
GTAGAAATTCAGATTTACACATTTTGATATATATTTCAAGCAATAAATAG
TAACGCCCTTTAACAACGCCCAATTTGCCAATTTGAATCTAGCAAAATAA
CCAAAACCAACACAAACAGCAATTTCAGAGATGAGAAGAAACATTCGCAC
GAGAAAagttcaagatggcggacgaaGAAGATGTTGGAGATGGCATGGGA
GGATTTGATGATGACATGGACAATGCTGGGGATGATGACTTTGAGGAACC
TGATGAGAATTTGGGTGACGACATGCCTCAAGTAGATGTGCTCCCTGCAA
CAGATGATAACCAACCACAAGCTccaaagaaaaaagtgacaactCCATAC
ATGACAAAATATGAAAGAGCAAGAGTTCTTGGTACAAGGGCTTTACAAAT
CAGtaTGAATGCTCCTGTGATGGTTGAGCTGGAAGGTGAAACAGACCCTC
TACAAATTGCCATGAAAGAATTAAAAGCCAGAAAAATCCCTATCATTATT
CGACGATACCTACCAGATGGAAGTTTTGAAGATTGGGCAATTGATGAGCt
gattattgattaaaaacttttGGATTGTAGTACTAGCACAtagtttattt
ataagaacttttttattgtaaatattgGTGGTCAAACTCAATTCTTTTCA
GTGGTGCTAAATCAAATTTACTTCAGAGAAGACAGAGGAAGAAACATTTA
AGGAACAAAACTTTTTTACCCTGTGAAACGGACACACAAAGCAATATACT
ATGAACAATAAAAATGACATCATCATTTTGTAATGAACAGCACGGCATTT
ATTTTGTATTCTGAAATACATcattttatatttgttttacTATATCTTCC
TTacttttttggggaaataaTCG
Run BLAST on NCBI

protein sequence of TCONS_00059572-protein

>TCONS_00059572-protein ID=TCONS_00059572-protein|Name=TCONS_00059572-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
MADEEDVGDGMGGFDDDMDNAGDDDFEEPDENLGDDMPQVDVLPATDDNQ
PQAPKKKVTTPYMTKYERARVLGTRALQISMNAPVMVELEGETDPLQIAM
KELKARKIPIIIRRYLPDGSFEDWAIDELIID
Run BLAST on NCBI

transcript from alignment at scaffold_329:56399..63900-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059572 ID=TCONS_00059572|Name=TCONS_00059572|organism=Clytia hemisphaerica|type=transcript|length=7502bp|location=Sequence derived from alignment at scaffold_329:56399..63900- (Clytia hemisphaerica)
GTAGAAATTCAGATTTACACATTTTGATATATATTTCAAGCAATAAATAG
TAACGCCCTTTAACAACGCCCAATTTGCCAATTTGAATCTAGCAAAATAA
CCAAAACCAACACAAACAGCAATTTCAGAGATGAGAAGAAACATTCGCAC
GAGAAAAGTTCAAGATGGCGGACGAAGAAGATGTTGGAGATGGCATGGGA
GGGTAATTTTACTTTAATTCTTTTCGATTTCTTTCACATTGAATCCTTCC
TTCAAAGGCAGAAGAATTCAATTTGTTATTTTAACCCTTTTGATACTCTT
CCTTGTACGATAAAGGGCTTTTGTGGCCTAAATCAGTCAGGGAAATCCTC
TTAAAATTGCGTGCTCATAATTTTTCTCTAAAAAGTTATTTTTTTAAGTT
TTAGTTTTATAATTTTCATATTTTTTTTCTAAAAAGTATATTGGTTTGAT
GGCTAACTGTGCCCAAAATAAAGTGAGCTTTTAACAAATTATTTTGTCAT
TGTAAAGAGGAAAGGCAGACTTAAAATTTGGTGTATGTTACCAGACAGTT
GGCAGATGATATCATACTCCAGGATGCAAGTGAAATTTTTCAATCCACGG
ACACACCCCCGTGGTACGGTTATTATCAGTTAGGGTTAGGGTTGGAGCTC
GAGAGTCGCAATATAAGGCCGAAGGCCTTCTTAGGGGCATTCGTACCGGT
