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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059458 ID=TCONS_00059458|Name=TCONS_00059458|organism=Clytia hemisphaerica|type=transcript|length=596bp
aaactCCTGGACGATGGATACTATTGGAGCCTTGATAATGGCAAAAGTCC
CCATTCTGGTGACAACAAAAGGTTGACTGAAGAAGCCATCAATAGGGTGC
TTGGCCTACATCCTGAAATGGACAAGAAAGAACTCAAAGCTGCTGCTGTC
ATCAACTTTCGCTCGAGAAAGGATACCAAAAGGAAGATGGAGAGGAATCC
TAACTACAAGACGGATTCTGCAAAAAGCAGCCGCAAAGATACTAAGTTAA
ACAATCGCAGACGAGCACTGAAGAGTCTAAACGTTGACGCAATGACACGT
GCAACCATCTCAAAATATTGGTGCCTGAGTTAATGTCTTCAGAAGACGAC
GAAGAAGATGGCGAAGAAAAGATGTTCATAACTCGAAAATTAACCTGGAG
ATCAGAGGGTGTCGATAGCTGTTTGTCGAAACCCTAACTGGATCTGCGTG
TTCTTGCTTTAAAATATGTAAATATGATTGAAATTACCCACTTTTAACCA
GGCTTTGTGAAGCTTTTTAGCTCTTTCTTAGCTCTTTACCAATAATTATT
GGTGTTCTGGGAAATAATCCACAAAATAGAGGGAAATGAGTTTAGG Run BLAST on NCBI protein sequence of TCONS_00059458-protein >TCONS_00059458-protein ID=TCONS_00059458-protein|Name=TCONS_00059458-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
KLLDDGYYWSLDNGKSPHSGDNKRLTEEAINRVLGLHPEMDKKELKAAAV
INFRSRKDTKRKMERNPNYKTDSAKSSRKDTKLNNRRRALKSLNVDAMTR
ATISKYWCLS Run BLAST on NCBI transcript from alignment at scaffold_327:520897..523453- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059458 ID=TCONS_00059458|Name=TCONS_00059458|organism=Clytia hemisphaerica|type=transcript|length=2557bp|location=Sequence derived from alignment at scaffold_327:520897..523453- (Clytia hemisphaerica)
AAACTCCTGGACGATGGATACTATTGGAGCCTTGATAATGGCAAAAGGTA
AAATGAGGGAAAGGGAAATTAACTTATTTGTTTCAAATTTCACGATTTCT
AATCTTAGTTGTACAAGATTGCAAAGTTTTTTCAATAGCGCTCCGCAACG
CAAACATAATAATTATTACTTTCCATTTTTGTACGAGTTGCAATCCCACA
ATCCCATTTGCCTTAAAAATTTAAAATATTTGCAGGTTGTTAAATTTCTT
TAGTTTTTAATTAATAGACTGGCGAATTCAAGACAAACAAGTAGCCACAT
TGAGAAAATACAAAGGAGTGCAATGCAAACCAATTAAAAGTCACTCTATC
GTAGTTCTTTGACGTGGTCTAAAAGCGTCTCTGATTAATGTGTAAGAGAA
ATTAATGAAAATCTTGATGGGATTGGAACAAGTACAAGCACATCAAAAGT
AATAATTATGCCGAGAAAGAAGTCTTTCTAGATTCTGCGCAAACTCTGTT
ATTCTTAATGGAATTTCTCTATCAACTGTGGAGGTAACTAAATTAAATCA
TTTCTATTTAGTCCCCATTCTGGTGACAACAAAAGGTTGACTGAAGAAGC
CATCAATAGGGTGCTTGGCCTACATCCTGAAATGGACAAGAAAGAACTCA
AAGGTATGAGCTTTGTATTAAAGTAATTAATTTTAATTAACCTTAATTTT
CGCTCAAATTGATTGATTATCGGCACAGTAGTAAACCTTTATTTATGTTA
TCAATCCACTTTGCTTTATTTATTATTACGAGTATTATGTTTACTTTTGT
ATTTGCTGGTAGTGGTATACAAATGTTCGATTTTTACATAGTAATCATGC
TTTTGAAAACGTTGTAACATTTTTTTACATTTCAAAATTTGTGATCCCTT
TAGCTGCTGCTGTCATCAACTTTCGCTCGAGAAAGGATACCAAAAGGAAG
ATGGAGAGGAATCCTAACTACAAGACGGATTCTGCAAAAAGCAGCCGCAA
AGATACTGTAAGTTTTACCTGAACTGTGAAAGCAGCAAGCACAAATCATT
TTAGGGTAAACAAATCTATCTCTATTGCCAAGATAATCCATAATACTGCA
