TCONS_00059566 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059566
Unique NameTCONS_00059566
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3183

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059566 ID=TCONS_00059566|Name=TCONS_00059566|organism=Clytia hemisphaerica|type=transcript|length=3183bp
TAATATCGGTTTAGAATTCCGTCATAAAATGGTGCATCGCTTGAAAGATT
TACGGGAAGCTTACACAGTTGAAGAACTTCAAGCTAATGGCTCAGAAAAG
TTTAATTCAACCAGATTGGAAAGTATTCTATTTTTCAATGGATTGGTTGA
ACATTTCTGCTAAGAAAATAAAATCGAGATGAAACTACATATTCCAAACA
AATACAAGTCATTGTATGAATGGATGTGTTTTACTTCGccttcctttgaa
aatgaacTATTAGATGAAGTTGATTCAAAGATCTTCCCAAGGAGTTCACT
TCCCTTAGAGAAGATGAAGAAATACCATGGTCTTGAGATGAAAGGTACCA
TTCCATTGAAATATATTGCATTGGTGAAGTGCAATTAGAAGAGCATAAAT
CGTTGGATAGACATTTATCACAGTTACCGAAAACGTTTGGTCGCACTGCC
ATGAGAataaacaacaacaacaaaagaattACGTAAACAAAAGACCAATT
GTGTTCAAAGAATCAAGTTCAAATGGATATCAATTTATTACCAGATGAGA
TACTAGAAATAATCATTGCGTTCTCGGAAAAGGAAGATGCAAAAGCTTTA
TCACGAACATCAAAAAGAATGTATAATCTTACTATTGAACGAATTTGGTC
AAAACCAAGATTTTATGGGAAACGAGATCATTCTTTCTTGACAAAAATAA
CGAAATTTCCGATTAAAGAGTTGCATACAAACGATTTTAATTGTCTTTGG
TCCAAAATTTGTGATATCGTTTCTGGACTTGACTTATTACATATTGATTA
TAACGACAATGATGAAACCTTTGAAGACAGATTAGACGATATTTGTGAAA
TTGCAAAACCACCAATTGTTCTGCACACAAATGCCCTTAATATGAAATAC
AGAGACgactttgatttgtttttgaacGGAATTCTCGGCGGTGCTTGTTC
GATACGAAAGTTGATAATCAATCCCAAGTTTAGTAGCGATGAAAGAAGAA
ACTGTGCTTGGTCACCTAAACAACTTGAAATGGTCagtgaaaaagttttc
attgaGGAAATTTTGTCGAGTTCTTTATCGATCACTGATTTTGATGAGCT
TGTTAAAGTTTTGTGTAAACTTAAAGGAACACGTGTCAATATTTCTGAAA
CGTTCAATAACCAATATATTTTAACTGTTGAAGATTTGGATAAACTTGCA
TCGAATAACATAAAAGTTTTCAAGATTGATTGTGTTGCCCTTGAATATGG
TTTGTCGAGTGATGGCCTTACAAAGTTTGCTCCtgtactttcaaaatttc
aatctttGGAAGAGTTTAGCATTCGTCATGCTTACTGCCAAGATCCAATA
CCTATTCAGTTATTTATTGGTTTACCGCTAATTACGCTTTCTACAACACA
GATTCGTTGGGAAGCTGGTAAAATTGCTGAGATTGTTAAATTATTATCTG
AAATCAAAACCCTGACCCATTTAGACTTAATAAAAAGTAATCATTCAGAT
TATAAACTTTCCCTTGCGgattttgaacttttcaaaattttaccagTAGT
AATGTTTTTGGAGTTGGAAGCTTTAGATTTGACAAAGAAAAACGTTCCAG
AATTTCGTAACATCATGCTTgagatgaaaattgaagatattTACTGGTCT
TCTACGGGTGAATATtcgaattttgatatttctctaAAATCACATGGACC
AGATGATTACAAAACCATTTAAATCATTTAAAGATCAGGATNAGGAGCTA
gtctttttttcattattttattctGTTCCCTCTAGACAataataaaagaa
gaaaaatatacaGAAAGGGAAATATAAAAGATAACTAAagtgcaaccgat
atgaaccGAGAAAGCACACTTGAAGAAGCAATTCGTAATACCAGAAATTT
ATTGGGCGTTTCAATTAACCTCAGGAAGAAAAAGTTTGAACAATATCTTT
CAGATGCTACAAAACAATTCGAATAAGCGATAACACAATCAAAACATATT
TTAGAAACATCAATCACAATTGCAAGGAGATCACTTGAAGATGTCATTTC
ACAGTTGTCTTTAAATCCATCATTGACTCAGATCAATGCGAATTCTAAAA
GAGGTTTAAAGGAAGATGAACGCGAATTGAAAATTTCTAGACAAGAACGC
TCTTGTACTAGTGATAATCCAATTAATCACAACTACCTCAGCACCACTAT
AAAACAAGGGTTTGCAGATGATATTGATATTTCAACCACTGGTGATGACA
TTTCCTTTAGTCAACAACGCTGACCTGCTGAGAATTTTAAGTATACCCCA
