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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059508 ID=TCONS_00059508|Name=TCONS_00059508|organism=Clytia hemisphaerica|type=transcript|length=557bp
aaaaatttattggtaTTGCCATATTGTTATTATTGggattttatcatatt
ttttacACTGGTGCTAATGTTGATTTGACTCTATTCAAAACTTCCAAAGC
AATAAAAAATGTGAAGTTCGTTGAAAAAGAACGAATACACGAGTCATACA
AGGCAAAAAAGAAGATTGTTAATGAAGTTGCTGCAAAGAAAGGTACGGTC
GATCGAGCACCGACAAGTCTTCATGATTCACTTGTGTTCCCTTCAACTGC
AAATGATTTTACTTCAAAATTAGAATACGCTTATTCAAAGAGTGGACAAG
ACTTGAAAGTCTTACAAAAAGAAGTAGAAGAAAGACGATCGAAGCTTGTA
CGTAGTCCACTTTACGGCGAAGATCAATCGTGTAAGAATAATAATCGAAT
CGCTGGACTTACCAAATTGTTTGATGCATGGGCACATATGGCAAAATTGT
TTAATATTCGATATTTTATCGTATATGGATCGCTGATCGGAGCGGAGAGA
GATCGTAACATCGTCCCGTATGATTTAGACGACGACGTTATGATGTCAGA
AGATGAG Run BLAST on NCBI transcript from alignment at scaffold_329:180007..190830+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059508 ID=TCONS_00059508|Name=TCONS_00059508|organism=Clytia hemisphaerica|type=transcript|length=10824bp|location=Sequence derived from alignment at scaffold_329:180007..190830+ (Clytia hemisphaerica)
aaaaatttattggtaTTGCCATATTGTTATTATTGggattttatcatatt
ttttacACTGGTGCTAATGTTGATTTGACTCTATTCAAAACTTCCAAAGC
AATAAAAAATGTGAAGTTCGTTGAAAAAGAACGAATACACGAGTCATACA
AGGCAAAAAAGAAGATTGTTAATGAAGTTGCTGCAAAGAAAGGTATATTA
TGATGAATTTATAACAATATTTCACGACTCATAAATCATCTAGTAGGTCT
ACAGTATTCTACAGTAtctttttgactttcttttgacttttctcaaactt
tcattttcactttttcccGACAAAAACGGCCATCGCCCTCGGGCGCCCAA
TATTTTCCAACGAAGTTTTTCCAAAAACGCCCACCGCCCATAGattttgc
tccacccatccgccTATTCAAGaatctttttgactttttcaagactattt
ttttactttaatttgacttttttgacttttttgactttttgtagaggtgt
acGATAGTTTTTCAAGTGCTTTGCCCGGGGGtgtcattttcttgaaaatc
ctTGTCCATTTTGAAGCACAGAttggtcagattttccaaagtTTGACCCG
AAAACTccgtttttctcattttttacgCCCTTAGAGTGTACTTTCTCGCA
TTTCAACTCGTACAGTGTACTTTGGCAAACCTTAAAAACGCATATTGAAC
AATTCAGTTACTTCAAGCGTATTTTACTTTATTCTCTCTTTTTGTACCCG
AGTAGGCTCATAACACGAGGTTTCGTGGAATTAATGATGTTTAAACCCAA
ATCTGTTAAAGAAGTTTGTTTTAATCCAATTACGTGCTGCATACTGTACC
GTGGCTGATCAATACGTCTATTATATGCTATGAGGATACTATAGTACATA
AGTTGGCCGTCCTACGTAAATTTACTACATGACAAACTCTCCTGGGAGAT
TTTTAAACTACCAACCGAGAGTTCAAATTACCAGGCGAGAGTTTAGACAT
CCGGCCGGTAGTTTTAAATTATCGGCCGGTAATTTGAACTCTCGGCCGGT
AGTTTGAAACTCTCGGCCGGACGTTTAAGACACGCGACCGGACGTTTAAA
ACAGAACACAAACACACTTGTCTAAATCAGCCACAGTAATACTGTGTAGG