TAATTATCATTTATTGATTATGAATGTATTCTTGGGTTGAGACCTGTTTA
GTCTACAAAAAAACCCTAAGTTTTTAACAACCTTAAAGGGAGAATGTATT
ACTACGCAAATCAAAATATCTATACATTTCTAACAGCTCTCTTTTATGTT
TTGTGGTAATTGTAAGAATTTGAGAGAGCGTTTAGAAAATGAGAGAAATC
ATTATATACTTCTATGAAGATATATTATAGAAATCACATCATATCACAAG
CATCACAAGAAAAAAACTTGATATTTGGCATAAAGAAACTCTGATGAACG
GAGTTATTCCCCATATGAAAATTTTTTCATTTCAAAGGCAAAATATTTTG
GAATAAGTGTGTAAATATAATGTTTTTACTTTTGAGCAAGCCATTCTTTT
CTTTGTTTTGATAATGTACCGATACTTTTTCTCTTTCTCTGTGAGTTTCT
TTTGCACAGACATTGTGTTGTGTGAAAATTATAAAGAGAATCAAGGAAGG
CTATTTCTTTGATATCTATTATTGAAGATCTTTTGATCTAGTAATACACT
CTCCCTTTAAGACCTTTTTCAATTTAAAAAGACTTTTGTTGTGCGCAGAT
ATGTAATTTCGAGCTACGCAATTATGTAATTGAATCCCTGCGCAAATATG
TGGAACTTGTCTCAACTACATATATGCGCAGATCGCAGAAATCACATATC
TGCGCTAAATAATTACATATCTGCACACAACAACCTTAATAAATATAATT
TTTCAGACAATGATAAAAACATTAAATCAGTTGTATATTAATGAATTTAT
CAACTTTGGTATTACTTGCCTGAGGAGCTCTTAACTTGATCATAAGAATT
TTCCCAGAGGGCCACAGAGTGGGACCGTTACGTTGTTCTACATTATATTT
TGGTTCCAATGGCCCTAAAAAATCTAACACAGTACTTTTCTGTAGGTCAA
ACTTTTGTCTATTCTAAATGATTAAACTGAAAATTCTGGCAAACAATGAT
TACCATACATTTTGAAATATTTAATACAATATTAAATATTGAAATTGAAA
ACATATTTTTGCTTCATCAATAATTCTCCTGATTCGTTTTCTTTATCTTT
ACAGAAGTTAAACAATCGCAGACGAGCACTGAAGAGTCTAAACGTTGACG
CAATGACACGTGCAACCATCTCAAAATATTGGTGCCTGAGTTAATGTCTT
CAGAAGACGACGAAGAAGATGGCGAAGAAAAGATGTTCATAACTCGAAAA
TTAACCTGGAGATCAGAGGGTGTCGATAGCTGTTTGTCGAAACCCTAACT
GGATCTGCGTGTTCTTGCTTTAAAATATGTAAATATGATTGAAATTACCC
ACTTTTAACCAGGCTTTGTGAAGCTTTTTAGCTCTTTCTTAGCTCTTTAC
CAATAATTATTGGTGTTCTGGGAAATAATCCACAAAATAGAGGGAAATGA
GTTTAGG Coding sequence (CDS) from alignment at scaffold_327:520897..523453- >TCONS_00059458 ID=TCONS_00059458|Name=TCONS_00059458|organism=Clytia hemisphaerica|type=CDS|length=1332bp|location=Sequence derived from alignment at scaffold_327:520897..523453- (Clytia hemisphaerica)
AAGTTAAACAATCGCAGACGAGCACTGAAGAGTCTAAACGTTGACGCAAT
GACACGTGCAACCATCTCAAAATATTGGTGCCTGAGTTAACTGCTGCTGT
CATCAACTTTCGCTCGAGAAAGGATACCAAAAGGAAGATGGAGAGGAATC
CTAACTACAAGACGGATTCTGCAAAAAGCAGCCGCAAAGATACTTCCCCA
TTCTGGTGACAACAAAAGGTTGACTGAAGAAGCCATCAATAGGGTGCTTG
GCCTACATCCTGAAATGGACAAGAAAGAACTCAAAGAAACTCCTGGACGA
TGGATACTATTGGAGCCTTGATAATGGCAAAAGAAGTTAAACAATCGCAG
ACGAGCACTGAAGAGTCTAAACGTTGACGCAATGACACGTGCAACCATCT
CAAAATATTGGTGCCTGAGTTAACTGCTGCTGTCATCAACTTTCGCTCGA
GAAAGGATACCAAAAGGAAGATGGAGAGGAATCCTAACTACAAGACGGAT
TCTGCAAAAAGCAGCCGCAAAGATACTTCCCCATTCTGGTGACAACAAAA
GGTTGACTGAAGAAGCCATCAATAGGGTGCTTGGCCTACATCCTGAAATG
GACAAGAAAGAACTCAAAGAAACTCCTGGACGATGGATACTATTGGAGCC
TTGATAATGGCAAAAGAAGTTAAACAATCGCAGACGAGCACTGAAGAGTC
TAAACGTTGACGCAATGACACGTGCAACCATCTCAAAATATTGGTGCCTG
AGTTAACTGCTGCTGTCATCAACTTTCGCTCGAGAAAGGATACCAAAAGG
AAGATGGAGAGGAATCCTAACTACAAGACGGATTCTGCAAAAAGCAGCCG
