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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059382 ID=TCONS_00059382|Name=TCONS_00059382|organism=Clytia hemisphaerica|type=transcript|length=1688bp
CTAGATAAAAGTGTGATTTCCGCTGATTTCAATTCGGGCGATATAATGTT
GCCACCACGTGATTCTTTGAACAAATTTAAGAATTCTTTATGTTCGTGAT
TGTGATCATCAATATGAAGAACGTTGCCATCTTTGATCATATTTGATGGT
AGTTTGAGAAACGCTCCGACGAATTCTTTGAATAAAGACATCTTAGTTTC
CATCTTAGTTTTGGTATGGAATAATTTTGTAAACAGCGGTAATCTTGATT
TGCATATCTCGTCCAATTTGTTATAAAAAGTGACAAATAGTTCATTGTCA
TTCGTTTCGAGCATACGTTGGACTCCGACCATGGTTGGCTTGCAACTTGA
TAATTCTCGGTTCGATTTAAATGGTTCGATATCCTTTGTTACACATAAGT
GTAACGCGGTAAAGAATTCATGGAGAACCAAGTGCCTGAACTGGTACGTC
GCTTTTTGTTCATTCCCGGCACGGTATTTGGTAATGAATCCGGTTTCTTC
AATCGGGAAACGGCATTTCAAAGATCGGATATCGGATTCGTTAAAAACGA
CTTTGTTTTCCATGTATGTGGTGACGGATAGCTGCATGATGGAATACAAC
ATTTCTACCACTTTTCGATCTTCTATGATGGACATGAGATTTGGGTATTG
ATTCGGTTTACTTTTGAAATGATTCCTGATGAAAATCAAAGACGAATAGA
AGTATAGTTCTGTTTGTGTGTTTATAGAGTTTGTCAACAGGCTGTCTTTG
TAAGCACTGCAAATAACAAAGAGAAAGACTGGCACACGGGCCATTAGACG
TAGATTGTATGATTGGGTGATTAAATCTTTGACAGTTGTTGCTTTCTCCA
TATTTTCACCGAAAAAAATGTCGATGTATTTAACGATGTTTTCGTCATCA
AATCCGCACACTTCAATAGTTTTTCGTTTCGAGTTTGTTGGTAGTTTGGT
TTTGACATGCTCGATAGCCTTGGGTCTGCCGCATGCTAACACTTTGTGGT
TTTTGAGCCAATCTCCTTTTGGGTCGAGTAAATGGAAAACAAGTTGTGCC
AGACTTTTTGCTGAGGAAGCTCCAGGTTTGTTTTGGACGTAAATGTCCTT
GAGTTCATCCATACCATCAACAATCACCAACACTCTATCAGATATCTTCA
TCAAATCGTCGAAAGTGATCGACTCAAACACCTCTGGAAATTTCAGTTCA
AAGAGTTCCTGGAGGTTAGAAAATTTACCGGACGTATCATTTAAGTCCCG
GCATGTGAATTTGAAGAGGAATTTGATCGCCGAGAGATCAGGAATCTCGC
CTTTAGCCCATTTAAATGTAAGCATATCCAATAAACTCGTTTTACCTATG
CCCCCAATACCCCTGATGAAGACAAGTTCATCATTGGGTAAGAGGACTTG
GTCTATGGATTTATGGATGGtggtttttggaagattctCTTGTTTCATCA
AAGCAGCACGGTCGGAGTTTGACCATTCTTTATCAACAACAGTAGAAGGT
AACACCACAAGATCGATAAAGACATCTTCTCTCATTACATAGTCGGTCTC
CCCGTCAGTTTCAGAAAGGGGCTTTTCGATCAGACATCTGATCAACTCGT
CTTCATAATGTTCCTCAAGTTTTTGTGATGCGCTGCGAAGTGCTGAAAAG
TAGATAAATGGAGTGTTAACCCTTTAAGCATCTTTGAG Run BLAST on NCBI protein sequence of TCONS_00059382-protein >TCONS_00059382-protein ID=TCONS_00059382-protein|Name=TCONS_00059382-protein|organism=Clytia hemisphaerica|type=polypeptide|length=511bp
MREDVFIDLVVLPSTVVDKEWSNSDRAALMKQENLPKTTIHKSIDQVLLP