AAaaacaaccaaccaaatcaTATAGGAGCTTGTTAAAACTCCAGTTTGTC
CCAAATCTCTATAGATTTGTCTCCACTAAACCATCTTGActgctcaaaaa
aaaaaaactttgtgaCTCTTTGTGAAATACGCTTTTAAAGTCtctccaga
tataattggcagtggaaacaagaatgcctgtaacttttgatagtcaaata
taaatataaaatacGCTTTTGGAATTGAAACAAGGGATGTAAACGTCCTT
TATCCCGTCATATCTCCGCATCAAATTAGAAATacctttaagggaactaa
tttttgcgggaactaaattttgcggttaTTGCAGATTTAGGCCCAAACCG
TAAAATTTAGTTcccacaaaatttttcaaatgcaaaaaacaaaggtcgaa
taattcacagtacggctttaattttctttctagtgagaaatccgcaaaat
taagttcccgcaaatattaaatattaaatcttgaactgcgaaccgcaaaa
attagttcccgcaaaaaatagttcccttaaggttTTGAGCGGTCGAGGTG
GTTTTGTGCCCAACAAAATAAGAGGATACCTAGGTGAAACTTTAAAGGCG
AACGAAACGAAATTAGACACCCGGGgagcaaaatactaaaaaatcaTGGT
TTTTTTGTGGTGTTTTGGTCAATTTCTCCCTAATAGATTTAGCTTCTATG
ATAAAATTTTCGGGTATCTTTAATTTCAGTCTTTCATCTGtctatctaag
aaaaaattatatcGAAATCATTTATGAAAGAAAAGTTATCAgcgattgaa
aaaaaagttaaaatcgtAATTCTGCACAAGAGCAAAACTCACTTAAGAAA
ACTGAGAATGCACGCTGACAGGAAAAACATTTAGATTTTGACCGTGTTAT
ATGCGTTGAAATGACACTATTTCAGACTAACTTTGCCCAGAAACGAAGCT
ATTGAAAGTATGAACCGTGATGTTGTAGAAAATTAGTGCAATTAGAGTAA
TTCCATTACTTTTGGCACCTATTTTAACTTTATCAGATCGCCTTTTAGAT
CTTTTAACGACCCatttcgaaattttaagcaatgaCATTTAGGGTGGGTT
TACATCTGTAGGGGAGAATCGATTAACAACacacaaaaaaactcaaaatc
acTTTTACGAATTCTTTTATAAACATATCGATCTCGTTATTGCCATTGTT
ACAAAAGGTAGGTTTGGGTACCTCTAAAGACAAAGGACGTAACGATGAGA
AAATCCattaagttttaaaaataaattgtgtaaagaaattttccaattcC
TTTTAAATGAGTAAATAATTGGAAAATGATTTCGATGACGATGATGACAA
CTACGCAAATGACTTTTTCAATAAAGCGTTACTATGCAACAtggtggttt
ttcactgagactgtctggcgaaaatcgattagctgaaacaaagaaaattg
ataggaaagcattactgactcccaaaacagttgtctaagcgtttacaacc
ctttgaatttgaagaaaattttattaaaaatcatcagCTCGCATATCAAA
ggatttagaattacagccttctaatgaacattttctgtgacaagattcct
cgtcttttcTATCAAATCCATACAcatgaaagtttgctcttcgactctat
cggggaaaaaaaaacttttcccatacgaccaattttttacaaaagaatcc
cactgcacattctgctacttttatgaCAATCAATTTATTTATGCTGTCTT
TTTtgcttaattggtcattaagccaagagaggtctatccctctcttggag
aacaaaaggtttaatgaccaattttcgacgttaaatctggaatgctgata
tgaagcgaTCAAAATCTGATGTTAAGCACGAATCCtcattgtatattttt
tacaacccttagaaatttatgaaaaggaccgttgatgagaaccacttatc
tatctagcgtagtgaaaaagcacccataGACTGATgaatatacagggtgt
ccctaattaaagtatcgagtcgaaacacaactatgagtagaaagttttat
gtgcgtgttcacaaaattgtattttaagctctccctcttttttctttgtc
attacgattaatttgtacgttgtaactaccttttgtaataagcctgtgtg
atggagaacgttcttatatttcagcgataacacacacaaacctttctact