CGTAATGATGAGACATCCCAAAAACAATATTTGGCAGACATTTCAATGCC
ATTATACAGTGAAGAAAACTCGCCCCTTAGTCAACACTGTCCAGCAAATG
AACTGCTAACTCCTTCAGTGGAACCTATAGGTCAGCAATCACAGACAAGC
TTGGACCATAATCGGGTACACATTGATTTGTTGTGCAACCTGCTACCAAA
TGTTATCGGTTTAGAATTCCGTCATAAAATGGTGCATCGCTTGAAAGATT
TACGGGAAGCTTACACAGTTGAAGACCTTCAAGCTAATGGCTCAGAAAAG
TTTAATTCAACCAGATTGGATAGTATTCTATTTTTCAATGGATTGGTTGA
ACATTTttgcaaagaaaataaaaacgaaTACAAGTCATTGTATGAATTGG
TGTGGTTTTCTTCGccttcctttgaaaatgaagTATTAGATGAAGTTGGT
TCAAATATCTTCCCAAGGAGTTCACTTCCCATAGAGAAGATGAAGAAATA
CCATGGCATGGAGATGAAAGGTACCATTCCATTAAAATATATCGTACAAT
TAGTACAATTAGAAGAGCATAAATTGTTGGATATACATTTATCAAAATTA
CCTAAGATGGCTGTTCGCACTGACTTCAGAGTAAGAATACTTAACTTACT
TCAAACATATCTTTTACAATTTCATTGTTGTGTGGTGATTTTTTCATTGG
AGATGCTTCAGATCCGGCGGAAGCAGTGAGACTGGGGAGACTCCCCATTG
TTGCGTAAATGAGATTTTTCCcctcaaattcctagcgaattttatctcat
tttgagagAGGAAGAATGTGATCTTTTAACAATATAGTGAACACAGATTC
TTTTCCTTCCCTTAGATAGTCTTAGTATTCGAG
Run BLAST on NCBI

protein sequence of TCONS_00059566-protein

>TCONS_00059566-protein ID=TCONS_00059566-protein|Name=TCONS_00059566-protein|organism=Clytia hemisphaerica|type=polypeptide|length=399bp
MDINLLPDEILEIIIAFSEKEDAKALSRTSKRMYNLTIERIWSKPRFYGK
RDHSFLTKITKFPIKELHTNDFNCLWSKICDIVSGLDLLHIDYNDNDETF
EDRLDDICEIAKPPIVLHTNALNMKYRDDFDLFLNGILGGACSIRKLIIN
PKFSSDERRNCAWSPKQLEMVSEKVFIEEILSSSLSITDFDELVKVLCKL
KGTRVNISETFNNQYILTVEDLDKLASNNIKVFKIDCVALEYGLSSDGLT
KFAPVLSKFQSLEEFSIRHAYCQDPIPIQLFIGLPLITLSTTQIRWEAGK
IAEIVKLLSEIKTLTHLDLIKSNHSDYKLSLADFELFKILPVVMFLELEA
LDLTKKNVPEFRNIMLEMKIEDIYWSSTGEYSNFDISLKSHGPDDYKTI
Run BLAST on NCBI

transcript from alignment at scaffold_329:817807..830109+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059566 ID=TCONS_00059566|Name=TCONS_00059566|organism=Clytia hemisphaerica|type=transcript|length=12303bp|location=Sequence derived from alignment at scaffold_329:817807..830109+ (Clytia hemisphaerica)
TAATATCGGTTTAGAATTCCGTCATAAAATGGTGCATCGCTTGAAAGATT
TACGGGAAGCTTACACAGTTGAAGAACTTCAAGCTAATGGCTCAGAAAAG
GTattgtttaatttttagttagggaattacatgtttttctttcataagCA
AAACGTTTATGAGAATATaaaggctcagtttttggtaccttaacaatggc
tctattgtttgagaacaatagaatgctaagcataatgcgagcctgatata
gggacagacacttgcttataaaaaaaatgtaagtgTTTATTCCTGAGAAA
ATGTTATTCTGTTTACAGCTAAGGGTAACATTTTATAAGCAGTTCACTAT
AATATTTGTAAACACGGCCAGTCttacattttcatcttaaaacaACTTTT
CTGAAGTGATTACTTACGGATTTGAGGCCAACAAATTGCTTGCACTTGCC
GAATTGGACTGGCAGAGTTGTGAAGTCTTTCAGGTTTCTCAGAGGATACT
CACTGTATAACAAAGAAGGAAAATTGTCTTTATGGAAGAATACAATCGAT
TTTGAAAAGGTGGCTCTTTATCCAAACCGAAtgatttttattagtttttt
tttcataaagggCGGGTGAATGTGACTAAGCCAAACCTGAAAGACTTCCA
GTAGCTTAGACAAGAGGAGCCACagtacattttatttttattttacgaat
gGATAAAAACAGTGTCATGAAAATCTgcacacaaattttgcgccccacTT
GTCTTCGCTTCTGAATTTTTATCCCCAGAACAAGTCAATTTTCTTTCCAT
