TCONS_00059467 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059467
Unique NameTCONS_00059467
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length501

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059467 ID=TCONS_00059467|Name=TCONS_00059467|organism=Clytia hemisphaerica|type=transcript|length=501bp
aaacaattttgttactttttctaaagaacgcgtcatttttattacttcaa
atgaccaattattaaagtatcttataaaaactccatctcatctgtgGAAA
CAGGGAAACCAAAAATTGAACCCGATAAAATTGGGAAGAAAAATCGGTCA
GTTGTAGAAGATAGGAAGAAGTTGTTTGAGCAAAAGGGAACAGAGAATTC
TACGGGACCGAAAAAAAGAACCAAAACTGGTGAATCTAAATGTGAAAGAG
AATCGGTCGCGACTTAGTGAGACGTGGTTTGAAGGTTTTAAGAAAGCCCC
ATTgaactcaattttttatttctgtgtATTTGGAAAACGGCCTGCACTAT
AAGACTTTCATTTGAGATGCcgaatttttgctgaatttagGATCAGCCCA
GATTGATCATTCTCTCCCAAAGAGCCTAGCTAGCCTGTAAAGATAAAGCA
AAAATCACATTCTGGGTCTGATAATGTGTCTCAGACAACACTCATCGTTC
A
Run BLAST on NCBI

transcript from alignment at scaffold_327:254356..254856

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059467 ID=TCONS_00059467|Name=TCONS_00059467|organism=Clytia hemisphaerica|type=transcript|length=501bp|location=Sequence derived from alignment at scaffold_327:254356..254856 (Clytia hemisphaerica)
TGAACGATGAGTGTTGTCTGAGACACATTATCAGACCCAGAATGTGATTT
TTGCTTTATCTTTACAGGCTAGCTAGGCTCTTTGGGAGAGAATGATCAAT
CTGGGCTGATCctaaattcagcaaaaattcgGCATCTCAAATGAAAGTCT
TATAGTGCAGGCCGTTTTCCAAATacacagaaataaaaaattgagttcAA
TGGGGCTTTCTTAAAACCTTCAAACCACGTCTCACTAAGTCGCGACCGAT
TCTCTTTCACATTTAGATTCACCAGTTTTGGTTCTTTTTTTCGGTCCCGT
AGAATTCTCTGTTCCCTTTTGCTCAAACAACTTCTTCCTATCTTCTACAA
CTGACCGATTTTTCTTCCCAATTTTATCGGGTTCAATTTTTGGTTTCCCT
GTTTCcacagatgagatggagtttttataagatactttaataattggtca
tttgaagtaataaaaatgacgcgttctttagaaaaagtaacaaaattgtt
t
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037430XLOC_037430Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059467-exon-scaffold_327-1491911889:254356..254856TCONS_00059467-exon-scaffold_327-1491911889:254356..254856Clytia hemisphaericaexon
TCONS_00059467-exon-scaffold_327-1510915933:254356..254856TCONS_00059467-exon-scaffold_327-1510915933:254356..254856Clytia hemisphaericaexon
TCONS_00059467-exon-scaffold_327-1575043694:254356..254856TCONS_00059467-exon-scaffold_327-1575043694:254356..254856Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_327supercontigscaffold_327:254356..254856 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.287652	0	0	0.163197	0.296955	1.01121	1.30318	0.372651	0.352496	0.348475	0.424765	1.99286	1.16372	0.479437	0.517187	0.395113	1.52811	0.625613	0.178161	0.146154	0.264649	0.397175	0.233133	0.184412	0.368915	0	0.178854
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059467 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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