caatcgcatgttcgatactttaattagggacaccctgtagaaaaACATAA
TATTCCCATTCTATAATAAAATTTGAACCATTCCGAAAGCTTAGGGAAAA
TTAACTATGACTTAAAAAAGGAATTGGGATGGAATCAAAAGAAAACGTGC
GATTATCATTGTATTccttacagtatgtggcccccaaaacggcgatcaaa
tttgaaatttctctcaaatctagaggaaaagagattttacaaaaattttt
gctgcatgaaaacctttaacatctctactttatttcctggaagttatttt
tcgaaattttcaatttcaacaatatttttcaatcgcttaaagatagatag
cttttttctaatggcccccaaaacggaggtttgaaattttagcgatttct
cgagatatctttaagatatgaatacaaaattttgaccatagttttgaaat
atgatttagagggttttgggtataaatttatttgataaaatctttacagt
atacccctggttgtcaaaatgcaggtttggggcccccaaattggaggtgt
agttaaaatcaaattattaagcccagtcgtaatagggggaaaaactatga
acatatttgtgttttcccttagaTTTACGACCctatggatgtaaaattta
tgattttcatgaaatatttcaagattttcgatattgcaaagtccaaactg
aaaaattagaaattttcaaaatgacaattttgatttaacaacgtcttaaN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagttccat
tcatgtatggaataagctgtgaaaattttagaaaaaaagcttaactgaaa
ctgaaaatattaagctttaaagatatttttctcctatattttgcaaaaaa
atgacagaatttgccgtttttgctgattcagcgaaaaattttatttataa
tgttaattttttgttataaactattacctcaaggtgataggaatagaatt
ccaagattttttgctttttctcatatttagaattttcggttttgtcaatg
ctgattcgagggctccaaaatactggttgaccttcaagatgctatatctt
ttacccagcctctaaagtcacagatatatttggattttctgaacggcatt
aggtgtagaaagtttcctatacccagttttcataacttattttcaatatc
caaggagctagagtgagttatatgcaatttttatctaatttgggtgttaa
aatatttcctttagacgcaaaatatgttattttgaatctgtctcaaacca
tcaaaaacatgctcattttttagtatagctatcattttttcaaaataaac
aaaaatcgtttaattctgataaatctacaagtcagaatcttcattttaat
gaaaacctccgttttgggggccgtctccgttttgggggccatatactgta
atcGATTCTCTCCTAGATGTAAACCCACCCTTAACCCTTTGGTTTGATCg
atttaatttgatttaaaattgatCATTTCATCTAAATTACTTGTTAcagc
atgaaggtaataaagatatagatggagagaaaacgtctcggtaatgatct
aaatggtcgttgaaatcttttataaatctattcaaagcggcttttCTTTG
ATGTACCATCATTGGAAGCAAAAAACATCAGGGGGGTTTCAGGGGTTACC
AGATTCCGCAATcccgccaattttttcttccgatttccgtcaaaccgtct
taaattgaaccaaaattccgtcaccgaaaattcctttgaaattcaatatt
tttgtcgaaaattccgcaaatttNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNatatcttttaccaattccgaaattccgcaa
ttttttttgctaaattccgtttttccacactaaaattgtctaattttccg
tctccgtcagagaacccaatttccgtaattccgtctaaattttcgccaaa
ttccgtcactccgtccgaaaaaagggccgattccgctcctctgCCAAACG
TGAAACAGAAAGagactgtttggttgattttgaaaaacttaattttagcC
TCTATCGATgactttatgggcagcttcccctagaagtttggagtattgtg
cttattagagcttattatgtgaagtttttttcaatttttcatgacaaggc
tattatatttcaatattatacttgttaaaaatgtaatgtcttttcattca