NDELVFIRGIGGIGKTSLLDMLTFKWAKGEIPDLSAIKFLFKFTCRDLND
TSGKFSNLQELFELKFPEVFESITFDDLMKISDRVLVIVDGMDELKDIYV
QNKPGASSAKSLAQLVFHLLDPKGDWLKNHKVLACGRPKAIEHVKTKLPT
NSKRKTIEVCGFDDENIVKYIDIFFGENMEKATTVKDLITQSYNLRLMAR
VPVFLFVICSAYKDSLLTNSINTQTELYFYSSLIFIRNHFKSKPNQYPNL
MSIIEDRKVVEMLYSIMQLSVTTYMENKVVFNESDIRSLKCRFPIEETGF
ITKYRAGNEQKATYQFRHLVLHEFFTALHLCVTKDIEPFKSNRELSSCKP
TMVGVQRMLETNDNELFVTFYNKLDEICKSRLPLFTKLFHTKTKMETKMS
LFKEFVGAFLKLPSNMIKDGNVLHIDDHNHEHKEFLNLFKESRGGNIISP
ELKSAEITLLS Run BLAST on NCBI transcript from alignment at scaffold_326:428486..430173 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059382 ID=TCONS_00059382|Name=TCONS_00059382|organism=Clytia hemisphaerica|type=transcript|length=1688bp|location=Sequence derived from alignment at scaffold_326:428486..430173 (Clytia hemisphaerica)
CTCAAAGATGCTTAAAGGGTTAACACTCCATTTATCTACTTTTCAGCACT
TCGCAGCGCATCACAAAAACTTGAGGAACATTATGAAGACGAGTTGATCA
GATGTCTGATCGAAAAGCCCCTTTCTGAAACTGACGGGGAGACCGACTAT
GTAATGAGAGAAGATGTCTTTATCGATCTTGTGGTGTTACCTTCTACTGT
TGTTGATAAAGAATGGTCAAACTCCGACCGTGCTGCTTTGATGAAACAAG
agaatcttccaaaaaccaCCATCCATAAATCCATAGACCAAGTCCTCTTA
CCCAATGATGAACTTGTCTTCATCAGGGGTATTGGGGGCATAGGTAAAAC
GAGTTTATTGGATATGCTTACATTTAAATGGGCTAAAGGCGAGATTCCTG
ATCTCTCGGCGATCAAATTCCTCTTCAAATTCACATGCCGGGACTTAAAT
GATACGTCCGGTAAATTTTCTAACCTCCAGGAACTCTTTGAACTGAAATT
TCCAGAGGTGTTTGAGTCGATCACTTTCGACGATTTGATGAAGATATCTG
ATAGAGTGTTGGTGATTGTTGATGGTATGGATGAACTCAAGGACATTTAC
GTCCAAAACAAACCTGGAGCTTCCTCAGCAAAAAGTCTGGCACAACTTGT
TTTCCATTTACTCGACCCAAAAGGAGATTGGCTCAAAAACCACAAAGTGT
TAGCATGCGGCAGACCCAAGGCTATCGAGCATGTCAAAACCAAACTACCA
ACAAACTCGAAACGAAAAACTATTGAAGTGTGCGGATTTGATGACGAAAA
CATCGTTAAATACATCGACATTTTTTTCGGTGAAAATATGGAGAAAGCAA
CAACTGTCAAAGATTTAATCACCCAATCATACAATCTACGTCTAATGGCC
CGTGTGCCAGTCTTTCTCTTTGTTATTTGCAGTGCTTACAAAGACAGCCT
GTTGACAAACTCTATAAACACACAAACAGAACTATACTTCTATTCGTCTT
TGATTTTCATCAGGAATCATTTCAAAAGTAAACCGAATCAATACCCAAAT
CTCATGTCCATCATAGAAGATCGAAAAGTGGTAGAAATGTTGTATTCCAT
CATGCAGCTATCCGTCACCACATACATGGAAAACAAAGTCGTTTTTAACG
AATCCGATATCCGATCTTTGAAATGCCGTTTCCCGATTGAAGAAACCGGA
TTCATTACCAAATACCGTGCCGGGAATGAACAAAAAGCGACGTACCAGTT
CAGGCACTTGGTTCTCCATGAATTCTTTACCGCGTTACACTTATGTGTAA
CAAAGGATATCGAACCATTTAAATCGAACCGAGAATTATCAAGTTGCAAG