AGCGTAGGGTTGGGAGCTTTCTTAATTAAGGTCTGTAAATTACACGCTAT
AAGTATTTGTGAATGACAGCTTTCTGTCGTGTCTCATTGACGTAAGCGGT
TAGGCGTTGGGGTTGTAAACCAAGGTTGCTTGCATTTGGTGGTTCGAGCC
AGAAAAATACTTAGAAAACAGTTAGAAACACTTGAGAAAGACAGAAAATC
AGGATAGTAGATAGGAAATTAGAAAATAGGGGGAAAATAAGAGACGGTGC
ATCCAGGAGTATGATATTGTTTGCCAACCCAGATCCAGTATGGGGCGGAT
TTCGTGTAACTAACGCCGAAGATCTTCGGCGTACAACTGAAACGTTTTTG
GCGCATTGGCGTAAGGGTACTTACAAAGATTGTTTGATTTTCAGTTGGCG
TAAAGTAATAATTCCAGCTCGGCATGAATGACTCCATAATCCATCGATTT
TTAGCTTTCATTTGGCTAAATTTATTGCTTTCGCTTGCTTATAGTTATGC
TCGCGTCAATTTATTAATTATGTCAGTGAGGCTGGAACATCGATTTTTGA
GGATTACGATTTTACCAGCTTTTTAGCGATTTTTGCCTCGCTAACCCAAA
TCTCGCAACCTCTTTATCTTAAAGGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTGCACTGAGGGTGGT
ACTTAGTTTCCGCCCTATTTTGCGCCCACCATAGAATGGTCCAAATACGG
GGGTATTCCAAATGATAAACGATGTCGTTCTGAGTGTTTTATTTTCTGCT
AGATACAAATAGTATATTGAATACTATTAACTTATTTATTTAAGTATTTT
TGAGCCCAAATTTAAATATCTGGTTAAATAAAAAACAAATGACATCAGTT
CTGTTTTTCCCTCAAACCCCCGGGAAAAGTTTTTTTGCCGACTTAGCTAT
TTTACAAATTTCGGAAAAGAACTCCCATAGGAATTCCGATTCATAACCCG
ATTGGTTCATTTCAGAACGGCTTCAAGAAAGTCATAATGGCAGATAAATT
TTAAAAGTTTCTCTGAGTAAATGTGTGTAATTTATTGATGTTGATAGCTT
GTTGATTCTTTAAAGAAGAAAGATAACAGGTATAGCTTTTTCTAATCCTG
GAATATCGAGGTTCCAGCTACACTGTATGTTGGCGCATGCGCCTCTTTTC
CCATCTTGCACCCTTATTGAAAAATTGAATGTTGGTACAAAAGAAATTTT
GCTTGGCGTGAGGCTTGCTGTACGGAAAAATATCTTTGGCGCGATATTTC
GTGGAATCCATACTGGTAATAGACAGTGTCAATCGAACGAATCGAACGAA
TACTACCTAGGATTTGCCATTTGATTGCTTCGATAACGTTCTATTGTATT
CGATTATGTTCGATTACGTTCGATTGATTTAGATTTTAATCGCTTTCGTA
CAATACTTTAGCGCTCGGCCGCCCATGCTAAAAAGCTCTAGCTTTTTTGT
AGTGTTAAATGGTAAATAGATACTTACTTACTTACTAACGGAGTGATCCA
ATTTAATTTAATCGCAATCAAACTCGTCGAACGTTATCGTAATCGAACAA
AATTGAATATTAAATTGAATGTAATTGACAATCAATCGAACCAATGGAAC
ATAGTCAACTATTAATCGAACCAATCTAACCTTACTCGAACGCAATCGAA
CACAATAGAATATTACCCAGGAATTGACCGAGATTCGATTACGTTCGACA
ATGGAATTCGCAATTATTCGATCGAGTTCGATTACGTTCGATTGGTTCGA
TTGCGATTTTTGTTCAAAGTTGTTCGATTGACACCGTCTGGATGTTACCG
GGCAAGGCATGAGATTGGGTAACATGCATCAGCGGAGGCTAACATGCATA
GCCCTCAAATGAATGACCTGGCTGGTCATTAAAATACAAAGTTGAATCAA
AACAAAAATAGTAGAGTAGAGCTGCTAGTTCATTTGTTTTGAAATTTTGC
TGCTTTGATTGCTGGTCAGTCATTTGATGGCAATACAAGTTTCCCTCCAC
TGATGCAAGTTACCCAACTTCACGGTATAACTTTTTTAATTTGTCAAGTT
ATAAGCTTTTAAAGTCAAAATTTGCTTTTGAAAAAGTCCAAAAACATGTC
AAACTTTTACAGAAACCCTCAAAATTTCACTTTGTTAATGACTTTTACAA
CTTAATTAATGATCCCAGCTGATTTTGTTCAATTATCCCAACAAAAGCTA