tcttaaatattcccacgagtatacccaaaattaatcatcttattcccaaa
gcaaccaaacagctctttgcttccgatgataaatcagaatagaacaaaag
gcattgactctccatctatctttattaccttcatggttaTAGTACAAGCA
ACCACTTTTgtactagcctggatatccaagctaaaaattttagaaaaaat
aagttttacctcagccagacaaagttctaaaataataaagCTTGGAATTA
GGTGAACCcatgttgacagattttcctgcatgaatcccatggctgcaaat
aaatatatgcacataatgacatgcataatttcaagatggtaccccagcag
tgataaatcaatttagaatggcagccttgaccataaaacatagacagtgt
ggtggagtCTATTAgacagaaagtgcaaagtgaattttggagaaaaagaa
tcatcaaaacaaaactttcaacccaaaacagcactacaaaattggcaaac
agaaaagaagaattgaagcaaaataaagatataccttttatagttttagt
tctttacacggTGCAACAAAGTcaataagaaaattaaaacatgatatcta
agcaagtatgaaaagaaaacaaccagaacatctaaaaattcccatctttt
gatcttcccacttcttccctaccattattgttatttttatttggatgcgt
ggtcaaacacccaagggagataattaggcattctattgttatttgcttcg
aagaagaaaaatcagggagatttgcaaagcagcatACACGCCTTTCTGAT
CGCCTGCGCGATCCATCCAAATACTTAGGCGGacacttcaagtcggctcg
cataatttctataCGCtcgccaccattcagatctctgatttgCTTGgacc
caaccaatcagaatatctgcataatcatcctcagataatcctcagatcag
aatgcacacgatctaggtaaaccagaccgtaaatataagaaatcaaaaag
aaaattacgggctggatatctaGGCTACTTTTGTCCATGCAACAGATAGA
TAATGAAATTTCGAtatttattttacaatttttactcTGCCTGCGCTATT
GATAGAAAACATAGCTTCAACATATTTATTCTAGACGTTGGGATTTAAAT
TTTACTAGATGTAATAGTTAAAACAATTTCTGATCTAAAATTTATCACTG
ATTTAAAATGTGTTGTGATAGTGAAGTGGAGACCCCCTTTTACCACCGTT
GaaggaggggggggggcagtaAGATTCCACTTCCCAGACTAGATTCTAAC
GTAGGGTTTACTACATAAACCTTAACCACTTACAATCAGGGTtctaatat
ttgagaaaaaaaagggaaattcccacgaaatcttgtGGCCACAAACGATT
cggaagcgctctaacttatGTTGAAAGGGTTTTAACGCTAGTTTTAGGAC
TTGAAGatatccaaaagttcaaaaatggtccaataagactcagaatatag
cttggaagtcaatgaaCCCTTCCGAACTGAAATATTTGATTACATTTAAC
AAATAGCCCAAAAGCAACTTTCTCACCCGAgcttcaaatttcgaaaaacg
aggaaataaccaATATGCTCAATACAGTGTGTTCTGCAAAATAGTAtact
caaaaaagtaaaatagaattatgaaaagtttttaagCTTAACCAACTTAA
ATTCTAAATTTGCTGAAGACACATTTATTCAGCGTTCTACAGTGCGAGAA
GTCTTTGTTTTACAGATATAAAGCTTCAAGCACACCAAGTTGGAGATTTA
AAAAGATAGAAGAAtagaaaagagattttcaaagcaaaaagctaaaactt
ttGATTGATAGCTCTCTCTATCTCTTatgtcattttgataaaaatttccc
aTTTTAATGGTCAAACTTATTCACCTTCCGAGTCGAATTTCTCGTTAGTG
AAAAGCTGGTTGAATATAATTCTTTCAGCAATGAAAAGAAGGGACATTTT
TCTTTCTGCTGCATATAAAATTAACTGTCTTAGACATTTCTACCTTTTGC
AAATTAACGTTAGTTATGACTTATCATAGCTTACTCTGGAGTAACTTACT
CCATTTTcaatgtttaaaagttttgcaCCCTTGAGTACTTAAAACTTGAT
ATCTCTTAAACTAAAAAACCTTctgaagaacatttttaagcacAGAGAGC
