TCONS_00059447 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059447
Unique NameTCONS_00059447
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1326

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059447 ID=TCONS_00059447|Name=TCONS_00059447|organism=Clytia hemisphaerica|type=transcript|length=1326bp
CATCGTTCTTGCATTGCGATGGCCTCTGTACATAATCTTTTCTTTAGGTG
TGTACATATGATTCGGTTTTCTTGCATTCGCTCTCTCAATTTCTTTCTGT
TTCTCTCTATGAATCCTTATAAAAGATTGGATCTTCGAGGCTGCGTGCTG
ACGTTCCATAGTGTATCTAGTACCCGATGCATATGCATCACGTAATCTCT
CTCTAAAAGCTTCATCGAGTTCAAATTCGTCTTCGGATTCGTTGGTGGCC
AAGGTGGTTGTGGTGTCTGTTGGTAATTCAGAATGGGATGAAGTTGCTGA
TGATGTTGATTCTGAAGTATCTGAGGCTGGTGTTGTTGGTGATTCTTCTT
CGTCGTGGTCGGTTGAATCTGAACGACCAGCAACTGCAAGGAAACGATGA
CAAGGCTGTTGGTGATGTTCGCTTGAAGATGTTGATCTATCAAGAGTTGT
ACTATCAGGGTATAGTGGTGAGATACTTGAAGAACCTACAGCAATGGCAG
AATCTAGAGGATTTGCAGCCGAGTCTGATATGTCAGATGATGTATTCGTG
GTCTGATAAGAATGGTGAAGATAGTCTCTTGAAGATGATGGAAGGTCTAA
GGGACGATTATTGTTTAGTAGAGGAGTGTGCTCATCTGGCCCTTCAGTAT
ATTTATCCTGGGTGATACTGGTTTCAGTTGTAGTATTGGTCTTGGAACCA
TTAGTGGTGTCTGCAGAATTTGAGGGATTTTCCATTGATATTGGTTCCTC
TGCAACTATTTCACCTAAGTGAGTATTTGGATTTGCTTCTTCAGGAAAAG
ATGGAAGGGTTCGGCTGATGATATCTCCATCTTCAGTGGGTAGTGCCCCG
CTAAAAGGTTCATCTCGTTGATTCGAAATCGCTGATTCTTCTTCCTGGTG
TGATTGCGAGTGGCTTCCAACAGGTGTGGACATGCTACTTCCAGGTATGG
GCATGCTACTTCCAGGCGTGGGCTGGGCTACATCACTATCTTCACTTGAA
GTCGATGCATGCCTCACGGTTGAGGACATTGCACCTTCGATCCATCTGGA
GAAGAATTCTGACATTCTCTGCATAATGTTTTGTTCTGGTGAATCCTCCT
CATCTGTATCTGGTCTGGCATTGGGTCCTGTATCTGACCAATCACCGCGT
AGTCTAAGTCGTTTAGCAGGTGGTAGTTTATCAGTAAGTGATTCACTGGG
ATCTGTTAGTTCTTCTTGGTGATTTGTGGAGACTTGATCCACTTTTGAAG
ATTCTTCACGGACAGTGAAGAGGTAGATATAATCACTGCAATAGCTGACC
AATAAGTCGTTACCATCATTACTGTA
Run BLAST on NCBI

transcript from alignment at scaffold_327:406460..409186-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059447 ID=TCONS_00059447|Name=TCONS_00059447|organism=Clytia hemisphaerica|type=transcript|length=2727bp|location=Sequence derived from alignment at scaffold_327:406460..409186- (Clytia hemisphaerica)
CATCGTTCTTGCATTGCGATGGCCTCTGTACATAATCTTTTCTTTAGGTG
TGTACATATGATTCGGTTTTCTTGCATTCGCTCTCTCAATTTCTTTCTGT
TTCTCTCTATGAATCCTTATAAAAGATTGGATCTTCGAGGCTGCGTGCTG
ACGTTCCATAGTGTATCTAGTACCCGATGCATATGCATCACGTAATCTCT
CTCTAAAAGCTTCATCGAGTTCAAATTCGTCTTCGGATTCGTTGGTGGCC
AAGGTGGTTGTGGTGTCTGTTGGTAATTCAGAATGGGATGAAGTTGCTGA
TGATGTTGATTCTGAAGTATCTGAGGCTGGTGTTGTTGGTGATTCTTCTT
