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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059441 ID=TCONS_00059441|Name=TCONS_00059441|organism=Clytia hemisphaerica|type=transcript|length=2883bpRun BLAST on NCBI protein sequence of TCONS_00059441-protein >TCONS_00059441-protein ID=TCONS_00059441-protein|Name=TCONS_00059441-protein|organism=Clytia hemisphaerica|type=polypeptide|length=372bp MLRRGSMPSALHSQSIQPNWPMKQKFRGKRQPAYYLQPDYRIHEFNKRLQRun BLAST on NCBI transcript from alignment at scaffold_327:373289..381527- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059441 ID=TCONS_00059441|Name=TCONS_00059441|organism=Clytia hemisphaerica|type=transcript|length=8239bp|location=Sequence derived from alignment at scaffold_327:373289..381527- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_327:373289..381527- >TCONS_00059441 ID=TCONS_00059441|Name=TCONS_00059441|organism=Clytia hemisphaerica|type=CDS|length=13428bp|location=Sequence derived from alignment at scaffold_327:373289..381527- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00059441 vs. Swiss-Prot (Human)
Match: LDB2 (LIM domain-binding protein 2 OS=Homo sapiens GN=LDB2 PE=1 SV=1) HSP 1 Score: 231.876 bits (590), Expect = 2.021e-67 Identity = 122/309 (39.48%), Postives = 187/309 (60.52%), Query Frame = 3
Query: 168 KRQPAYYLQPDYRIHEFNKRLQGQSDKNDQTWWDELINEFFEEDASLLIQYKEKNHNKKLMIHRRLIPRYFRSLFEGGVSKIYYVVLESKESYMNATVSVDCKHASMITHFDQPKNLKVHTDGHLTIEFAFDSFMRIRHWKFIVKDTTEYLPKS--SFNEKDESKAEEMAKNVMEHGQPPKSLHYLRVGTVLESMFEMMARAKSGTMTPREALKSVLYDKWQATMLKMEFETRHRIWNQNTQSXXXXXXXXXXXTXXXXXXXXXXXXXXXXXXXXXXXMST--SDVMFVDEPVLMGGELGDDDERVITR 1082
+R Y +QP+YRI+E NKRLQ +++ +D WWD EFFE+DA+L + + ++ K+ I R LIPRYF ++FEGGV+ +YY++ SKESY N++++VDC +M+T +P KV T+G L +EF FD MRI+ W F ++ E +P+S + + +D ++++KN+ G +L+YLR+ +LE M E+M+R K+ ++PR+ LK+ L+ KWQ + TR Q T R K + + S + K +T+A +S+ DVM V EP LMGGE GD+DER+ITR
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTR-----QPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVMVVGEPTLMGGEFGDEDERLITR 322 The following BLAST results are available for this feature:
BLAST of TCONS_00059441 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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