TGAATAGCTACACTTTCAGCTATACCAAGAATTGAAATTATTTGtttagt
catttttttcaaagaactACCTTAGTTTTTAAACATACTTTTTTGCGGAA
CACGCTGTATATTTCAAAGCAGATTGTAGGAGGCTCAGAAAACCCGAAGT
TAGAGAGACCCCCGAATTAGAAAAACCCAAGCTACGACAAATATGTCCCC
CAAAAATATACTCAAAAATGTGAAAACTAACTTTTGAAAGAACTTTTcga
gtttttttgaatttatgacgtcatattttgGCACAAGTCATTAGACAAAA
AAAAGATCAGAATAGTGAGTATCTATAGATAAATCGCGTCGACGGACGAA
TTTTCTCTAGCCTTCTTTCGCACCACGCCACTGTTTTACAGGCTGATCGG
AAAGCAAGCTAGACTTTCCCCGCAATGAAATGAACTTTGCTTCCAGAACG
AATTTCCGCTTGATTTTCCGCTTGATTTTCCCTTCTAGAAGCAAAGCAGA
TATAATACACGGGATAAGTTTAGCTTGCTTTCCGATCAGCCTGTAAAAAA
GTACCGTGGTGCGAATGAAGGCTAGagaaaattcgtccgtcgtcgtgatt
tatcTATAGATACTTAACCTATCGATATTAACTTCACTATTGACAGTCGT
TCCTCTACCAAACTTGTTATAGGCTTAGCTAACATTAACATAGggaaatt
atattttcttcCATCACTCTGCATAATCATTGACGTATTTTGTACCAGAT
TGTATCTAACGTAAACGTAGCATaactctacggcaatgaattttaaagtt
TTCGTAGATATCGAGCCTGTTTAAGACAACTTTTGGTGTTTAAATTGAAT
TAAAGGCTGGGAAATGTTTACCAGATAGGCATATCAAATAATTTTACttt
cagctcaaaaaatatAGGTGTAACGGCGTAACCGTTTTGCGGTAATATTA
TAGGAATATGTAGTGACGTAACTACTCTCCCTTTATTGTTTCAGGTACGG
TCGATCGAGCACCGACAAGTCTTCATGATTCACTTGTGTTCCCTTCAACT
GCAAATGATTTTACTTCAAAATTAGAATACGCTTATTCAAAGAGTGGACA
AGACTTGAAAGTCTTACAAAAAGAAGTAGAAGAAAGACGATCGAAGCTTG
TACGTAGTCCACTTTACGGCGAAGATCAATCGTGTAAGAATAATAATCGA
ATCGCTGGACTTACCAAATTGTTTGATGCATGGGCACATATGGCAAAATT
GTTTAATATTCGATATTTTATCGTATATGGATCGCTGATCGGAGCGGAGA
GAGATCGTAAGTATTCTTTAACCTGAACTGAAAATATTCGGTATTGAAGT
AACTGTAACTTATTTATCTAAGAGCGACACGAAAAATTTTAGTACAAATC
TTTTATCgcgtcatccagtctatcaaaaagctttaagtggaccccgggct
aatcATGAATACAATAGACCACTAAAGAATCAACCAGAGCAACGTATTTC
AACTGTATTGGACCACTTACATTACAACCAGTTAATAAAGCTTTGTAtgg
caattttgttttgatgatgagCGCATGGAGGAAGTCAAGAAAGAATTCTT
GACAAAGAAGCTTCAAATAAGGCTGTATAATcgttaaaatcttaaaatat
atAGTTTGGTTGATATCTATTCTAGATATCtatagacaggagacccgttc
tgtatttttttctaatctgctatatacaggacgggtatgacctATGAGGA
AGATCTCTGCCTCGAAAAATTTATAgcgggaaattcgaatttagcgctgt
cctcacttactaaaataaaaaccaaatttagGACCTTGCGCTTTCTCTAT
GAATGTGACCAGTAACagaataacaaattttgattagctgtgttttcaac
cgtcatTTGGATCTAAGAAATTCAAACTCctagcccataccatgctatgt
ATTTCGCtatcagtatataaaataagaaatcatagcatggatctccaggc
taagaTATCTAATATTCTAAATTCCTAAATATAATTTCCATTATTACTAC
AGGTAACATCGTCCCGTATGATTTAGACGACGACGTTATGATGTCAGAAG
ATGAGGTGccaaaactccaaaaaatgATAGATGATAATTTCTCAGTCGGT
GATAACAAGATTCATCTTCGCATCCATCCAGAATATAAGACACATTGGCG
AAAACGTACCAAGATTTGTTGTAATGGCAAAGTCAGCCATGGACCAAACA
