TCONS_00059484 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059484
Unique NameTCONS_00059484
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length642

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059484 ID=TCONS_00059484|Name=TCONS_00059484|organism=Clytia hemisphaerica|type=transcript|length=642bp
caaatatttattttgtaaaaatacatAGTATGATTcatgagataaaaaaa
agttaaaacctATATATAACTTATCTATACAAAGCCttattaaaaagtat
ttttggTCAATTAGGTATATTCATACCACCAGTAATTTTTCCAATACAAA
GGCAAACCAAAACAACCAGGATTAATTAAACCATATCATCTTTTCAATAG
CGAAGAAACTCATAACAATGTGTGGAATAAAAGAGCTAATCTTATATTGT
ATTTTGTTCGAATCACTTTCATAAAGCCAAGTAATAACCATGAATGGTAG
CAACAAATAATTCTTTCAAATAACAACTAGCATGATCAATGACATTTTCA
AATGTGTGCAAAAATAATGACGATAACAGATTTTGTCGACAGCATACCAA
CAAAGTAACAGTGAGGAGCGACGGGCTGTTGGTTTAATCTAGTAGAacaa
aatgattaaaaactTAAAAGGATAAGTTATTAATGCAgtgttttaaaaat
atcattatCGAACAGGAACACCACGACAAATAGCGAATTAGGATGCAAAG
TTCTGTGAGCATACGAACAAATTCCAATCACAATATGACAACAAATTGAC
CAACAATATAAATTACCAACATTCGATCTACATAACATATTG
Run BLAST on NCBI

transcript from alignment at scaffold_328:1163..3143-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059484 ID=TCONS_00059484|Name=TCONS_00059484|organism=Clytia hemisphaerica|type=transcript|length=1981bp|location=Sequence derived from alignment at scaffold_328:1163..3143- (Clytia hemisphaerica)
CAAATATTTATTTTGTAAAAATACATAGTATGATTCATGAGATAAAAAAA
AGTTAAAACCTATATATAACTTATCTATACAAAGCCTTATTAAAAAGTAT
TTTTGGTCAATTAGGTATATTCATACCACCAGTAATTTTTCCAATACAAA
GGCAAACCAAAACAACCAGGATTAATTAAACCATATCATCTTTTCAATAG
CGAAGAAACTCATAACAATGTGTGGAATAAAAGAGCTAATCTTATATTGT
ATTTTGTTCGAATCACTTTCATAAAGCCAAGTAATAACCATGAATGGTAG
CAACAAATAATTCTTTCAAATAACAACTAGCATGATCAATGACATTTTCA
AATGTGTGCAAAAATAATGACGATAACAGATTTTGTCGACAGCATACCAA
CAAAGTAACAGTGAGGAGCGACGGGCTGTTGGTTTAATCTAGTAGAACAA
AATGATTAAAAACTTAAAAGGATAAGTACAAATATATATTATCTATATTT
TGATGGGAAGCAGGGCCAGAAATATTGACAAATGCATTCCAATTTAGGAT
TGTTACTAGTGTGATACAGGGCATTATCATTATTATTATATTATCAGATA
CAGGAACAAATGATTGATTTGAAAATAGTTATTAGTTAAAATGTAGAGAC
CTTTTCATAAATTACGTCACGAACATCACTTGCCTCGTATTCAAACAATT
ACCATGGTGATTATGTCCCTTGAGACATTAAATAATTTTTTTATAAATAG
AAAGTAGTTTTAATAAAATCCACTTGGAGTTAATCACCATGACAATAATT
TCAAAACGAGGCAAGTGATGTTCGTGACGTAATTTATGAAAAGGTCTATT
GTAATGAATTAATGTTTCTATATCAAACTTAGTAGATATAAATTACTTAG
ATTACCTGCTTTTGAATTTTGTAGCAACACGATTCAACTTGTTGGAGGGA
AAGAGTCTAATAATTGTTATCTCTGCTGAATAAATATGACAAGCCAATGA
TGAACGATGGAATGGTTGATCATTATATCCTGATGTGAAATAAAAAAATA
ATAGTTCATGTATATATAGGCTATATAGGTACTAAATAAATGTTGACTAA
AGGTTTAGCGAAACCACATCGTAAATAAAATAAAAATGTACTTTTAGATT
GAGAGTTTATAGCTCTGGCTAATTATGTAATAAGATGCACACCATATACG
ACAAAGCAACCTAAAATCATAGTGTCATTGGAGGTTATGTCCCCATCATA
CCTAAAATTAAAATTTACTATCCCCCCTTTCATTTTTCCCCACTCTGGCT
CCTAAAAATTTTTTGTCCTCCCCCCTCAAGAAAAGTTTTGTATACCATTT
TTGTTCAATAAAGGCAGTTTTAAAATGAAAAGGATGCTTTGGATTCAAGT
TCTAACTCTTTCTTATTGCTGGTTGAAAGAAATGAAATAAACCTAAATAG
CACCTTTTTTTTTAATTTTTAATTGACATTTGATAGGTTCCTTATTCCCC
CTCCTCGTTTATTTCCCACCCTGGTTTCAAAAAAAATACTCCCCTATAGG
TCCTTTTGGCTTCAAAATATATCCCCCCTAAAACCAGGGAGGAGGACACT
TTGAAAACCTGATAGGGAGAGAAAATACAATACTAAACATTATGTATTAA
GCTGTTTTCAATAGATTACTCACTTCTTCTGTGTCATTAGGGAGCATCTA
TGTGTGGTCTAAGTGTATTCTGTATGCCATTAGGAAGCATCTAAATTTCT
TTGTTCAATTGAGACATTCGAAGTTCCCAGGTGTTGAATTTAACGACTGA
TTATTTCTTTACAGGTTATTAATGCAGTGTTTTAAAAATATCATTATCGA
ACAGGAACACCACGACAAATAGCGAATTAGGATGCAAAGTTCTGTGAGCA
TACGAACAAATTCCAATCACAATATGACAACAAATTGACCAACAATATAA
ATTACCAACATTCGATCTACATAACATATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037447XLOC_037447Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059484-exon-scaffold_328-1575043694:2669..3143TCONS_00059484-exon-scaffold_328-1575043694:2669..3143Clytia hemisphaericaexon
TCONS_00059484-exon-scaffold_328-1575043694:1163..1329TCONS_00059484-exon-scaffold_328-1575043694:1163..1329Clytia hemisphaericaexon
TCONS_00059484-exon-scaffold_328-1510915933:2669..3143TCONS_00059484-exon-scaffold_328-1510915933:2669..3143Clytia hemisphaericaexon
TCONS_00059484-exon-scaffold_328-1510915933:1163..1329TCONS_00059484-exon-scaffold_328-1510915933:1163..1329Clytia hemisphaericaexon
TCONS_00059484-exon-scaffold_328-1491911889:2669..3143TCONS_00059484-exon-scaffold_328-1491911889:2669..3143Clytia hemisphaericaexon
TCONS_00059484-exon-scaffold_328-1491911889:1163..1329TCONS_00059484-exon-scaffold_328-1491911889:1163..1329Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_328supercontigscaffold_328:1163..3143 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0798993	0	0	0.110494	0.0873135	0	0	0	0.0855232	0	0.27284	0.49043	0.282954	1.53533	1.0485	0.676589	0.441307	2.70005	1.09371	1.50516	1.39105	0.563669	0.427047	0.0879697	0.157022	0.89879	0.359705	0.272824	0.277964
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059484 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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