TAATAATAATAGGCAAATAATAGGAAAACAGTAATTCTGAATGATTCTTA
AAAAAAAATTAGTGAAAAATGTTTAAAAAAACTGATTTGATTTGATACTC
CTTTCTAAGTGTTTTTGGACTTTTTCAAAAGTGAATTTTATTTTAGAACC
ACACTGTACCAATTTTAAAAAGCTATCTGCCAACTTTCAAGTTTGTCTTT
CCCCTTGACAATTTAAAAAGAATATATTATATATACCAGGCGGTGTCAAT
CGAACTGTTCGATTATCGAACTTAATCGAACCCTATCGAACGATAGCTGT
TCGATTACCGAACCCAATCGAACACCTATCAAACCGGGAAAACATTTGTA
AAGTTTGATGACTGTTCGATTATACGATTAAAGTTCGATCGCAGTTCGCT
GAATACGATTGAGGTTCGATCAGTTCGATTAAGATCGATGAAGTTCGATT
GGTTTGCTTAAATCGATTTATACCTTGCCGCCAAATTTTTTATTTATGTT
CCGAGGGCGTATTGGCGGCCGCCCACGGGCCATTCTCGCGGGCCATCCTA
TATCTATCCCATCGAATGGGACAAGCTGGAGCTTTTACAAGCTCTTTGGT
CGTTAATTTGTAAAAAAAAGATTTTTATTTTTATTACTTTCTTTAAAGAA
AGTATCATCTCTATTATTTCAAATGAGCAATAATGAGTGAAGCATACGGT
GCCTGTGTTTTGATTAAACAACCTCGTAATTTTCTGAAAGGTAAAGAAAA
GTAGAATCAATCCGACACAATCATTGAACCACATCGAACTTTCATCGAAC
AACATCGAACTTAAATCGAACTCATCGAACATCAATCGAACTTCATCGAA
CAAAGAACACTCATCGAACTAAATCGAACTTATCAAGAATTTTTCGTAAA
GTTTGATAGCTGTTCGATCGGGTTCGGTAATCGAACAGCTATCGTTTGAT
TTTGTTCAATAAAGTTCGATGGTTCGATAACGAAAATCGGTTTGATAATG
TTTGGTTGACACCGCCTGGTATATATAGTAAAAATTCACATTATTTTGGA
CACAGTTATCCATCAAACCTTTATACTTTTTTCTGGGTCACCCGGTACAA
TAGATTTTGAGTAAGATAGTCAAAGGTCAATATCCCTTCTTCCTTGTCTT
ATTTTGGTACCCTTCTTATTGTTAGGATTAAAAAAGGTCAGAATCACTGA
TTGAAAAAAAAATGTTTTCCTCTCTGACTGTTTATTAGCAATCAGTGATT
CCGATTTTTTTTTGTTTTATTCTGGAATGCGTCTATTGACATTCTCTAAT
GAATGATTTTTTTAAAAGTAAAAACCCAATTTTTTCTTTATTGGTACAAC
AACGACCCTTCCAGCGCACCAGACTATCTGGTGATTAACACCAGACTATT
TTCATTTTATTGCGCGCATGACACACAGGACTTATTACAACCTGTTCAGT
GTTTGTATTGTCTGGTGCTAAAAAGTTTTCTCATTTGACACCTTCAAGTT
CAGTGCGTTGGCAGGGTGTTGTGTACTATGGAAATATAAGACTAGTGCTG
ATTGAACAGTTTTTTTATCTCATATAGATTTGATGATGACATGGACAATG
CTGGGGATGATGACTTTGAGGAACCTGATGAGAATTTGGTAAGCAATAAT
TTGTATGATAAAATATTTTGTATAAAATAGAATAGCTTTTCTAAGATATT
TTGAACTTAATCAAATCTCTTGCAAAGTCAGACAATGTTATTAAAGATCA
CAAATTTCTGAGAAAAATAAGTTTTTCAAAGCATAACCTTTTACAAACTA
TGGTTTCAGATAACATTCAACGTATCGCAGCCCATTGCATGAAAATTTTA
AAAGCATGCAGAAAATTAAGCCTTAATAAGCAGTTTCTCTTTGTTTATAC
AGGGTGACGACATGCCTCAAGTAGATGTGCTCCCTGCAACAGGTAACAAA
GTGCATAGCTCTTGATAATTTTCACAATCAACAGAGACTTTATTTGGATA
AAGCTTAAGAAGATATAATTTTATCGATATTTGATTTTTTAAATGGTAAA
ATAGGTTTTCCTAAATAGACTTAAATGTATATGTAATATGTAATTTATGT
AATTTTTTTGTAGATGATAACCAACCACAAGCTCCAAAGAAAAAAGTGAC
AACTCCATACATGACAAAATATGAAAGAGCAAGAGTTCTTGGTACAAGGG
CTTTACAAATCAGGTAATTGTGGAGTGATTTATTAAAAAGGGATAGTTTA
