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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059420 ID=TCONS_00059420|Name=TCONS_00059420|organism=Clytia hemisphaerica|type=transcript|length=2217bp
AGAATGTCAGAATTCTTCTCCAGATGGATCGAAGGTGCAATGTCCTCAAC
CGTGAGGCATGCATCGACTTCAAGTGAAGATAGTGATGTAGCCCAGCCCA
CGCCTGGAAGTAGCATGCCCATACCTGGAGCTAGTATGCCCACACCTGGA
AGTAGCATGTCCACACCTGTTGGAAGCCACTCGCAATCACACCAGGAAGA
AGAATCAGCGATTTCGAATCAACGAGATGAACCTTTTAGCGGGGCACTAC
CCACTGAAGATGGAGATATCATCAGCCGAACCCTTCCATCTTTTCCTGAA
GAAGCAAATCCAAATACTCACTTAGGTGAAATAGTTGCAGAGGAACCAAT
ATCAATGGAAAATCCCTCAAATTCTGCAGACACCACTAATGGTTCCAAGA
CCAATACTACAACTGAAACCAGTATCACCCAGGATAAATATACTGAAGGG
CCAGATGAGCACACTCCTCTACTAAACAATAATCGTCCCTTAGACCTTCC
ATCATCTTCAAGAGACTATCTTCACCATTCTTATCAGACCACGAATACAT
CATCTGACATATCAGACTCGGCTGCAAATCCTCTAGATTCTGCCATTGCT
GTAGGTTCTTCAAGTATCTCACCACTATACCCTGATAGTACAACTCTTGA
TAGATCAACATCTTCAAGCGAACATCACCAACAGCCTTGTCATCGTTTCC
TTGCAGTTGCTGGTCGTTCAGATTCAACCGACCACGACGAAGAAGAATCA
CCAACAACACCAGCCTCAGATACTTCAGAATCAACATCATCAGCAACTTC
ATCCCATTCTGAATTACCAACAGACACCACAACCACCTTGGCCACCAACG
AATCCGAAGACGAATTTGAACTCGATGAAGCTTTTAGAGAGAGATTACGT
GATGCATATGCATCGGGTACTAGATACACTATGGAACGTCAGCACGCAGC
CTCGAAGATCCAATCTTTTATAAGGATTCATAGAGAGAAACAGAAAGAAA
TTGAGAGAGCGAATGCAAGAAAACCGAATCATATGTACACACCTAAAGAA
AAGATTATGTACAGAGGCCATCGCAATGCAAGAACGATGATCAAAGAGGC
AAACTTTTGGGGTGATGATTTCGTACTTAGCGGTAGTGATTGCGGCCGCG
TGTTTATTTGGGACCGACATACAGCTGAACTTGTAATGCTATTAGAGGGT
GATCGGCACGTGGTCAATTGTGTACAGCCACACCCCTTTGATCCTGTTCT
TGCTACCAGTGGCATAGACCACGATATCAAGATCTGGGCTCCTCTCGCGG
AAAAACCTGCCACACTGGATCATGCCGAAGATATCATGAAACGAAACGAG
CGTATGTTGGAGGATTCAAGAGATACCATCACTGTCCCTGCTGCTTTCGT
TTTGAGAATGTTCGCCTCACTCGGCAGTATTAGAAGAAatCGCAGGCGTA
TGACGGAGGAAGACCACGAAGAAGACCAATCGAGTGATTGAATGGAATAG
TGATCGATTgaatgaacgaatgaatgaatgaatagttttgagtgaaaaaa
atgaaagaataaaatatgaaaatgtttgaataaGTGGAAAGAGTGGAAAA
ACATACCGCTTAACCTATGAAAAGAGAGAAAACTAAGATTGATTTCAACA
ACACTCGTAATTGGGACCCAAGTGTTTACCAAAAGATTGAAATATGCACT
ATACTTGTGTGGTTTTTGCTAAGAACAAATTGAGAATGAAGTTACGTGTA
AATCATAGTAGTTTGACAGATTTTTTAGCCTTTATTATTCTAATTAGAAA
ACAATCATCGATTCAATAATTCAGGAAGGTTCTACTAAGAAATAAGATTT
TAAGATATTTACTAAATTTTATCTATATATCTCAAAATAGCCCTCGAAAT
TTGTCTGTTTAAATAAGAAGGTATTTAGTAGCTTTTTCTTAGAACGGCAT
AAGTTTCTACCAGCTAACTTTTAAGCAAGAATTTGTATTATAATGTTGAT