CGTCGTGGTCGGTTGAATCTGAACGACCAGCAACTGCAAGGAAACGATGA
CAAGGCTGTTGGTGATGTTCGCTTGAAGATGTTGATCTATCAAGAGTTGT
ACTATCAGGGTATAGTGGTGAGATACTTGAAGAACCTACAGCAATGGCAG
AATCTAGAGGATTTGCAGCCGAGTCTGATATGTCAGATGATGTATTCGTG
GTCTGATAAGAATGGTGAAGATAGTCTCTTGAAGATGATGGAAGGTCTAA
GGGACGATTATTGTTTAGTAGAGGAGTGTGCTCATCTGGCCCTTCAGTAT
ATTTATCCTGGGTGATACTGGTTTCAGTTGTAGTATTGGTCTTGGAACCA
TTAGTGGTGTCTGCAGAATTTGAGGGATTTTCCATTGATATTGGTTCCTC
TGCAACTATTTCACCTAAGTGAGTATTTGGATTTGCTTCTTCAGGAAAAG
ATGGAAGGGTTCGGCTGATGATATCTCCATCTTCAGTGGGTAGTGCCCCG
CTAAAAGGTTCATCTCGTTGATTCGAAATCGCTGATTCTTCTTCCTGGTG
TGATTGCGAGTGGCTTCCAACAGGTGTGGACATGCTACTTCCAGGTGTGG
GCATACTAGCTCCAGGTATGGGCATGCTACTTCCAGGCGTGGGCTGGGCT
ACATCACTATCTTCACTTGAAGTCGATGCATGCCTCACGGTTGAGGACAT
TGCACCTTCGATCCATCTGGAGAAGAATTCTGACATTCTCTGNTTTGTAA
ACCATATATTTGGGCTTTTTTCCGACGGGTGGAAATTTTGTGATGACGTC
ATCGGTTTTTGAATGACGTCATCAATTATTTTTTTCTTCCTGGAAAATTG
TATCATGATGGAGAACATCTGTACCAAATTTTATGACCATAGCTCTTCTA
GATCGAAAATAATCGAGGGTGGTAGATTCTACCCCCTGGGGATACGAAAG
TCAAATAAGCTTGGGGCTAATAGGGTTAAAGCGTTTTGGAAATTTTCGAG
AATATAGAGCACAATAAAACTAGCACTCACCATCGTTCTTGCATTGCGAT
GGCCTCTGTACATAATCTTTTCTTTAGGTGTGTACATATGATTCGGTTTT
CTTGCATTCGCTCTCTCAATTTCTTTCTGTTTCTCTCTATGAATCCTTAT
AAAAGATTGGATCTTCGAGGCTGCGTGCTGACGTTCCATAGTGTATCTAG
TACCCGATGCATATGCATCACGTAATCTCTCTCTAAAAGCTTCATCGAGT
TCAAATTCGTCTTCGGATTCGTTGGTGGCCAAGGTGGTTGTGGTGTCTGT
TGGTAATTCAGAATGGGATGAAGTTGCTGATGATGTTGATTCTGAAGTAT
CTGAGGCTGGTGTTGTTGGTGATTCTTCTTCGTCGTGGTCGGTTGAATCT
GAACGACCAGCAACTGCAAGGAAACGATGACAAGGCTGTTGGTGATGTTC
GCTTGAAGATGTTGATCTATCAAGAGTTGTACTATCAGGGTATAGTGGTG
AGATACTTGAAGAACCTACAGCAATGGCAGAATCTAGAGGATTTGCAGCC
GAGTCTGATATGTCAGATGATGTATTCGTGGTCTGATAAGAATGGTGAAG
ATAGTCTCTTGAAGATGATGGAAGGTCTAAGGGACGATTATTGTTTAGTA
GAGGAGTGTGCTCATCTGGCCCTTCAGTATATTTATCCTGGGTGATACTG
GTTTCATTTGTAGTATTGGTCTTGGAACCATTAGTGGTGTCTGCAGAATT
TGATGGATTTTCCATTGATATTGGTTCCTCTGCAGCTATTTCACCTAAGT
GAGTATTTGGATTTGCTTCTTCAGGAAAAGATGGAAGGGTTCGGCTGATG
ATAACTCCATCTTCAGTGGGTAGTGCCCCGCTAAAAGGTTCATCTCGTTG
ATTCGAAATCACTGATTCTTCTTCCTGGTGTGATTGCGAGTGGCTTCCAA
CAGGTGTGGACATGCTACTTCCAGGTGTGGACATACTAGATCCAGGTATG
GGCATGCTACTTCCAGGCGTGGGCTGGGCTACATCACTATCTTCACTTGA
AGTCGATGCATGCCTCACGGTTGAGGACATTGCACCTTCGATCCATCTGG
AGAAGAATTCTGACATTCTCTGCATAATGTTTTGTTCTGGTGAATCCTCC
TCATCTGTATCTGGTCTGGCATTGGGTCCTGTATCTGACCAATCACCGCG
TAGTCTAAGTCGTTTAGCAGGTGGTAGTTTATCAGTAAGTGATTCACTGG
GATCTGTTAGTTCTTCTTGGTGATTTGTGGAGACTTGATCCACTTTTGAA
GATTCTTCACGGACAGTGAAGAGGTAGATATAATCACTGCAATAGCTGAC
CAATAAGTCGTTACCATCATTACTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037416XLOC_037416Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059447-exon-scaffold_327-1575043694:408243..409186TCONS_00059447-exon-scaffold_327-1575043694:408243..409186Clytia hemisphaericaexon
TCONS_00059447-exon-scaffold_327-1575043694:406460..406841TCONS_00059447-exon-scaffold_327-1575043694:406460..406841Clytia hemisphaericaexon
TCONS_00059447-exon-scaffold_327-1510915933:408243..409186TCONS_00059447-exon-scaffold_327-1510915933:408243..409186Clytia hemisphaericaexon
TCONS_00059447-exon-scaffold_327-1510915933:406460..406841TCONS_00059447-exon-scaffold_327-1510915933:406460..406841Clytia hemisphaericaexon
TCONS_00059447-exon-scaffold_327-1491911889:408243..409186TCONS_00059447-exon-scaffold_327-1491911889:408243..409186Clytia hemisphaericaexon
TCONS_00059447-exon-scaffold_327-1491911889:406460..406841TCONS_00059447-exon-scaffold_327-1491911889:406460..406841Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_327supercontigscaffold_327:406460..409186 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.8872	26.3913	38.9863	34.7796	8.01188	7.20706	12.0944	12.7159	13.7799	15.3492	14.5838	10.7902	12.299	13.2258	10.6753	16.0377	23.3158	22.5632	13.0865	18.5603	18.3765	21.2835	10.3737	14.7879	32.8488	25.7509	12.9396	7.70695	8.66615	11.2409
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000048IQ_motif_EF-hand-BS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00059447 vs. Swiss-Prot (Human)
Match: DCAF6 (DDB1- and CUL4-associated factor 6 OS=Homo sapiens GN=DCAF6 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.450e-21
Identity = 54/106 (50.94%), Postives = 69/106 (65.09%), Query Frame = -1 
Query: 1030 YSNDGNDLLVSYCSDYIYLFTVREESSKVDQVSTNHQEELTDPS-ESLTDKL--PPAKRLRLRGDWSDTGPNARPDT----DEEDSPEQNIMQRMSEFFSRWIEGA 1326
            YS DG ++LVSY SDYIYLF  ++++++          EL  PS E   ++L  PP KRLRLRGDWSDTGP ARP++    D E SP  ++MQRMS+  SRW E A
Sbjct:  261 YSEDGQEILVSYSSDYIYLFDPKDDTAR----------ELKTPSAEERREELRQPPVKRLRLRGDWSDTGPRARPESERERDGEQSPNVSLMQRMSDMLSRWFEEA 356
The following BLAST results are available for this feature:
BLAST of TCONS_00059447 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DCAF61.450e-2150.94DDB1- and CUL4-associated factor 6 OS=Homo sapiens... [more]
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