TTCAGTTTAATTCAACCAGATTGGAAAGTATTCTATTTTTCAATGGATTG
GTTGAACATTTCTGCTAAGAAAATAAAATCGAGATGAAACTACATATTCC
AAACAAATACAAGTCATTGTATGAATGGATGTGTTTTACTTCGccttcct
ttgaaaatgaacTATTAGATGAAGTTGATTCAAAGATCTTCCCAAGGAGT
TCACTTCCCTTAGAGAAGATGAAGAAATACCATGGTCTTGAGATGAAAGG
TACCATTCCATTGAAATATATTGCATTGGTGAAGTGCAATTAGAAGAGCA
TAAATCGTTGGATAGACATTTATCACAGTTACCGAAAACGTTTGGTCGCA
CTGCCATGAGAGTAAGAATACTTTACCAACTTCAAATATATCTTATACGA
TTTCATTGTTGTGAGGTGATTTTCTCATTAGAGATGCTTCAGACCCGGTG
GAAGCAGTGAGACTGGGGAGACTCCCCATTGTTGCGTAAATGAGATTTTT
CCcctcaaattcctagcgaattttatctcattttgagccttcagcctgcT
CTCTCTTACAGGAGAGGAAGATTGTGATCTTTTAACAATATAGTGAACGC
AGGTTCTTTTCCTTCCCTTAGATAGTCTTAGTATTCATTCCAGTATTTCC
ATCAATGGTTTTTaccatacacgcttttttttataagaatacactttata
agaatgtccatgatgaaaatggccaaaaaattaagaatatgctaagaatc
accatcatggaattttgctactcaagctaagaatgctattgttagagcat
tttcaattataaattgtcaattacccccaagtaaggcccactcctttcac
aaaaatgccatgcTTGAGACGCATGTACTAAATGTTATATCTAGTCTGAA
TATTAGAACCATAACCtaagaatgctgtaagaatattttaggatgatttt
cccaaaaaagttaagaatatccatgatgaaatggatttacaccattctta
tataaaaaaaagcgtgtatcattGATTTTGTGGTTTTTGGGTTTGTTTTC
TCTAGTTTTTAGGTTCAAAACTTTCATTTGGAAAGGTGGATTTTGGTCTT
TAACAACAAAACTGTAATGCTTTTTTCATGTCTCTCCCTTTCAGATAGCC
CAAAAGAAGACTTTTGAGGTCTTTAACAATCAAATTGAAAGTTATTGTAA
TAAACGGGTTTTGAATATCCAGGAATTTGTTAAAAATATgagaaagaata
aagaaatcGAAATGGAAGATGTACTGTCTAATCAAGATACAGGACATACT
ATGgaatataataataatagtaataataatatACTAAGCCTTCAATTTGT
ATAGTCAGAATGTTTGTACAGATTTGTATGTCAGGTCTGCGGCTGAAATC
TTACTTTGTGTTTTACTGGAAAACGAAAATGGTGTCTTCACAATCAAGTC
TTCCAAAGGAGAATGGATCCTATATTTAGCAAACTAATTGAACTTAATTA
ATGatgaaatttgtgtttttgataTAATGAGGTAATCTCGTCGTTTTGAG
TTCTCGGTGTTAATTGAATGAAAACTAAcacatgaaaaaattttcgattt
ccaaggctggaaatttcaagttttcttagttggaaaaaagataaaatcca
atggaaaatccaacctggaaatgtgggacattctccaaggctggaaattt
caagttttcttagttggaaaaaagataaaatccaatggaaaatccaacct
ggaaatgtgggacattctccaaggttggaaattttgcattttccatggca
tagaattttcaaaaatttagttggaaaaaagccaaaatccaaatttaaca
aggctggaattttttaaaattcagttggaaaaaagccaaaatccaaattt
aacaaggctggaattttttaaaattcagttggaaaaaaagacaaaatcca
aatttaacaaggttggaattttcaaaaattcagttggaaaaaagccaaaa
tccaaatttaacaaggttggaattttttggccacttttttttctcaatgt
gTTCTTAGAGTATGTTTCAGTCAGatattttgatctgttctgattagagA
TTTGTAAATCATTCAGAAATGATTATGTGTTCTAAcgcgagacaggggta
taatcaaggttATCTAGCGCGATCTTGTTGCCTAGCAACCCAAGTAAGTT
TCAAAACACATCTTTTGTGGAAAATAACGAACATCTTGCGAGTACTCtct
ggtacctaatagccggggggtttggaataagcaaagggattggaaaaaat
ctcaacacTTGATAAGCGGGAAGGAGGGGGTGGCAATAAAAATGTCgtag
gtggaaaattttcaaaaaggagGGTAATATATGGAATGCCATAGCTGCTA
TAAGTGCACTTTACGCAAGAcctcttttttcaatttccaatggaaatttg
aaagGGACTttgccaaaaaatatttttgaaccaAACTTAAAAAGTCAAGT
AACtacttttcatatttttactgGTATCAAAGAAGTGCTAATAATGCTTA
TTTTAACCGATATGCTTAATTTGGCagttaaaaaggaaaaaatcgtTAAA
ATGTAATTTCTCAATAGTGTCATCcgtgaaattaaatccccgtGAAATGA