TTTTATGTCCTCAATGCTATGTATGTACAGTATGCAATTAGGGGTCATGA
CAACCCCTATTTATGTAGCTTTCCCCTTATCATGCATCCAATTTGTTTTT
TTAGTTTCCAATTAGGAGTTTACCAATTGAAATACGCAAAAAGCTTAAAA
TTTCTGTAGTAAAGTGTAAATGTAAAATGGTCGCACAAGTAAAAATTTTG
CCATTTACATTGATCCAATTATTTAGGTGTTATGATATGATATTACAGTA
TGATACATAATTTGATCAAAATATTGTTAACCCTCTACCCTAAAAGCTTT
AAAACCCCTATCGTATTTGGAAGAAGTCTTACACGTCAAAGCTTTTTTTT
TTAATATGAAAAGTTGGACTTGTGTGGAAAAGTTGGACTTACACTCTCTG
TGCAGATTCTGGCATTATGCCAAGCAACAGTTGTGATGTTGTTTGGAGGG
CGTTGTGATTTCTGTTAGATTACCTTTGTCCGCTTTGCCCATTGTGGATT
CTGTTATCAACAACTTAGTTTCTGTATTCAGCTTACTGAGGATTAAAGAA
TTTTTATGCTTAAAAAAGAAGAATATAGTATAAAGCAACGAAATTGCTAA
GCATGTAAATAAGTTTTATCTAAGAATATTAGAGAGGTATAATAAGTAAG
TGTATTATAATGATTATGCTGGCATTATGCCAAGGTTTTTTCATAAGTTC
GATTTCTTCAGTTAAATGAATGACAAAAGTGAAAGAAGTAAAATATATTT
GAATTATGTTTTTCATAATTTTACATTTTATACTCAAAGTAAACACATAT
CACTTATATATTCCTGATAATTTGGGAAAGTCAAGCTAAATGTGATATAC
TGACATGTAACAAATAGGTTCTGAAGTTCTAACCTCCATTTTCCCTGCAG
CGAATAGGTTGATCCTTAAAAAAACAACTTGGTAGTTAAAGGGTTAAAAA
AGGGTCCAAGCTGTAGAATGTTTTCAGACTGAATCATTGTCAATCAAACA
TTTTGATTATTTGTTTTGTTTTTAGTATGAATGCTCCTGTGATGGTTGAG
CTGGAAGGTGAAACAGACCCTCTACAAATTGCCATGAAAGAATTAAAGTA
AATCATTACATTATTTGTGCTTTTCAAAATGAAGTTTTTTTTTTTAATCT
TTATAGTATAATTTCTTTCAATGCAGCTTTAGTTTTATAGCTGCAAAATC
CAATACTCTACGGTCCTAACTCTTTGTCCTCGCTCTTTGTCCTCATCTTA
CATTGTCTGTTAAGCTACCAGAGTATTGGCCATCATTTATCTAAAGAAAA
TTGTAACAACAAGCATTTGTAAAAAAGATAGGTTCTTAGAGGCCCACGGC
GCACCTTGAACCTCAATCCTGAATAATATAATCAATGTTGCAACTTTTTC
GTCTGTAAACCAAAATCTGTCCAATTGAGATTTCAAACTAGGAGTTTCGT
CCTGGTAGCTTTGAAGCAATGATGTTAAATTGGTGTATAGTTTTGAACTT
TTCGCCCAGCTTCACCCAGCTTCACCAAAGGCAGTTGCAACACTGGGGCA
TAATCGAAGGTCATTTGCCCGTTGAAATACTCATACTCTCTTTCTCTCTT
TCAGAGCCAGAAAAATCCCTATCATTATTCGACGATACCTACCAGATGGA
AGTTTTGAAGATTGGGCAATTGATGAGCTGATTATTGATTAAAAACTTTT
GGATTGTAGTACTAGCACATAGTTTATTTATAAGAACTTTTTTATTGTAA
ATATTGGTGGTCAAACTCAATTCTTTTCAGTGGTGCTAAATCAAATTTAC
TTCAGAGAAGACAGAGGAAGAAACATTTAAGGAACAAAACTTTTTTACCC
TGTGAAACGGACACACAAAGCAATATACTATGAACAATAAAAATGACATC
ATCATTTTGTAATGAACAGCACGGCATTTATTTTGTATTCTGAAATACAT
CATTTTATATTTGTTTTACTATATCTTCCTTACTTTTTTGGGGAAATAAT
CG

Coding sequence (CDS) from alignment at scaffold_329:56399..63900-

>TCONS_00059572 ID=TCONS_00059572|Name=TCONS_00059572|organism=Clytia hemisphaerica|type=CDS|length=2394bp|location=Sequence derived from alignment at scaffold_329:56399..63900- (Clytia hemisphaerica)