CAAAGATACTTCCCCATTCTGGTGACAACAAAAGGTTGACTGAAGAAGCC
ATCAATAGGGTGCTTGGCCTACATCCTGAAATGGACAAGAAAGAACTCAA
AGAAACTCCTGGACGATGGATACTATTGGAGCCTTGATAATGGCAAAAGA
AGTTAAACAATCGCAGACGAGCACTGAAGAGTCTAAACGTTGACGCAATG
ACACGTGCAACCATCTCAAAATATTGGTGCCTGAGTTAACTGCTGCTGTC
ATCAACTTTCGCTCGAGAAAGGATACCAAAAGGAAGATGGAGAGGAATCC
TAACTACAAGACGGATTCTGCAAAAAGCAGCCGCAAAGATACTTCCCCAT
TCTGGTGACAACAAAAGGTTGACTGAAGAAGCCATCAATAGGGTGCTTGG
CCTACATCCTGAAATGGACAAGAAAGAACTCAAAGAAACTCCTGGACGAT
GGATACTATTGGAGCCTTGATAATGGCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059458-exon-scaffold_327-1575043694:523407..523453 | TCONS_00059458-exon-scaffold_327-1575043694:523407..523453 | Clytia hemisphaerica | exon |
| TCONS_00059458-exon-scaffold_327-1575043694:522801..522892 | TCONS_00059458-exon-scaffold_327-1575043694:522801..522892 | Clytia hemisphaerica | exon |
| TCONS_00059458-exon-scaffold_327-1575043694:522447..522550 | TCONS_00059458-exon-scaffold_327-1575043694:522447..522550 | Clytia hemisphaerica | exon |
| TCONS_00059458-exon-scaffold_327-1575043694:520897..521249 | TCONS_00059458-exon-scaffold_327-1575043694:520897..521249 | Clytia hemisphaerica | exon |
| TCONS_00059458-exon-scaffold_327-1510915933:523407..523453 | TCONS_00059458-exon-scaffold_327-1510915933:523407..523453 | Clytia hemisphaerica | exon |
| TCONS_00059458-exon-scaffold_327-1510915933:522801..522892 | TCONS_00059458-exon-scaffold_327-1510915933:522801..522892 | Clytia hemisphaerica | exon |
| TCONS_00059458-exon-scaffold_327-1510915933:522447..522550 | TCONS_00059458-exon-scaffold_327-1510915933:522447..522550 | Clytia hemisphaerica | exon |
| TCONS_00059458-exon-scaffold_327-1510915933:520897..521249 | TCONS_00059458-exon-scaffold_327-1510915933:520897..521249 | Clytia hemisphaerica | exon |
| TCONS_00059458-exon-scaffold_327-1491911889:523407..523453 | TCONS_00059458-exon-scaffold_327-1491911889:523407..523453 | Clytia hemisphaerica | exon |
| TCONS_00059458-exon-scaffold_327-1491911889:522801..522892 | TCONS_00059458-exon-scaffold_327-1491911889:522801..522892 | Clytia hemisphaerica | exon |
| TCONS_00059458-exon-scaffold_327-1491911889:522447..522550 | TCONS_00059458-exon-scaffold_327-1491911889:522447..522550 | Clytia hemisphaerica | exon |
| TCONS_00059458-exon-scaffold_327-1491911889:520897..521249 | TCONS_00059458-exon-scaffold_327-1491911889:520897..521249 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_327 | supercontig | scaffold_327:520897..523453 - |
Blast
The following BLAST results are available for this feature:
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