TGTTATGttcttttttgtaaataaacatTATCATTAGCCCTTTAATTTGC
TAAAGGAATAAAGTCAAATTATTAAAACTCGAAAAATAATGATAAGTTAC
TTTTCTATTTGTTTATAAAAGTGACTTTTCACCATCAGTGACGATGTCCT
ATAAATAGTGCCAAATCTCGAATACTTTTCGATTTCGAAATTTTGCTATT
TGGGacgagagaaaaaa Run BLAST on NCBI transcript from alignment at scaffold_327:408098..415268+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059420 ID=TCONS_00059420|Name=TCONS_00059420|organism=Clytia hemisphaerica|type=transcript|length=7171bp|location=Sequence derived from alignment at scaffold_327:408098..415268+ (Clytia hemisphaerica)
AGAATGTCAGAATTCTTCTCCAGATGGATCGAAGGTGCAATGTCCTCAAC
CGTGAGGCATGCATCGACTTCAAGTGAAGATAGTGATGTAGCCCAGCCCA
CGCCTGGAAGTAGCATGCCCATACCTGGAGCTAGTATGCCCACACCTGGA
AGTAGCATGTCCACACCTGTTGGAAGCCACTCGCAATCACACCAGGAAGA
AGAATCAGCGATTTCGAATCAACGAGATGAACCTTTTAGCGGGGCACTAC
CCACTGAAGATGGAGATATCATCAGCCGAACCCTTCCATCTTTTCCTGAA
GAAGCAAATCCAAATACTCACTTAGGTGAAATAGTTGCAGAGGAACCAAT
ATCAATGGAAAATCCCTCAAATTCTGCAGACACCACTAATGGTTCCAAGA
CCAATACTACAACTGAAACCAGTATCACCCAGGATAAATATACTGAAGGG
CCAGATGAGCACACTCCTCTACTAAACAATAATCGTCCCTTAGACCTTCC
ATCATCTTCAAGAGACTATCTTCACCATTCTTATCAGACCACGAATACAT
CATCTGACATATCAGACTCGGCTGCAAATCCTCTAGATTCTGCCATTGCT
GTAGGTTCTTCAAGTATCTCACCACTATACCCTGATAGTACAACTCTTGA
TAGATCAACATCTTCAAGCGAACATCACCAACAGCCTTGTCATCGTTTCC
TTGCAGTTGCTGGTCGTTCAGATTCAACCGACCACGACGAAGAAGAATCA
CCAACAACACCAGCCTCAGATACTTCAGAATCAACATCATCAGCAACTTC
ATCCCATTCTGAATTACCAACAGACACCACAACCACCTTGGCCACCAACG
AATCCGAAGACGAATTTGAACTCGATGAAGCTTTTAGAGAGAGATTACGT
GATGCATATGCATCGGGTACTAGATACACTATGGAACGTCAGCACGCAGC
CTCGAAGATCCAATCTTTTATAAGGATTCATAGAGAGAAACAGAAAGAAA
TTGAGAGAGCGAATGCAAGAAAACCGAATCATATGTACACACCTAAAGAA
AAGATTATGTACAGAGGCCATCGCAATGCAAGAACGATGGTGAGTGCTAG
TTTTATTGTGCTCTATATTCTCGACAATTTCCAAAAcgctttaaccctat
tagccccaagcttatTTGACTTTCGTATCCccagggggtagaatctacca
ccctcgattattttcgatctagaagagctatggtcataaaatttggtaca
gatgttctccatcatgatacaattttccaggaagaaaaaaataattgatg
acgtcattcaaaaaccgatgacgtcatcacaaaatttccacccgtcggaa
aaaagcccaaatatatggtttacaaatgtgtctattacagtcgaaccaat
aaagatatttaaattctgtttgaagattctgaaagataaaaggctgttct
ttaacataattgccggttttacAATTTCCATTaagatttttccttaaaat
ctatgcttcaagatttttccttaaaatctatgctgaagatgagtgaaatt
ttcaaaatttgatgacgtcataaatgatgatcattttcaaaaaaattcct
