TCONS_00059435 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059435
Unique NameTCONS_00059435
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length780

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059435 ID=TCONS_00059435|Name=TCONS_00059435|organism=Clytia hemisphaerica|type=transcript|length=780bp
GTACCTGTACGGATGGCTGCTAAGAGACCATCACGGCTGTCTGGTTCTGG
TTCCGGCGCTGGTTTCGGGGCACTCAGTTTGACACTTTGAAGGATGTTAG
CACTGAAACCTCCCGCGGCTGCCGATGGAGGAGGCGGTGGTAGTCCACCT
GCTGACGGTGGTGGCGGGGGAGGTGGGCCCCCAACAActggtggaggtgg
tggtggaggtggtcCTCCTCCTACACTTGGAGGAGGAGGTGGTGGTGGTG
GAACAGCCCCTCCTGTGACAGGGGGTGGTGGAGGGGGTGGGGGTACTGGT
GTGGAGCTTGGTGTTCCCATGAACTCAGGTGGTGGTGGTAAAGGTGAGTT
GGACACTGGCGGTGGAGGCGGCGGAGACATGGGTCTCGGTGACATTCCTT
GACCACCAGCCAtcggtggtggtggtggtggaggGCTACCAGGGTGTCTG
ATTGGGCTTCCTCCAGGTGGTGGAGGTGGAGCTGAAGATGGTCGACCTAT
GGAAGATGCATTAGATCCCCTCTTGGTAGATTGTCGGCGTGATGGTGACA
AGTGAGTGGAGTCATATGACTGTACAGAATGAGCAGGAGATGTTTCATGA
GGAGGAAGAGGGTCCGCTCCTCCACCGCCTGTATCTTTCTTTTGGATCTC
CCAATCAGGAATATTCTTGGCGACTTGTTTCTTTTTCACCCCTTTGACTT
GCTTCTTTTCGTTCATATCACGCCGCTTGCCACGATTGTCACGTTTCTAG
AAAAATAGAGTGAATAAAAGTAAGTTGAAG
Run BLAST on NCBI

transcript from alignment at scaffold_327:307988..310220-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059435 ID=TCONS_00059435|Name=TCONS_00059435|organism=Clytia hemisphaerica|type=transcript|length=2233bp|location=Sequence derived from alignment at scaffold_327:307988..310220- (Clytia hemisphaerica)
GTACCTGTACGGATGGCTGCTAAGAGACCATCACGGCTGTCTGGTTCTGG TTCCGGCGCTGGTTTCGGGGCACTCAGTTTGACACTTTGAAGGATGTTAG CACTGAAACCTCCCGCGGCTGCCGATGGAGGAGGCGGTGGTAGTCCACCT GCTGACGGTGGTGGCGGGGGAGGTGGGCCCCCAACAACTGGTGGAGGTGG TGGTGGAGGTGGTCCTCCTCCTACACTTGGAGGAGGAGGTGGTGGTGGAA CAGCCCCTCCTGTGACAGGGGGTGGTGGAGGGGGTGGGGGTANNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNTGGTGGTGGAGGTGGTCCTCCTCCTACACTTGGAGGAGGAGGTGGTG GTGGAACAGCCCCTCCTGTGACAGGGGGTGGTGGAGGGGGTGGGGGTACT GGTGTGGAGCTTGGTGTTCCCATGAACTCAGGTGGTGGTGGTAAAGGTGA GTTGGACACTGGCGGTGGAGGCGGCGGAGACATGGGTCTCGGTGACATTC CTTGACCACCAGCCATCGGTGGTGGTGGTGGTGGAGGGCTACCAGGGTGT CTGATTGGGCTTCCTCCAGGTGGTGGAGGTGGAGCTGAAGATGGTCGACC TATGGAAGATGCATTAGATCCCCTCTTGGTAGATTGTCGGCGTGATGGTG ACAAGTGAGTGGAGTCATATGACTGTACAGAATGAGCAGGAGATGTTTCA TGAGGAGGAAGAGGGTCCGCTCCTCCACCGCCTGTATCTTTCTTTTGGAT CTCCCAATCAGGAATATTCTTGGCGACTTGTTTCTTTTTCACCCCTTTGA CTTGCTTCTTTTCGTTCATATCACGCCGCTTGCCACGATTGTCACGTTTC TAGAAAAATAGAGTGAATAAAAGTAAGTTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037412XLOC_037412Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059435-exon-scaffold_327-1575043694:309980..310220TCONS_00059435-exon-scaffold_327-1575043694:309980..310220Clytia hemisphaericaexon
TCONS_00059435-exon-scaffold_327-1575043694:307988..308526TCONS_00059435-exon-scaffold_327-1575043694:307988..308526Clytia hemisphaericaexon
TCONS_00059435-exon-scaffold_327-1510915933:309980..310220TCONS_00059435-exon-scaffold_327-1510915933:309980..310220Clytia hemisphaericaexon
TCONS_00059435-exon-scaffold_327-1510915933:307988..308526TCONS_00059435-exon-scaffold_327-1510915933:307988..308526Clytia hemisphaericaexon
TCONS_00059435-exon-scaffold_327-1491911889:309980..310220TCONS_00059435-exon-scaffold_327-1491911889:309980..310220Clytia hemisphaericaexon
TCONS_00059435-exon-scaffold_327-1491911889:307988..308526TCONS_00059435-exon-scaffold_327-1491911889:307988..308526Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_327supercontigscaffold_327:307988..310220 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
32.2908 31.7719 13.4749 9.86882 27.9465 22.7359 27.0052 26.7305 20.7223 31.7251 22.8036 17.9014 21.0653 24.9491 13.6256 15.057 27.6469 19.16 14.798 17.2747 22.0008 37.1315 25.9323 28.1293 39.0807 32.7515 12.4217 12.2264 18.0267 17.8179
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059435 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top