CCAACCATGGTCGGAGTCCAACGTATGCTCGAAACGAATGACAATGAACT
ATTTGTCACTTTTTATAACAAATTGGACGAGATATGCAAATCAAGATTAC
CGCTGTTTACAAAATTATTCCATACCAAAACTAAGATGGAAACTAAGATG
TCTTTATTCAAAGAATTCGTCGGAGCGTTTCTCAAACTACCATCAAATAT
GATCAAAGATGGCAACGTTCTTCATATTGATGATCACAATCACGAACATA
AAGAATTCTTAAATTTGTTCAAAGAATCACGTGGTGGCAACATTATATCG
CCCGAATTGAAATCAGCGGAAATCACACTTTTATCTAG Coding sequence (CDS) from alignment at scaffold_326:428486..430173 >TCONS_00059382 ID=TCONS_00059382|Name=TCONS_00059382|organism=Clytia hemisphaerica|type=CDS|length=1533bp|location=Sequence derived from alignment at scaffold_326:428486..430173 (Clytia hemisphaerica)
ATGAGAGAAGATGTCTTTATCGATCTTGTGGTGTTACCTTCTACTGTTGT
TGATAAAGAATGGTCAAACTCCGACCGTGCTGCTTTGATGAAACAAGaga
atcttccaaaaaccaCCATCCATAAATCCATAGACCAAGTCCTCTTACCC
AATGATGAACTTGTCTTCATCAGGGGTATTGGGGGCATAGGTAAAACGAG
TTTATTGGATATGCTTACATTTAAATGGGCTAAAGGCGAGATTCCTGATC
TCTCGGCGATCAAATTCCTCTTCAAATTCACATGCCGGGACTTAAATGAT
ACGTCCGGTAAATTTTCTAACCTCCAGGAACTCTTTGAACTGAAATTTCC
AGAGGTGTTTGAGTCGATCACTTTCGACGATTTGATGAAGATATCTGATA
GAGTGTTGGTGATTGTTGATGGTATGGATGAACTCAAGGACATTTACGTC
CAAAACAAACCTGGAGCTTCCTCAGCAAAAAGTCTGGCACAACTTGTTTT
CCATTTACTCGACCCAAAAGGAGATTGGCTCAAAAACCACAAAGTGTTAG
CATGCGGCAGACCCAAGGCTATCGAGCATGTCAAAACCAAACTACCAACA
AACTCGAAACGAAAAACTATTGAAGTGTGCGGATTTGATGACGAAAACAT
CGTTAAATACATCGACATTTTTTTCGGTGAAAATATGGAGAAAGCAACAA
CTGTCAAAGATTTAATCACCCAATCATACAATCTACGTCTAATGGCCCGT
GTGCCAGTCTTTCTCTTTGTTATTTGCAGTGCTTACAAAGACAGCCTGTT
GACAAACTCTATAAACACACAAACAGAACTATACTTCTATTCGTCTTTGA
TTTTCATCAGGAATCATTTCAAAAGTAAACCGAATCAATACCCAAATCTC
ATGTCCATCATAGAAGATCGAAAAGTGGTAGAAATGTTGTATTCCATCAT
GCAGCTATCCGTCACCACATACATGGAAAACAAAGTCGTTTTTAACGAAT
CCGATATCCGATCTTTGAAATGCCGTTTCCCGATTGAAGAAACCGGATTC
ATTACCAAATACCGTGCCGGGAATGAACAAAAAGCGACGTACCAGTTCAG
GCACTTGGTTCTCCATGAATTCTTTACCGCGTTACACTTATGTGTAACAA
AGGATATCGAACCATTTAAATCGAACCGAGAATTATCAAGTTGCAAGCCA
ACCATGGTCGGAGTCCAACGTATGCTCGAAACGAATGACAATGAACTATT
TGTCACTTTTTATAACAAATTGGACGAGATATGCAAATCAAGATTACCGC
TGTTTACAAAATTATTCCATACCAAAACTAAGATGGAAACTAAGATGTCT
TTATTCAAAGAATTCGTCGGAGCGTTTCTCAAACTACCATCAAATATGAT
CAAAGATGGCAACGTTCTTCATATTGATGATCACAATCACGAACATAAAG
AATTCTTAAATTTGTTCAAAGAATCACGTGGTGGCAACATTATATCGCCC