ttgactttttaaattgatattatcaatgcctatcacgtgtaaaaatttga
aaatgatttaatgaatagtttagaagttatcagcactttaaaattttgag
ttttaagcgattttaactgggttttatgtcaagtttcacaataaagtcat
aaaacctgatctggacaacctatgacccttaaattttgcacaagtactct
ggTTAACGGATGACACTTTTTTCATGGTTGTTAAAAGTGATGGCAGAGTT
AACGGGCTACGTTGTTAGATGTACATTTTGATTAACtttggaatttaaaa
gaaagagaGGGGAAACAGTCAAACCCATTTTCAAAATGTAATTTATACAA
TTAGATCGTGCAATTATGAAATGTAGTTTCAAATTTTGGTCTTTGCcttc
aatttatttttaaaagatttttaaaacttttataattacgcacggagcga
gcgttagcgagcggagtgcgactcttttggcaaacgcatgcgcgtaagca
aaatttacaaaatttcaatgataTGCGGGCCCTAAAAATGGAAATTCCcc
ttttttttcgtctagccgctattccgCCGTGTTTAGCCTCTGGATggttc
aactttgaaaatttcgtgaaaattagcgttttttaagaagaagtcgttgc
agtgtcaatctttcggaaatttaaaaacccaatttcccgtggaaaaaatt
gacgttttttgtttttttgggacccttggggcataaggtacctcttgacc
gcaaaaatttcaaaattcgcgaattgaccgttgacagcattaggggtaaa
ggggaCCCACTGACGTCacgggtttgggaaaaacttcaaaatgcgatatc
ttcagtttgaagaagagtggagaggtcgttgacccctcattttatcggga
attttatggggaatgagatgggagggtttataaggcttgagtaggacttt
caaatttggctNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtcatcaaaa
caaaaaaaatgcgataactcgagattggaaaggaattgggaggtcgttga
cccctcattctatcgggaattttatggggaatgagatgggaaggtttata
aggcttgattacgattttcaaatttggctaaatctttagccattttcagt
tgatgacgtcatcaaaacaaaaaatgtgataactcgagattggaaaggag
tttggaaATGGCTAAACCCTCTTTGGATCGGGAAATTTATCGAGAATGCA
ACGAGAGAGGGGTGTTATGAGGCCTTAGGgcgactttaaataaaaattgg
ttaacATTTGGATAAGCagcgtgagaaaatcaaaacaaagcagccgaaaa
gaactgaactctcggaataaataatggaaaaacataaaaaaactattttt
tgatgagctcttattccattctttccaaaaagtcagtgaaattaaaactg
atgaaatatacagaaattattacaaaactactcgacacacacgtgacacg
acccaaagcaaataaattcagcTTTCGGCATTTTCGTTCGTTTTATCGGG
AAAACCAAACAGTTCTTTTCATCAATGTatgcataaaaacttgaaattct
ttaatacttgtcaagaatatattttccataacaaaacCAGGGAAATGTCT
TTGATTAAACCAGGTGTAacgagggatttttgtaaaaaatctctCGTGTC
TCTCCCAATCTTCCACAAAACTGTGTCTTTCTTTTGACTTTTTaccatca
attcttcaacaatcaacatTTCTTACTTCGAAAATTCGACACGTTTACAG
CTTGACGATAATTAAAAGTTCGCCCCAATTAGTTTTTGTtgtaaaaatgt
tgtttcagaccATTCATAGCTTAAACCAGCATGCATTTTCTCATCTATGC
ATTGAAACAGAAACAtcgaaaagtgttatcaatctgatagagaaacgcaa
taatgaagaatttcttctcaatcgaaaaaatataatacatcttctttttc
tgtgtatAGTAATGTATAACCCtttcacatctctgaaaaagctgctgcat
ttattttgaagcttagggatcgaaaaatttttctttactttgaTGTTTAT
ATCTTCGGCGGGAACTTGTCgaatttttttgttcgaatctaacaagattt
tcgaacaaaaacattcgaaattatagAGACCCGggattcccgagttattt