TAAAATGTCGCGGATAAGTTCAACCGCGAAGTTTAATCCCTGCGTAAATT
TATCCGTTTAAAGTAACAGTCTTTCAATGTTTTCAAGTCCTAACATCATA
AATCTCGGGATATTCTTTGGATCTTAAGCATTCTAAACCTTATTCTGTTT
TCTTAACTAGATAAACAACAAAAGAATTACGTAAACAAAAGACCAATTGT
GTTCAAAGAATCAAGCTCAAATGGATATCAATTTATTACCAGATGANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTGTAGGGATTCTCATGCTTGGTTGAGTTACGTAATT
TCGGTCATTATGGGAGCAAACATTCGAataggctcttccagaaaatggaA
AGATATATTGGATATATGGTCcggaaaatagtcaaaaaattcaaaatttg
ccttgattGGGGGCAAAACTGCTCTGTTTAGGGGTATTTATGAATGTCCG
GTGGTCAAAAGTCTCAATGTCCAATCTGTAGATGCATTCCTTACACAATT
CGTATGTTGGCTTcgataatggcggaaattacgtaacatGAAAATCTCTC
TGCGCAACGGTACTATATTTAAATGGACGTCCTTCTTTTCAAGATGCATC
CTTAAGATTAAGGACGATTTTCCCACTGATTATTACCAATCTATTTTCCG
TAAACGTTGATTTACTTTAATGGGACGAATTTCTGCAGGGAATAAATTTC
GCGGGCTTTGCAAAAAGGCCTTTccaaggaaatatttttgaagaaaactt
aAAAACTCAAGTAACTATACTTTACATATTGTTTACTGGTAAAAAAGCAG
TGCTAATAATCCTTTTTTCGATAACCGACATGCTTAATTTGGCAGTTAAA
AGGCAaaaaaccatgaaaatattATCTCTCAATAGTGTCATCcgtgaaat
taagtccccgtgaaatgaaaaaaattcgcaGATAAGTTTAACAGCGAagt
ttaatccccgcgaaaatttattcttttaaagTAACAgtctttcaagtttt
tcaagttCTTACAGGGCTcaaaataacggtcggacattggacattgtccg
acccaaatagcttcatgtccgacccaaaaatcataattttcaagctaaag
caaccctgatcggacattttgtcccacccacttgaaatcgttatttcgag
ccttatCATAAATCTCGGGATATTCTTTGGATCTTAAACATTCTAAACCT
TACTGTCTTTTCTTCACTAgataaacaacaacaaaaaaaaaacacgtaaa
CAAAAGTGTTCAAAGAATCAAGCTCAAATGGATATCAATTTATTACCAGA
TGAGATACTAGAAATAATCATTGCGTTCTCGGAAAAGGAAGATGCAAAAG
CTTTATCACGAACATCAAAAAGAATGTATAATCTTACTATTGAACGAATT
NAAGCTTTATCACGAACATCAAAAAGAATGTATATTCTTACTATAGAACG
AATTTGGTCAAAACCAAGATTTTATGGGAAACGAAATCATTCCTTCTTGT
CAAAAATAACGAAATTTCCTATTAAAGAATTGCATACAAATGAGTTTAAT
TGTCTTTGGTCTAATATTTGTGATATCGTTTCTGGGCTTGAGTTAATACA
TATTGATAATAACAACAATAATGCAACCTTTAAAGACAGATTAGACGATA
TTTGTGAAATTGCAAAACCATCAATTGTTCTGCACACAAATGCCCTTAAT
ATGAAATACAGAGACgactttgatttgtttttgaaagaaattctcGGCGG
TGCTTGTTCGATACGAAAGTTGATAATCAATCACAAGTTTAGTAGTGATG
AAAGAAGAAACTGTGCTTGGTCACCTAAACAACTTGAAATGGtcaatgaa
aaagttttcattgaGGAACTTTTGTTGAGTTGTTTATCGATCACTGATTT
TGATGAGCTTCTTAAAGTTTTGTGTAAACTTAAAGGAACACGTGTCAACA
TTTCCAAAACAAGCTTCAATAACCAATATCTTTTAACTGTTGAAGATTTG
GATAAACTTGCAACGAATAacataaaagttttcaaaattgattgTGTTGC
CCTTGNNNNNNNNNNNNNNNNNNTGCTCctgtaatttcaaaatttcaatc
tttGGAAGATTTTAACATTCGTCATGCTTACTGCAAAGATCCAATACCTA
TTCAGTTATTTACCGATTTACCGATAATTATACGCTTTCTACAGCACAGA
TTTGTTGGGAAGCTGGTAAAATTGCTGAGattgttaaaatattatctGAA
ATCAAAACCCTGACTGATTTAGACTTGGAGGTAAATAATCATTCAGATTA
TAAACTTTCCCTTGCGGATTTTGAACgtttcaaaattttaccaaTAGTCA
TGTGTTTGGACTTGGATGCTTTAGATTTGACAAAGGAAAACGTTCCAGAA
TTTCGTAAAATCATGCTTgagatgaaaattgaagatatATACTGGTCTTC
TACGGGTGAATATtcgaattttgatatttctctaAAATCACATGGACCAG
ATGATTACAAAACCATTTAAATCATTTAAAGATCAGGANNNNNNNNNNNN
