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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059553 ID=TCONS_00059553|Name=TCONS_00059553|organism=Clytia hemisphaerica|type=transcript|length=727bp
CAAGCAAAATCGAAAGCAAACAATAAAACTTCATCGTCTGTCGTAAGACT
GGTGTATTCCAAACAATCATACAACAATTACCGAAAAGAAGCTGAACAGT
TGTTAAATCAATTACCATTCCCTGCTCGTTACGAACTAGTCGATGATGAC
ACATCACAAAACGAAAGTCTTGATGAAGATATGGATTTGATAGCTGATCT
CTTGGATGCATACGATTTAGAATCTACTTCAATAACATCCAATATTTCTA
ATTTTAATGACCAAGACGCTGAAGCTCTGAGAGAATATCtggaaaaattg
aaacagaatTTATGATGAGTTCTTGAACCTTCAATAATTAGTTCaaacag
tttttttgttttgtttttcgctACCATTTCTAATTTTAATGACCAAGACG
CAGAAACTCTGTGAGAGAATATCtggaaaaattgaaacagaatCCATGAT
GAGGTTCTGCTGGTTGAAAGCTTTCAAATACAGTTGTCTCTCTCTaaatc
gatcttcaagggactaaAAACtgtattcgaattagagaaagtttaGTAAT
GAAAATCACTTctcagctgaggggaccaatatttagttcgaattatagaa
agaatcgaataatagagattcgaattagaaagagttGACTTTATTACTTT
TGTTGTAACCTTTCAATATTcgggattttcaaaaaattagtaTTTGCATG
AATACGTCTGTGTCTTTTGCATTAAGg Run BLAST on NCBI transcript from alignment at scaffold_329:721033..722128+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059553 ID=TCONS_00059553|Name=TCONS_00059553|organism=Clytia hemisphaerica|type=transcript|length=1096bp|location=Sequence derived from alignment at scaffold_329:721033..722128+ (Clytia hemisphaerica)
CAAGCAAAATCGAAAGCAAACAATAAAACTTCATCGTCTGTCGTAAGGTA
CGCAAGGTAAACATTTCCTTCGAAAAAAACTTGCCTGAAAATTCATCTCT
TTGAACTCAACGACCAAGATAGCTTAAATCTTAAGCTTTCTTGGCTCAAG
CAAAAAGCGAAGATATCCAATGCTATGAGAAAAGTAATATTTGATAAGGA
GGGGTTTATTCAGTTTAACTGTTTATTGGAAAAATAGATTAACGACCAAG
ATAGATTTAGATCTTAAGCTTTCTTGGCtcaagcaaaaaagtgaaaaatg
cttCCAATGCTAAAAATGATTAtgagaaaatcaatatttgatgAGGAGGG
GTTGATTCAGTTTAACTGTTTATTGGAAAAATAGattatttatattttga
ttGCCTTCATCTTCAGACTGGTGTATTCCAAACAATCATACAACAATTAC
CGAAAAGAAGCTGAACAGTTGTTAAATCAATTACCATTCCCTGCTCGTTA
CGAACTAGTCGATGATGACACATCACAAAACGAAAGTCTTGATGAAGATA
TGGATTTGATAGCTGATCTCTTGGATGCATACGATTTAGAATCTACTTCA
ATAACATCCAATATTTCTAATTTTAATGACCAAGACGCTGAAGCTCTGAG
AGAATATCtggaaaaattgaaacagaatTTATGATGAGTTCTTGAACCTT
CAATAATTAGTTCaaacagtttttttgttttgtttttcgctACCATTTCT
AATTTTAATGACCAAGACGCAGAAACTCTGTGAGAGAATATCtggaaaaa
ttgaaacagaatCCATGATGAGGTTCTGCTGGTTGAAAGCTTTCAAATAC
AGTTGTCTCTCTCTaaatcgatcttcaagggactaaAAACtgtattcgaa
ttagagaaagtttaGTAATGAAAATCACTTctcagctgaggggaccaata
tttagttcgaattatagaaagaatcgaataatagagattcgaattagaaa
gagttGACTTTATTACTTTTGTTGTAACCTTTCAATATTcgggattttca
aaaaattagtaTTTGCATGAATACGTCTGTGTCTTTTGCATTAAGg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059553-exon-scaffold_329-1491911889:721033..721079 | TCONS_00059553-exon-scaffold_329-1491911889:721033..721079 | Clytia hemisphaerica | exon |
| TCONS_00059553-exon-scaffold_329-1510915933:721033..721079 | TCONS_00059553-exon-scaffold_329-1510915933:721033..721079 | Clytia hemisphaerica | exon |
| TCONS_00059553-exon-scaffold_329-1575043694:721033..721079 | TCONS_00059553-exon-scaffold_329-1575043694:721033..721079 | Clytia hemisphaerica | exon |
| TCONS_00059553-exon-scaffold_329-1491911889:721449..722128 | TCONS_00059553-exon-scaffold_329-1491911889:721449..722128 | Clytia hemisphaerica | exon |
| TCONS_00059553-exon-scaffold_329-1510915933:721449..722128 | TCONS_00059553-exon-scaffold_329-1510915933:721449..722128 | Clytia hemisphaerica | exon |
| TCONS_00059553-exon-scaffold_329-1575043694:721449..722128 | TCONS_00059553-exon-scaffold_329-1575043694:721449..722128 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:721033..722128 + |
Blast
The following BLAST results are available for this feature:
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