ttttccgagttacgaaaaaactGAGTTATCCCgagcgatgacgtcatttt
tggaataaagtgacgtcattttacattttataactcggtttattttgctt
cctttaactttccaagttatttttcattttgtaactcgggatttttgctt
cctttagctttcgagctattttttattttttaactcgggaaattgtgctt
cctttaactatccgagttatttttcctttttcaactcgggaatttttgct
tccatTTAACTTTCTGTAAGTAGATTTACGTTACACTGATTGGCCTCATA
AAAAGGCTcgactcgtaaaatatttctcgtattgcactcaaagtTTTAGG
GCCAAAGCAAATAACGTCATCGTCACAAGATTCgcagtattttgagtttt
gatccgttttaagttgtaatttttagatttatggaattttagattttcgt
tcggaatttctttgtgatttgggattttcgggaaaaaagtacgatattct
tttgagcagcggATTGATAGCCTCCACCTATTCTTATATAACTAGTGGGC
TCTAAagaatccctttcgctttgcgaacacgagactcgttctccgtgcgt
aaccccttttacgattgattttTACTGAAACATTTCTCTTCTTGTTTGAT
ATTTTCAGATCAAAGAGGCAAACTTTTGGGGTGATGATTTCGTACTTAGC
GGTAGTGATTGCGGCCGCGTGTTTATTTGGGACCGACATACAGCTGAACT
TGTAATGCTATTAGAGGGTGATCGGCACGTGGTCAATTGTGTACAGCCAC
ACCCCTTTGATCCTGGTATGTTGTCATATTTATACTTGCTGCCACGTTGC
GGAATATTTCAAGGTTTTAGCTCCCCTAGTAATTAAGTTAAGACTTTGAA
GCCAATCGTAGCATCAAGGTAGAACAACCGGCTACAGTGTGCAAACTTCC
TATTAATATTTTAAACCCATTAAATTTTTTGAGTACTTCCACATTCTGGA
AGCTTTACCAAATATCTTTTTCGAATCAACAGAGATGATTTGAGTGATGA
AAACAAGTTCAATTCAATACTGAAAGTTTCATATaagtttttataatatt
ttttgtatttgcATTGTCTAATATTAGACCATAAGTCCCCATGAAATGGA
ATAATACCTTTTTTGTTTGGAAAGTTCCAGCTCCCAgctatttcaagaaa
aaaaaaattttatatttcagTTCTTGCTACCAGTGGCATAGACCACGATA
TCAAGATCTGGGCTCCTCTCGCGGAAAAACCTGCCACACTGGATCATGCC
GAAGATGTGAGTCCTTTTACATTTGATGGCTTTCAATAATTCTTGATTGA
CTCAGATATTAGATCAGGAAAACTTAGGTTTCCTTTGGTTTTCATAAACC
AATTATATACTCTAATGTTAGCTATGTTTTATCCAATTATTTTTAGCCTG
AATCGTTCCTAGAAAAATTTATCGTTCGAGGATTAAGCACAATCCTAAAG
TTATCTTTGTCCTGAAATACCTTCCCACGAGCTTATACAGTCTCTCTCTC
TGTATTATAGATCATGAAACGAAACGAGCGTATGTTGGAGGATTCAAGAG
ATACCATCACTGTCCCTGCTGCTTTCGTTTTGAGAATGTTCGCCTCACTC
GGCAGTATTAGAAGAAGTAAGTCGATATCGTTTCCTCTTTAACTGAGATG
CGTCTTTCAAAAAAGAATATTAATTTCCCGGTTATGAAGTGAATTCAAGT
GAATAAGGAACCTGGTGGAACATGTAATTTACTTCGGTTTTACATTTGCA
CCCCTCACATGGCACatccagtttgcagagtatggcaaTGCTGCACTCGA
GGAAAAATTCGGAAATACCAAGTTCCGCACTGGAAGAAcgcacctgataa
attttggtccggACAAGGTGCACCTATTCCTCTGAAATTCGCCCAGaaag
gcaaaaaattgctaaaattagctgAACTTGAGGAAAAAATAACTGAACTC
TGCACTTAAGGTTAAAAAACTGTCCGAACTTAcacctgaaaacctcaaat
tttgcacNCACTTGAGGAAAAAATAGCTGAACTCTGCACTTGAGGTTAAA
AAACTGTCCGAACTTAcacctgaaaacctcaaattttgcacctTTTACCA