NNNNNNNNNNNGAAGATATTTACTGGTCTTCTACGGGTGAATATtcgaat
tttgatatttctctaAAATCACATGGACCAGATGATTACAAAACCATTTA
AATCATTTAAAGATCAGGATACAGTATGCCATACTTATAAGGGNATATTT
ACTGGTCTTCTACGGGTGAATATtcgaattttgatatttctctaAAATCA
CATGGACCAGATGATTACAAAACCATTTAAATCATTTAAAGATCAGGATA
CAGTATGCCATGCTGATAAGGACGGTATGCATAAACCTGCCACCCAAATC
TTccgagtgaatatagttggacagaagtttttatttctttaatttttatt
ttatttcactgatgattggtgcctgagcaccatgaaactctgagtttgaa
acatagatattgtgtcaactctttattaaatttctttaaatatagataac
ctccaagcagctcttcgtgctccacacattccacgcatgcgctctaaagg
gaatggttctgcaagaagacctgcgaaggttctcgggttttctttgatgg
ccgacactctgaaatttcagagtactTTTCACGATTCAATCGCGGGCATT
CGCATAGAATTTATCGATTTACTCGGGCCGTCTTTGGATGCGTGGGCTAA
AGAAAACCGATTCTACTGCGACCGTGGCTTTCTTGCTCCGAACCAAATTT
CAAGATGGCGCCTGAAATTCACGTTTTGGCTAttggtcaatgttttgatt
ttttttatggaTTCTGAGACTTATAAAGGAAAGTTCAATGTTCCAaatgt
tgtttatttattttagtgtAGCTCTGACATACACCCACAGAANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCCTT
TTAAAGTAACAGtctttcaaggttttcaagtcCTAACATCATAAATCTCG
GGATATTCTTTGGATCTTAAACATTCTAAACCTTGTTCTCTTTCCTTAAC
TAgataaacaacaacaacaaaagaattACGTAAACAAAAGACCAATTGTG
TTCAAAGAATCAAGTTCAAATGGATATCAATTTATTACCAGATGAGATAC
TAGAAATAATCATTGCGTTCTCGGAAAAGGAAGATGCAAAAGCTTTATCA
CGAACATCAAAAAGAATGTATAATCTTACTATTGAACGAATTNCATTGCG
TTCTCGGAAAAGGAAGATGCTAAAGCTTTATCACAAACATCAAAAAGAAT
GTATAATCTTACTATTGAACGAATTTGGTCAAAACCAAGATTTTATGGGA
AACGAGATCATTCTTTCTTGACAAAAATAACGAAATTTCCGATTAAAGAG
TTGCATACAAACGATTTTAATTGTCTTTGGTCCAAAATTTGTGATATCGT
TTCTGGACTTGACTTATTACATATTGATTATAACGACAATGATGAAACCT
TTGAAGACAGATTAGACGATATTTGTGAAATTGCAAAACCACCAATTGTT
CTGCACACAAATGCCCTTAATATGAAATACAGAGACgactttgatttgtt
tttgaacGGAATTCTCGGCGGTGCTTGTTCGATACGAAAGTTGATAATCA
ATCCCAAGTTTAGTAGCGATGAAAGAAGAAACTGTGCTTGGTCACCTAAA
CAACTTGAAATGGTCagtgaaaaagttttcattgaGGAAATTTTGTCGAG
TTCTTTATCGATCACTGATTTTGATGAGCTTGTTAAAGTTTTGTGTAAAC
TTAAAGGAACACGTGTCAATATTTCTGAAACGTTCAATAACCAATATATT
TTAACTGTTGAAGATTTGGATAAACTTGCATCGAATAACATAAAAGTTTT
CAAGATTGATTGTGTTGCCCTTGAATATGGTTTGTCGAGTGATGGCCTTA
CAAAGTTTGCTCCtgtactttcaaaatttcaatctttGGAAGAGTTTAGC
ATTCGTCATGCTTACTGCCAAGATCCAATACCTATTCAGTTATTTATTGG
TTTACCGCTAATTACGCTTTCTACAACACAGATTCGTTGGGAAGCTGGTA
AAATTGCTGAGATTGTTAAATTATTATCTGAAATCAAAACCCTGACCCAT
TTAGACTTAATAAAAAGTAATCATTCAGATTATAAACTTTCCCTTGCGga
ttttgaacttttcaaaattttaccagTAGTAATGTTTTTGGAGTTGGAAG
CTTTAGATTTGACAAAGAAAAACGTTCCAGAATTTCGTAACATCATGCTT
gagatgaaaattgaagatattTACTGGTCTTCTACGGGTGAATATtcgaa
ttttgatatttctctaAAATCACATGGACCAGATGATTACAAAACCATTT
AAATCATTTAAAGATCAGGATNAGGAGCTAgtctttttttcattatttta
ttctGTTCCCTCTAGACAataataaaagaagaaaaatatacaGAAAGGGA
AATATAAAAGATAACTAAagtgcaaccgatatgaaccGAGAAAGCACACT
TGAAGAAGCAATTCGTAATACCAGAAATTTATTGGGCGTTTCAATTAACC
TCAGGAAGAAAAAGTTTGAACAATATCTTTCAGATGCTACAAAACAATTC
GAATAAGCGATAACACAATCAAAACATATTTTAGAAACATCAATCACAAT
