TCONS_00059471 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059471
Unique NameTCONS_00059471
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length312

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059471 ID=TCONS_00059471|Name=TCONS_00059471|organism=Clytia hemisphaerica|type=transcript|length=312bp
AGTATTCAAATGACACATCAACTAAATGGGAATATGTTTGGCAGTACGGC
GGCACTGTTTCATATTGTTCAGCTGTGAGTTCGAGCAAAGAAAAAATGGC
AGAGACACCAGCGTCATGTGAAGTCGTCGAGATTAAGATTAAAGAGGAGA
AGGAGATCTTCAATCAAAACGAAAGTATGTTTACCCATCAAGAGAAAAAC
GAAAATCATCCTAGtcaagaaatcgaaagtgaccaACAAATAGTAAAGGA
TGATAATTGCCAAAGTGAGATCAATTTCAGTCCGCGATATGATAAGGAAA
ATAATCATGATG
Run BLAST on NCBI

protein sequence of TCONS_00059471-protein

>TCONS_00059471-protein ID=TCONS_00059471-protein|Name=TCONS_00059471-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
YSNDTSTKWEYVWQYGGTVSYCSAVSSSKEKMAETPASCEVVEIKIKEEK
EIFNQNESMFTHQEKNENHPSQEIESDQQIVKDDNCQSEINFSPRYDKEN
NHD
Run BLAST on NCBI

transcript from alignment at scaffold_327:314723..315034

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059471 ID=TCONS_00059471|Name=TCONS_00059471|organism=Clytia hemisphaerica|type=transcript|length=312bp|location=Sequence derived from alignment at scaffold_327:314723..315034 (Clytia hemisphaerica)
CATCATGATTATTTTCCTTATCATATCGCGGACTGAAATTGATCTCACTT
TGGCAATTATCATCCTTTACTATTTGTtggtcactttcgatttcttgaCT
AGGATGATTTTCGTTTTTCTCTTGATGGGTAAACATACTTTCGTTTTGAT
TGAAGATCTCCTTCTCCTCTTTAATCTTAATCTCGACGACTTCACATGAC
GCTGGTGTCTCTGCCATTTTTTCTTTGCTCGAACTCACAGCTGAACAATA
TGAAACAGTGCCGCCGTACTGCCAAACATATTCCCATTTAGTTGATGTGT
CATTTGAATACT

Coding sequence (CDS) from alignment at scaffold_327:314723..315034

>TCONS_00059471 ID=TCONS_00059471|Name=TCONS_00059471|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at scaffold_327:314723..315034 (Clytia hemisphaerica)
ATCATGATTATTTTCCTTATCATATCGCGGACTGAAATTGATCTCACTTT
GGCAATTATCATCCTTTACTATTTGTtggtcactttcgatttcttgaCTA
GGATGATTTTCGTTTTTCTCTTGATGGGTAAACATACTTTCGTTTTGATT
GAAGATCTCCTTCTCCTCTTTAATCTTAATCTCGACGACTTCACATGACG
CTGGTGTCTCTGCCATTTTTTCTTTGCTCGAACTCACAGCTGAACAATAT
GAAACAGTGCCGCCGTACTGCCAAACATATTCCCATTTAGTTGATGTGTC
ATTTGAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037434XLOC_037434Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059471-proteinTCONS_00059471-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059471-exon-scaffold_327-1491911889:314723..315034TCONS_00059471-exon-scaffold_327-1491911889:314723..315034Clytia hemisphaericaexon
TCONS_00059471-exon-scaffold_327-1510915933:314723..315034TCONS_00059471-exon-scaffold_327-1510915933:314723..315034Clytia hemisphaericaexon
TCONS_00059471-exon-scaffold_327-1575043694:314723..315034TCONS_00059471-exon-scaffold_327-1575043694:314723..315034Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_327supercontigscaffold_327:314723..315034 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.13193	4.70083	2.72906	1.90711	0.464345	0	0.442687	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.487153	5.13239	4.30716	0	0	0	1.00776	1.91088	3.11502
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059471 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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