TCONS_00059435 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059435
Unique NameTCONS_00059435
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length780

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059435 ID=TCONS_00059435|Name=TCONS_00059435|organism=Clytia hemisphaerica|type=transcript|length=780bp
GTACCTGTACGGATGGCTGCTAAGAGACCATCACGGCTGTCTGGTTCTGG
TTCCGGCGCTGGTTTCGGGGCACTCAGTTTGACACTTTGAAGGATGTTAG
CACTGAAACCTCCCGCGGCTGCCGATGGAGGAGGCGGTGGTAGTCCACCT
GCTGACGGTGGTGGCGGGGGAGGTGGGCCCCCAACAActggtggaggtgg
tggtggaggtggtcCTCCTCCTACACTTGGAGGAGGAGGTGGTGGTGGTG
GAACAGCCCCTCCTGTGACAGGGGGTGGTGGAGGGGGTGGGGGTACTGGT
GTGGAGCTTGGTGTTCCCATGAACTCAGGTGGTGGTGGTAAAGGTGAGTT
GGACACTGGCGGTGGAGGCGGCGGAGACATGGGTCTCGGTGACATTCCTT
GACCACCAGCCAtcggtggtggtggtggtggaggGCTACCAGGGTGTCTG
ATTGGGCTTCCTCCAGGTGGTGGAGGTGGAGCTGAAGATGGTCGACCTAT
GGAAGATGCATTAGATCCCCTCTTGGTAGATTGTCGGCGTGATGGTGACA
AGTGAGTGGAGTCATATGACTGTACAGAATGAGCAGGAGATGTTTCATGA
GGAGGAAGAGGGTCCGCTCCTCCACCGCCTGTATCTTTCTTTTGGATCTC
CCAATCAGGAATATTCTTGGCGACTTGTTTCTTTTTCACCCCTTTGACTT
GCTTCTTTTCGTTCATATCACGCCGCTTGCCACGATTGTCACGTTTCTAG
AAAAATAGAGTGAATAAAAGTAAGTTGAAG
Run BLAST on NCBI

transcript from alignment at scaffold_327:307988..310220-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059435 ID=TCONS_00059435|Name=TCONS_00059435|organism=Clytia hemisphaerica|type=transcript|length=2233bp|location=Sequence derived from alignment at scaffold_327:307988..310220- (Clytia hemisphaerica)
GTACCTGTACGGATGGCTGCTAAGAGACCATCACGGCTGTCTGGTTCTGG
TTCCGGCGCTGGTTTCGGGGCACTCAGTTTGACACTTTGAAGGATGTTAG
CACTGAAACCTCCCGCGGCTGCCGATGGAGGAGGCGGTGGTAGTCCACCT
GCTGACGGTGGTGGCGGGGGAGGTGGGCCCCCAACAACTGGTGGAGGTGG
TGGTGGAGGTGGTCCTCCTCCTACACTTGGAGGAGGAGGTGGTGGTGGAA
CAGCCCCTCCTGTGACAGGGGGTGGTGGAGGGGGTGGGGGTANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTGGTGGTGGAGGTGGTCCTCCTCCTACACTTGGAGGAGGAGGTGGTG
GTGGAACAGCCCCTCCTGTGACAGGGGGTGGTGGAGGGGGTGGGGGTACT
GGTGTGGAGCTTGGTGTTCCCATGAACTCAGGTGGTGGTGGTAAAGGTGA
GTTGGACACTGGCGGTGGAGGCGGCGGAGACATGGGTCTCGGTGACATTC
CTTGACCACCAGCCATCGGTGGTGGTGGTGGTGGAGGGCTACCAGGGTGT
CTGATTGGGCTTCCTCCAGGTGGTGGAGGTGGAGCTGAAGATGGTCGACC
TATGGAAGATGCATTAGATCCCCTCTTGGTAGATTGTCGGCGTGATGGTG
ACAAGTGAGTGGAGTCATATGACTGTACAGAATGAGCAGGAGATGTTTCA
TGAGGAGGAAGAGGGTCCGCTCCTCCACCGCCTGTATCTTTCTTTTGGAT
CTCCCAATCAGGAATATTCTTGGCGACTTGTTTCTTTTTCACCCCTTTGA
CTTGCTTCTTTTCGTTCATATCACGCCGCTTGCCACGATTGTCACGTTTC
TAGAAAAATAGAGTGAATAAAAGTAAGTTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037412XLOC_037412Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059435-exon-scaffold_327-1575043694:309980..310220TCONS_00059435-exon-scaffold_327-1575043694:309980..310220Clytia hemisphaericaexon
TCONS_00059435-exon-scaffold_327-1575043694:307988..308526TCONS_00059435-exon-scaffold_327-1575043694:307988..308526Clytia hemisphaericaexon
TCONS_00059435-exon-scaffold_327-1510915933:309980..310220TCONS_00059435-exon-scaffold_327-1510915933:309980..310220Clytia hemisphaericaexon
TCONS_00059435-exon-scaffold_327-1510915933:307988..308526TCONS_00059435-exon-scaffold_327-1510915933:307988..308526Clytia hemisphaericaexon
TCONS_00059435-exon-scaffold_327-1491911889:309980..310220TCONS_00059435-exon-scaffold_327-1491911889:309980..310220Clytia hemisphaericaexon
TCONS_00059435-exon-scaffold_327-1491911889:307988..308526TCONS_00059435-exon-scaffold_327-1491911889:307988..308526Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_327supercontigscaffold_327:307988..310220 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
32.2908	31.7719	13.4749	9.86882	27.9465	22.7359	27.0052	26.7305	20.7223	31.7251	22.8036	17.9014	21.0653	24.9491	13.6256	15.057	27.6469	19.16	14.798	17.2747	22.0008	37.1315	25.9323	28.1293	39.0807	32.7515	12.4217	12.2264	18.0267	17.8179
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059435 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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