CCTTCGACTTTTTCAGAGTTGTGCAATCGAGATCTCGAGCAAATGTGCCA
CACTCTGCAAACTGACTCACATCTACCTTACATCTACCTGCTTTCTACAA
TTatgttttcatattttcatttttgttgtgACTTTTTTATTTGACCTTGA
TAGGCTTTAATGACGGAAGGGATGGGACAAAGTTCCTTCTTATTTCCCAT
CGTACATTCTGGTAATAATAATTCTACACTTGTGatgatgaaatgaaata
aaCTGTGAAAGTGTaaatatgtaattttttttctttcttcagatCGCAGG
CGTATGACGGAGGAAGACCACGAAGAAGACCAATCGAGTGATTGAATGGA
ATAGTGATCGATTgaatgaacgaatgaatgaatgaatagttttgagtgaa
aaaaatgaaagaataaaatatgaaaatgtttgaataaGTGGAAAGAGTGG
AAAAACATACCGCTTAACCTATGAAAAGAGAGAAAACTAAGATTGATTTC
AACAACACTCGTAATTGGGACCCAAGTGTTTACCAAAAGATTGAAATATG
CACTATACTTGTGTGGTTTTTGCTAAGAACAAATTGAGAATGAAGTTACG
TGTAAATCATAGTAGTTTGACAGATTTTTTAGCCTTTATTATTCTAATTA
GAAAACAATCATCGATTCAATAATTCAGGAAGGTTCTACTAAGAAATAAG
ATTTTAAGATATTTACTAAATTTTATCTATATATCTCAAAATAGCCCTCG
AAATTTGTCTGTTTAAATAAGAAGGTATTTAGTAGCTTTTTCTTAGAACG
GCATAAGTTTCTACCAGCTAACTTTTAAGCAAGAATTTGTATTATAATGT
TGATTGTTATGttcttttttgtaaataaacatTATCATTAGCCCTTTAAT
TTGCTAAAGGAATAAAGTCAAATTATTAAAACTCGAAAAATAATGATAAG
TTACTTTTCTATTTGTTTATAAAAGTGACTTTTCACCATCAGTGACGATG
TCCTATAAATAGTGCCAAATCTCGAATACTTTTCGATTTCGAAATTTTGC
TATTTGGGacgagagaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059420-exon-scaffold_327-1491911889:408098..409186 | TCONS_00059420-exon-scaffold_327-1491911889:408098..409186 | Clytia hemisphaerica | exon |
| TCONS_00059420-exon-scaffold_327-1510915933:408098..409186 | TCONS_00059420-exon-scaffold_327-1510915933:408098..409186 | Clytia hemisphaerica | exon |
| TCONS_00059420-exon-scaffold_327-1575043694:408098..409186 | TCONS_00059420-exon-scaffold_327-1575043694:408098..409186 | Clytia hemisphaerica | exon |
| TCONS_00059420-exon-scaffold_327-1491911889:412706..412862 | TCONS_00059420-exon-scaffold_327-1491911889:412706..412862 | Clytia hemisphaerica | exon |
| TCONS_00059420-exon-scaffold_327-1510915933:412706..412862 | TCONS_00059420-exon-scaffold_327-1510915933:412706..412862 | Clytia hemisphaerica | exon |
| TCONS_00059420-exon-scaffold_327-1575043694:412706..412862 | TCONS_00059420-exon-scaffold_327-1575043694:412706..412862 | Clytia hemisphaerica | exon |
| TCONS_00059420-exon-scaffold_327-1491911889:413268..413353 | TCONS_00059420-exon-scaffold_327-1491911889:413268..413353 | Clytia hemisphaerica | exon |