AGCCAGAAAAATCCCTATCATTATTCGACGATACCTACCAGATGGAAGTT
TTGAAGATTGGGCAATTGATGAGCTGATTATTGATTAATATGAATGCTCC
TGTGATGGTTGAGCTGGAAGGTGAAACAGACCCTCTACAAATTGCCATGA
AAGAATTAAAATGATAACCAACCACAAGCTCCAAAGAAAAAAGTGACAAC
TCCATACATGACAAAATATGAAAGAGCAAGAGTTCTTGGTACAAGGGCTT
TACAAATCAGGGTGACGACATGCCTCAAGTAGATGTGCTCCCTGCAACAG
ATTTGATGATGACATGGACAATGCTGGGGATGATGACTTTGAGGAACCTG
ATGAGAATTTGATGGCGGACGAAGAAGATGTTGGAGATGGCATGGGAGGA
GCCAGAAAAATCCCTATCATTATTCGACGATACCTACCAGATGGAAGTTT
TGAAGATTGGGCAATTGATGAGCTGATTATTGATTAATATGAATGCTCCT
GTGATGGTTGAGCTGGAAGGTGAAACAGACCCTCTACAAATTGCCATGAA
AGAATTAAAATGATAACCAACCACAAGCTCCAAAGAAAAAAGTGACAACT
CCATACATGACAAAATATGAAAGAGCAAGAGTTCTTGGTACAAGGGCTTT
ACAAATCAGGGTGACGACATGCCTCAAGTAGATGTGCTCCCTGCAACAGA
TTTGATGATGACATGGACAATGCTGGGGATGATGACTTTGAGGAACCTGA
TGAGAATTTGATGGCGGACGAAGAAGATGTTGGAGATGGCATGGGAGGAG
CCAGAAAAATCCCTATCATTATTCGACGATACCTACCAGATGGAAGTTTT
GAAGATTGGGCAATTGATGAGCTGATTATTGATTAATATGAATGCTCCTG
TGATGGTTGAGCTGGAAGGTGAAACAGACCCTCTACAAATTGCCATGAAA
GAATTAAAATGATAACCAACCACAAGCTCCAAAGAAAAAAGTGACAACTC
CATACATGACAAAATATGAAAGAGCAAGAGTTCTTGGTACAAGGGCTTTA
CAAATCAGGGTGACGACATGCCTCAAGTAGATGTGCTCCCTGCAACAGAT
TTGATGATGACATGGACAATGCTGGGGATGATGACTTTGAGGAACCTGAT
GAGAATTTGATGGCGGACGAAGAAGATGTTGGAGATGGCATGGGAGGAGC
CAGAAAAATCCCTATCATTATTCGACGATACCTACCAGATGGAAGTTTTG
AAGATTGGGCAATTGATGAGCTGATTATTGATTAATATGAATGCTCCTGT
GATGGTTGAGCTGGAAGGTGAAACAGACCCTCTACAAATTGCCATGAAAG
AATTAAAATGATAACCAACCACAAGCTCCAAAGAAAAAAGTGACAACTCC
ATACATGACAAAATATGAAAGAGCAAGAGTTCTTGGTACAAGGGCTTTAC
AAATCAGGGTGACGACATGCCTCAAGTAGATGTGCTCCCTGCAACAGATT
TGATGATGACATGGACAATGCTGGGGATGATGACTTTGAGGAACCTGATG
AGAATTTGATGGCGGACGAAGAAGATGTTGGAGATGGCATGGGAGGAGCC
AGAAAAATCCCTATCATTATTCGACGATACCTACCAGATGGAAGTTTTGA
AGATTGGGCAATTGATGAGCTGATTATTGATTAATATGAATGCTCCTGTG
ATGGTTGAGCTGGAAGGTGAAACAGACCCTCTACAAATTGCCATGAAAGA
ATTAAAATGATAACCAACCACAAGCTCCAAAGAAAAAAGTGACAACTCCA
TACATGACAAAATATGAAAGAGCAAGAGTTCTTGGTACAAGGGCTTTACA
AATCAGGGTGACGACATGCCTCAAGTAGATGTGCTCCCTGCAACAGATTT
GATGATGACATGGACAATGCTGGGGATGATGACTTTGAGGAACCTGATGA
GAATTTGATGGCGGACGAAGAAGATGTTGGAGATGGCATGGGAGGAGCCA
GAAAAATCCCTATCATTATTCGACGATACCTACCAGATGGAAGTTTTGAA
GATTGGGCAATTGATGAGCTGATTATTGATTAATATGAATGCTCCTGTGA
TGGTTGAGCTGGAAGGTGAAACAGACCCTCTACAAATTGCCATGAAAGAA