GAATTGAAATCAGCGGAAATCACACTTTTATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059382-exon-scaffold_326-1491911889:428486..430173 | TCONS_00059382-exon-scaffold_326-1491911889:428486..430173 | Clytia hemisphaerica | exon |
| TCONS_00059382-exon-scaffold_326-1510915933:428486..430173 | TCONS_00059382-exon-scaffold_326-1510915933:428486..430173 | Clytia hemisphaerica | exon |
| TCONS_00059382-exon-scaffold_326-1575043694:428486..430173 | TCONS_00059382-exon-scaffold_326-1575043694:428486..430173 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_326 | supercontig | scaffold_326:428486..430173 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00059382 vs. Swiss-Prot (Human)
Match: NOD2 (Nucleotide-binding oligomerization domain-containing protein 2 OS=Homo sapiens GN=NOD2 PE=1 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.771e-19 Identity = 104/431 (24.13%), Postives = 180/431 (41.76%), Query Frame = -1
Query: 303 LSETDGETDYVMREDVFIDLVVLPSTVVDKEWSNSDRAALMKQENLPKTTIHKSIDQVLLPNDELVFIRGIGGIGKTSLLDMLTFKWAKGEIPDLSAIKFLFKFTCRDLNDTSGKFSNLQELFE-LKFPEVFESITFDDLMKISDRVLVIVDGMDELKDIYVQNKPGASSA--KSLAQLVFHLLDPKGDWLKNHKVLACGRPKAIEHVKTKLPTNSKRKTIEVCGFDDENIVKYIDIFFGENMEKATTVKDLITQSYNLRLMARVPVFLFVICSAYKDSLL--TNSINTQTELYFYSSLIFIRNHF---KSKPNQYPNLMSIIEDRKVVEMLYSIMQLSVTTYMENKVVFNESDIRSLKCRFPIEETGFITKYRA-GNEQKATYQFRHLVLHEFFTALHLCVTKDIEPFKSNRELSSCKPTMVGVQRMLET 1568
LS DG + ED++ + V+ V A + E L T H + D + V + G G GK++LL L WA G+ D F+F F+CR L + S LFE +P+V + F L+ DRVL+ DG DE K + + S S+ L+F+LL +G+ LKN + + RP A+ K R + GF ++ I Y+ E ++ L+ ++ L + +PVF +++ +++ LL S T T++Y + I HF + P+ + R + L + +L++ VF+ +++ + GF+ + + A +F H+ FF A +L ++ D+ P + +P + R+L T
Sbjct: 237 LSTYDGAETLCL-EDIYTENVLEVWADVGMAGPPQKSPATLGLEELFSTPGHLNDDA------DTVLVVGEAGSGKSTLLQRLHLLWAAGQ--DFQEFLFVFPFSCRQLQCMAKPLSVRTLLFEHCCWPDVGQEDIFQLLLDHPDRVLLTFDGFDEFKFRFTDRERHCSPTDPTSVQTLLFNLL--QGNLLKNARKVVTSRPAAVSAFLRKY----IRTEFNLKGFSEQGIELYLRKRHHEPGVADRLIR-LLQETSALHGLCHLPVFSWMVSKCHQELLLQEGGSPKTTTDMY-----LLILQHFLLHATPPDSASQGLGPSLLRGRLPTLLHLGRLALWGLGMCCYVFSAQQLQAAQVSPDDISLGFLVRAKGVVPGSTAPLEFLHITFQCFFAAFYLALSADVPPALLRHLFNCGRPGNSPMARLLPT 646
The following BLAST results are available for this feature:
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