TGCAAGGAGATCACTTGAAGATGTCATTTCACAGTTGTCTTTAAATCCAT
CATTGACTCAGATCAATGCGAATTCTAAAAGAGGTTTAAAGGAAGATGAA
CGCGAATTGAAAATTTCTAGACAAGAACGCTCTTGTACTAGTGATAATCC
AATTAATCACAACTACCTCAGCACCACTATAAAACAAGGGTTTGCAGATG
ATATTGATATTTCAACCACTGGTGATGACATTTCCTTTAGTCAACAACGC
TGACCTGCTGAGAATTTTAAGTATACCCCACGTAATGATGAGACATCCCA
AAAACAATATTTGGCAGACATTTCAATGCCATTATACAGTGAAGAAAACT
CGCCCCTTAGTCAACACTGTCCAGCAAATGAACTGCTAACTCCTTCAGTG
GAACCTATAGGTCAGCAATCACAGACAAGCTTGGACCATAATCGGGTACA
CATTGATTTGTTGTGCAACCTGCTACCAAATGTTATCGGTTTAGAATTCC
GTCATAAAATGGTGCATCGCTTGAAAGATTTACGGGAAGCTTACACAGTT
GAAGACCTTCAAGCTAATGGCTCAGAAAAGGTattgtttaatttttagtt
agggaattacatgtttttttcttttataagcaaaacatttataagcatat
gaaggctcagtttttggtaccttaacaatggctctattgtttgagaacaa
tagaatgctaagcataatgcctGATATAGAAGCAGACACTTATAAAATAC
ACGTAAGTGTTTATTCTTGAGAAATGTTATTCTGTTTGTTACATCATGGG
TAACGTTTTATGTGCAGTACACTATAATATTTGTAAACACACCTAGTTTT
ATATTTTGATCTCAGAATGATTTTTATGAAGTGATTACGGATTTGAGGCC
AACAAATTGGTTTGCACTTGCCGATTTCTTACTAGTTGTTAAGTAGAAGT
CTACCAGGTTCATCAAGGGAggcgtccacatagtacgtacgcactaaagg
GGGGAGTCATCttaaaagcgtatgcttgcgtacggaaatgtacgtacgca
gagaaaatcttttcatagcccttttttgcttgttttttgtcgatttttac
gCTTCTtttacgcatcaaggaaaaaaaaagtttcttaataaaaattgagt
ttcatgtatgaattaaaggtccgaaccaaacgatttgaattcgaaatttt
cttcaaccgaggggggtTGTGGatgaaaagtacgtacttaccaggggggg
ggtaaagccatttgcgtacgcttgcgtacagggggtatccgattttcgac
attttagtgcgtacgtactatgtggacgccCCAAGGATACTTATAACAAA
GAAAGGAAATTTGTTATTATGGAAGAATACAATCGATTTTGAAAAGGTGA
CTCTTTATCCACTCACTCCCAGTTTTTAGGGTTTTATATGAGACCTTTTA
GATGCTAATTTGAAGAAAGACCTTATCAGTCTGAATTCAAACCTTTTAGA
TTTAGTTTTGAGACCTTAGCCGGTTATGATTTTATTTGTCTCTTTTTTTC
TCATAGAGGGCGGGGGAATGCCAAACCTGAAAGACTTCCAGCAGCGTAGA
CAAGATAGAGGGCGCAAAATAACCACAGTATATTATCTTattattatcaa
attttgcgcccctcttgtctacgctactgaatGTTTTCCTCAGAACAATT
CAATTTTCGTTCCATTTCAGTTTAATTCAACCAGATTGGATAGTATTCTA
TTTTTCAATGGATTGGTTGAACATTTttgcaaagaaaataaaaacgaaTA
CAAGTCATTGTATGAATTGGTGTGGTTTTCTTCGccttcctttgaaaatg
aagTATTAGATGAAGTTGGTTCAAATATCTTCCCAAGGAGTTCACTTCCC
ATAGAGAAGATGAAGAAATACCATGGCATGGAGATGAAAGGTACCATTCC
ATTAAAATATATCGTACAATTAGTACAATTAGAAGAGCATAAATTGTTGG
ATATACATTTATCAAAATTACCTAAGATGGCTGTTCGCACTGACTTCAGA
GTAAGAATACTTAACTTACTTCAAACATATCTTTTACAATTTCATTGTTG
TGTGGTGATTTTTTCATTGGAGATGCTTCAGATCCGGCGGAAGCAGTGAG
ACTGGGGAGACTCCCCATTGTTGCGTAAATGAGATTTTTCCcctcaaatt
cctagcgaattttatctcattttgagagAGGAAGAATGTGATCTTTTAAC
AATATAGTGAACACAGATTCTTTTCCTTCCCTTAGATAGTCTTAGTATTC
GAG

Coding sequence (CDS) from alignment at scaffold_329:817807..830109+

>TCONS_00059566 ID=TCONS_00059566|Name=TCONS_00059566|organism=Clytia hemisphaerica|type=CDS|length=2400bp|location=Sequence derived from alignment at scaffold_329:817807..830109+ (Clytia hemisphaerica)
ATGGATATCAATTTATTACCAGATGAGATACTAGAAATAATCATTGCGTT