TTAAAATGATAACCAACCACAAGCTCCAAAGAAAAAAGTGACAACTCCAT
ACATGACAAAATATGAAAGAGCAAGAGTTCTTGGTACAAGGGCTTTACAA
ATCAGGGTGACGACATGCCTCAAGTAGATGTGCTCCCTGCAACAGATTTG
ATGATGACATGGACAATGCTGGGGATGATGACTTTGAGGAACCTGATGAG
AATTTGATGGCGGACGAAGAAGATGTTGGAGATGGCATGGGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037481XLOC_037481Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059572-proteinTCONS_00059572-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059572-exon-scaffold_329-1575043694:63699..63900TCONS_00059572-exon-scaffold_329-1575043694:63699..63900Clytia hemisphaericaexon
TCONS_00059572-exon-scaffold_329-1575043694:59013..59073TCONS_00059572-exon-scaffold_329-1575043694:59013..59073Clytia hemisphaericaexon
TCONS_00059572-exon-scaffold_329-1575043694:58709..58748TCONS_00059572-exon-scaffold_329-1575043694:58709..58748Clytia hemisphaericaexon
TCONS_00059572-exon-scaffold_329-1575043694:58438..58537TCONS_00059572-exon-scaffold_329-1575043694:58438..58537Clytia hemisphaericaexon
TCONS_00059572-exon-scaffold_329-1575043694:57304..57375TCONS_00059572-exon-scaffold_329-1575043694:57304..57375Clytia hemisphaericaexon
TCONS_00059572-exon-scaffold_329-1575043694:56399..56796TCONS_00059572-exon-scaffold_329-1575043694:56399..56796Clytia hemisphaericaexon
TCONS_00059572-exon-scaffold_329-1510915933:63699..63900TCONS_00059572-exon-scaffold_329-1510915933:63699..63900Clytia hemisphaericaexon
TCONS_00059572-exon-scaffold_329-1510915933:59013..59073TCONS_00059572-exon-scaffold_329-1510915933:59013..59073Clytia hemisphaericaexon
TCONS_00059572-exon-scaffold_329-1510915933:58709..58748TCONS_00059572-exon-scaffold_329-1510915933:58709..58748Clytia hemisphaericaexon
TCONS_00059572-exon-scaffold_329-1510915933:58438..58537TCONS_00059572-exon-scaffold_329-1510915933:58438..58537Clytia hemisphaericaexon
TCONS_00059572-exon-scaffold_329-1510915933:57304..57375TCONS_00059572-exon-scaffold_329-1510915933:57304..57375Clytia hemisphaericaexon
TCONS_00059572-exon-scaffold_329-1510915933:56399..56796TCONS_00059572-exon-scaffold_329-1510915933:56399..56796Clytia hemisphaericaexon
TCONS_00059572-exon-scaffold_329-1491911889:63699..63900TCONS_00059572-exon-scaffold_329-1491911889:63699..63900Clytia hemisphaericaexon