| TCONS_00059420-exon-scaffold_327-1510915933:413268..413353 | TCONS_00059420-exon-scaffold_327-1510915933:413268..413353 | Clytia hemisphaerica | exon |
| TCONS_00059420-exon-scaffold_327-1575043694:413268..413353 | TCONS_00059420-exon-scaffold_327-1575043694:413268..413353 | Clytia hemisphaerica | exon |
| TCONS_00059420-exon-scaffold_327-1491911889:413608..413713 | TCONS_00059420-exon-scaffold_327-1491911889:413608..413713 | Clytia hemisphaerica | exon |
| TCONS_00059420-exon-scaffold_327-1510915933:413608..413713 | TCONS_00059420-exon-scaffold_327-1510915933:413608..413713 | Clytia hemisphaerica | exon |
| TCONS_00059420-exon-scaffold_327-1575043694:413608..413713 | TCONS_00059420-exon-scaffold_327-1575043694:413608..413713 | Clytia hemisphaerica | exon |
| TCONS_00059420-exon-scaffold_327-1491911889:414490..415268 | TCONS_00059420-exon-scaffold_327-1491911889:414490..415268 | Clytia hemisphaerica | exon |
| TCONS_00059420-exon-scaffold_327-1510915933:414490..415268 | TCONS_00059420-exon-scaffold_327-1510915933:414490..415268 | Clytia hemisphaerica | exon |
| TCONS_00059420-exon-scaffold_327-1575043694:414490..415268 | TCONS_00059420-exon-scaffold_327-1575043694:414490..415268 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_327 | supercontig | scaffold_327:408098..415268 + |
Blast
BLAST of TCONS_00059420 vs. Swiss-Prot (Human)
Match: DCAF6 (DDB1- and CUL4-associated factor 6 OS=Homo sapiens GN=DCAF6 PE=1 SV=1) HSP 1 Score: 216.468 bits (550), Expect = 2.019e-59 Identity = 103/182 (56.59%), Postives = 138/182 (75.82%), Query Frame = 1
Query: 916 GTRYTM---ERQHAASKIQSFIRIHREKQK--EIERANARKPNHMYTPKEKIMYRGHRNARTMIKEANFWGDDFVLSGSDCGRVFIWDRHTAELVMLLEGDRHVVNCVQPHPFDPVLATSGIDHDIKIWAPLAE-KPATLDHAEDIMKRNERMLEDSRDTITVPAAFVLRMFASLGSIRRNR 1443
G RY +R+ A ++IQ F R +E+++ E++ N R+P K++Y+GHRN+RTMIKEANFWG +FV+SGSDCG +FIWDRHTAE +MLLE D HVVNC+QPHPFDP+LA+SGID+DIKIW+PL E + A++++ RNE MLE++R+TITVPA+F+LRM ASL IR +R
Sbjct: 666 GARYRAGPGDRRSAVARIQEFFRRRKERKEMEELDTLNIRRP------LVKMVYKGHRNSRTMIKEANFWGANFVMSGSDCGHIFIWDRHTAEHLMLLEADNHVVNCLQPHPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEETRNTITVPASFMLRMLASLNHIRADR 841
The following BLAST results are available for this feature:
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