CTCGGAAAAGGAAGATGCAAAAGCTTTATCACGAACATCAAAAAGAATGT
ATAATCTTACTATTGAACGAATTTGGTCAAAACCAAGATTTTATGGGAAA
CGAGATCATTCTTTCTTGACAAAAATAACGAAATTTCCGATTAAAGAGTT
GCATACAAACGATTTTAATTGTCTTTGGTCCAAAATTTGTGATATCGTTT
CTGGACTTGACTTATTACATATTGATTATAACGACAATGATGAAACCTTT
GAAGACAGATTAGACGATATTTGTGAAATTGCAAAACCACCAATTGTTCT
GCACACAAATGCCCTTAATATGAAATACAGAGACgactttgatttgtttt
tgaacGGAATTCTCGGCGGTGCTTGTTCGATACGAAAGTTGATAATCAAT
CCCAAGTTTAGTAGCGATGAAAGAAGAAACTGTGCTTGGTCACCTAAACA
ACTTGAAATGGTCagtgaaaaagttttcattgaGGAAATTTTGTCGAGTT
CTTTATCGATCACTGATTTTGATGAGCTTGTTAAAGTTTTGTGTAAACTT
AAAGGAACACGTGTCAATATTTCTGAAACGTTCAATAACCAATATATTTT
AACTGTTGAAGATTTGGATAAACTTGCATCGAATAACATAAAAGTTTTCA
AGATTGATTGTGTTGCCCTTGAATATGGTTTGTCGAGTGATGGCCTTACA
AAGTTTGCTCCtgtactttcaaaatttcaatctttGGAAGAGTTTAGCAT
TCGTCATGCTTACTGCCAAGATCCAATACCTATTCAGTTATTTATTGGTT
TACCGCTAATTACGCTTTCTACAACACAGATTCGTTGGGAAGCTGGTAAA
ATTGCTGAGATTGTTAAATTATTATCTGAAATCAAAACCCTGACCCATTT
AGACTTAATAAAAAGTAATCATTCAGATTATAAACTTTCCCTTGCGgatt
ttgaacttttcaaaattttaccagTAGTAATGTTTTTGGAGTTGGAAGCT
TTAGATTTGACAAAGAAAAACGTTCCAGAATTTCGTAACATCATGCTTga
gatgaaaattgaagatattTACTGGTCTTCTACGGGTGAATATtcgaatt
ttgatatttctctaAAATCACATGGACCAGATGATTACAAAACCATTTAA
ATGGATATCAATTTATTACCAGATGAGATACTAGAAATAATCATTGCGTT
CTCGGAAAAGGAAGATGCAAAAGCTTTATCACGAACATCAAAAAGAATGT
ATAATCTTACTATTGAACGAATTTGGTCAAAACCAAGATTTTATGGGAAA
CGAGATCATTCTTTCTTGACAAAAATAACGAAATTTCCGATTAAAGAGTT
GCATACAAACGATTTTAATTGTCTTTGGTCCAAAATTTGTGATATCGTTT
CTGGACTTGACTTATTACATATTGATTATAACGACAATGATGAAACCTTT
GAAGACAGATTAGACGATATTTGTGAAATTGCAAAACCACCAATTGTTCT
GCACACAAATGCCCTTAATATGAAATACAGAGACgactttgatttgtttt
tgaacGGAATTCTCGGCGGTGCTTGTTCGATACGAAAGTTGATAATCAAT
CCCAAGTTTAGTAGCGATGAAAGAAGAAACTGTGCTTGGTCACCTAAACA
ACTTGAAATGGTCagtgaaaaagttttcattgaGGAAATTTTGTCGAGTT
CTTTATCGATCACTGATTTTGATGAGCTTGTTAAAGTTTTGTGTAAACTT
AAAGGAACACGTGTCAATATTTCTGAAACGTTCAATAACCAATATATTTT
AACTGTTGAAGATTTGGATAAACTTGCATCGAATAACATAAAAGTTTTCA
AGATTGATTGTGTTGCCCTTGAATATGGTTTGTCGAGTGATGGCCTTACA
AAGTTTGCTCCtgtactttcaaaatttcaatctttGGAAGAGTTTAGCAT
TCGTCATGCTTACTGCCAAGATCCAATACCTATTCAGTTATTTATTGGTT
TACCGCTAATTACGCTTTCTACAACACAGATTCGTTGGGAAGCTGGTAAA
ATTGCTGAGATTGTTAAATTATTATCTGAAATCAAAACCCTGACCCATTT
AGACTTAATAAAAAGTAATCATTCAGATTATAAACTTTCCCTTGCGgatt
ttgaacttttcaaaattttaccagTAGTAATGTTTTTGGAGTTGGAAGCT
TTAGATTTGACAAAGAAAAACGTTCCAGAATTTCGTAACATCATGCTTga
gatgaaaattgaagatattTACTGGTCTTCTACGGGTGAATATtcgaatt
ttgatatttctctaAAATCACATGGACCAGATGATTACAAAACCATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037478XLOC_037478Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059566-proteinTCONS_00059566-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059566-exon-scaffold_329-1491911889:817807..817906TCONS_00059566-exon-scaffold_329-1491911889:817807..817906Clytia hemisphaericaexon