TCONS_00059572-exon-scaffold_329-1491911889:59013..59073TCONS_00059572-exon-scaffold_329-1491911889:59013..59073Clytia hemisphaericaexon
TCONS_00059572-exon-scaffold_329-1491911889:58709..58748TCONS_00059572-exon-scaffold_329-1491911889:58709..58748Clytia hemisphaericaexon
TCONS_00059572-exon-scaffold_329-1491911889:58438..58537TCONS_00059572-exon-scaffold_329-1491911889:58438..58537Clytia hemisphaericaexon
TCONS_00059572-exon-scaffold_329-1491911889:57304..57375TCONS_00059572-exon-scaffold_329-1491911889:57304..57375Clytia hemisphaericaexon
TCONS_00059572-exon-scaffold_329-1491911889:56399..56796TCONS_00059572-exon-scaffold_329-1491911889:56399..56796Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_329supercontigscaffold_329:56399..63900 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
220.186	212.007	393.893	419.573	303.202	238.911	240.082	253.573	183.881	166.307	162.829	161.197	121.387	122.15	132.038	146.58	166.055	153.921	59.5239	76.0169	149.089	136.975	149.235	130.162	120.239	129.991	126.966	100.473	102.358	102.232
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006110Pol_omega/K/RPB6
IPR012293RNAP_RPB6_omega
IPR028363RPB6
IPR006111RpoK/Rpb6
IPR020708DNA-dir_RNA_polK_14-18kDa_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005665DNA-directed RNA polymerase II, core complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005665 DNA-directed RNA polymerase II, core complex
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
Blast
[Close]
BLAST of TCONS_00059572 vs. Swiss-Prot (Human)
Match: RPAB2 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Homo sapiens GN=POLR2F PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.470e-41
Identity = 69/87 (79.31%), Postives = 79/87 (90.80%), Query Frame = 3 
Query:  279 QVDVLPATDDNQPQAPKKKVTTPYMTKYERARVLGTRALQISMNAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDGSFEDWA 539
             V++LP+ +  +PQA +K++TTPYMTKYERARVLGTRALQI+M APVMVELEGETDPL IAMKELKARKIPIIIRRYLPDGS+EDW 
Sbjct:   35 NVEILPSGE--RPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWG 119
The following BLAST results are available for this feature:
BLAST of TCONS_00059572 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPAB21.470e-4179.31DNA-directed RNA polymerases I, II, and III subuni... [more]
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