GTAACACGTGTTGGGACCAATGTGCAGTACCCAATCCTCTAGGTCGTCTC
ATACTAGGCCCAGTACTGCATATAGGAATTATAGGTTACAAACTGATTAA
AAATAATACTGTTTTGAAAATGACATGTCATGAAGAATATGGTTTTAAAA
CTGAGTTTAATTGGAAAGATTTAGCACCTCGTGATTGTGAATTTCTTGGA
CATAAGACATACTGTCCAACAAATGCCAATTTGATAAACACGGAAGTCTA
TGGTAAACATTGGAAAGATccatactcttaggtgccaaataaacgggggg
gttcgaataaacgggggggttggaaattttttgaaaNTCtatatacagga
cgggtatgacctATGAGGaagatttctgcctcaaaaaatttatagcggga
aattcgaatttagcgctgtcctcacttactaaaataaaaaccaaatttag
GACCTTGCGCTTTCTCTATGAATGTGACCAGTAACagaataacaaatttt
gattagctgtgttttcaaccgtcatTTGGATCTAAGAAATTCAAACTCct
agcccataccatgctatgtATTTCGCtatcagtatataaaataagaaatc
atagcatggatctccaggctaagaTATCTAATATTCTAAATTCCTAAATA
TAATTTCCATTATTACTACAGGTAACATCGTCCCGTATGATTTAGACGAC
GACGTTATGATGTCAGAAGATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059508-exon-scaffold_329-1491911889:180007..180198 | TCONS_00059508-exon-scaffold_329-1491911889:180007..180198 | Clytia hemisphaerica | exon |
| TCONS_00059508-exon-scaffold_329-1510915933:180007..180198 | TCONS_00059508-exon-scaffold_329-1510915933:180007..180198 | Clytia hemisphaerica | exon |
| TCONS_00059508-exon-scaffold_329-1575043694:180007..180198 | TCONS_00059508-exon-scaffold_329-1575043694:180007..180198 | Clytia hemisphaerica | exon |
| TCONS_00059508-exon-scaffold_329-1491911889:188851..189162 | TCONS_00059508-exon-scaffold_329-1491911889:188851..189162 | Clytia hemisphaerica | exon |
| TCONS_00059508-exon-scaffold_329-1510915933:188851..189162 | TCONS_00059508-exon-scaffold_329-1510915933:188851..189162 | Clytia hemisphaerica | exon |
| TCONS_00059508-exon-scaffold_329-1575043694:188851..189162 | TCONS_00059508-exon-scaffold_329-1575043694:188851..189162 | Clytia hemisphaerica | exon |
| TCONS_00059508-exon-scaffold_329-1491911889:190778..190830 | TCONS_00059508-exon-scaffold_329-1491911889:190778..190830 | Clytia hemisphaerica | exon |
| TCONS_00059508-exon-scaffold_329-1510915933:190778..190830 | TCONS_00059508-exon-scaffold_329-1510915933:190778..190830 | Clytia hemisphaerica | exon |
| TCONS_00059508-exon-scaffold_329-1575043694:190778..190830 | TCONS_00059508-exon-scaffold_329-1575043694:190778..190830 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:180007..190830 + |
Blast
The following BLAST results are available for this feature:
|