TCONS_00059566-exon-scaffold_329-1510915933:817807..817906TCONS_00059566-exon-scaffold_329-1510915933:817807..817906Clytia hemisphaericaexon
TCONS_00059566-exon-scaffold_329-1575043694:817807..817906TCONS_00059566-exon-scaffold_329-1575043694:817807..817906Clytia hemisphaericaexon
TCONS_00059566-exon-scaffold_329-1491911889:818612..818967TCONS_00059566-exon-scaffold_329-1491911889:818612..818967Clytia hemisphaericaexon
TCONS_00059566-exon-scaffold_329-1510915933:818612..818967TCONS_00059566-exon-scaffold_329-1510915933:818612..818967Clytia hemisphaericaexon
TCONS_00059566-exon-scaffold_329-1575043694:818612..818967TCONS_00059566-exon-scaffold_329-1575043694:818612..818967Clytia hemisphaericaexon
TCONS_00059566-exon-scaffold_329-1491911889:826160..826311TCONS_00059566-exon-scaffold_329-1491911889:826160..826311Clytia hemisphaericaexon
TCONS_00059566-exon-scaffold_329-1510915933:826160..826311TCONS_00059566-exon-scaffold_329-1510915933:826160..826311Clytia hemisphaericaexon
TCONS_00059566-exon-scaffold_329-1575043694:826160..826311TCONS_00059566-exon-scaffold_329-1575043694:826160..826311Clytia hemisphaericaexon
TCONS_00059566-exon-scaffold_329-1491911889:826395..828386TCONS_00059566-exon-scaffold_329-1491911889:826395..828386Clytia hemisphaericaexon
TCONS_00059566-exon-scaffold_329-1510915933:826395..828386TCONS_00059566-exon-scaffold_329-1510915933:826395..828386Clytia hemisphaericaexon
TCONS_00059566-exon-scaffold_329-1575043694:826395..828386TCONS_00059566-exon-scaffold_329-1575043694:826395..828386Clytia hemisphaericaexon
TCONS_00059566-exon-scaffold_329-1491911889:829527..830109TCONS_00059566-exon-scaffold_329-1491911889:829527..830109Clytia hemisphaericaexon
TCONS_00059566-exon-scaffold_329-1510915933:829527..830109TCONS_00059566-exon-scaffold_329-1510915933:829527..830109Clytia hemisphaericaexon
TCONS_00059566-exon-scaffold_329-1575043694:829527..830109TCONS_00059566-exon-scaffold_329-1575043694:829527..830109Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_329supercontigscaffold_329:817807..830109 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.54481	2.10905	0.507365	0	0.640982	0.0667866	0.483815	0.728383	0.540851	0.167049	0	0	0.687655	0	0.636493	0.985953	0.234442	0.567101	0.259825	0.404839	0.741904	0.831036	1.38211	1.5739	0.808288	0.754521	0.420143	0.385782	0.461172	0.697279
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032675L_dom-like
IPR001810F-box_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059566 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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