TCONS_00059382 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059382
Unique NameTCONS_00059382
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1688

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059382 ID=TCONS_00059382|Name=TCONS_00059382|organism=Clytia hemisphaerica|type=transcript|length=1688bp
CTAGATAAAAGTGTGATTTCCGCTGATTTCAATTCGGGCGATATAATGTT
GCCACCACGTGATTCTTTGAACAAATTTAAGAATTCTTTATGTTCGTGAT
TGTGATCATCAATATGAAGAACGTTGCCATCTTTGATCATATTTGATGGT
AGTTTGAGAAACGCTCCGACGAATTCTTTGAATAAAGACATCTTAGTTTC
CATCTTAGTTTTGGTATGGAATAATTTTGTAAACAGCGGTAATCTTGATT
TGCATATCTCGTCCAATTTGTTATAAAAAGTGACAAATAGTTCATTGTCA
TTCGTTTCGAGCATACGTTGGACTCCGACCATGGTTGGCTTGCAACTTGA
TAATTCTCGGTTCGATTTAAATGGTTCGATATCCTTTGTTACACATAAGT
GTAACGCGGTAAAGAATTCATGGAGAACCAAGTGCCTGAACTGGTACGTC
GCTTTTTGTTCATTCCCGGCACGGTATTTGGTAATGAATCCGGTTTCTTC
AATCGGGAAACGGCATTTCAAAGATCGGATATCGGATTCGTTAAAAACGA
CTTTGTTTTCCATGTATGTGGTGACGGATAGCTGCATGATGGAATACAAC
ATTTCTACCACTTTTCGATCTTCTATGATGGACATGAGATTTGGGTATTG
ATTCGGTTTACTTTTGAAATGATTCCTGATGAAAATCAAAGACGAATAGA
AGTATAGTTCTGTTTGTGTGTTTATAGAGTTTGTCAACAGGCTGTCTTTG
TAAGCACTGCAAATAACAAAGAGAAAGACTGGCACACGGGCCATTAGACG
TAGATTGTATGATTGGGTGATTAAATCTTTGACAGTTGTTGCTTTCTCCA
TATTTTCACCGAAAAAAATGTCGATGTATTTAACGATGTTTTCGTCATCA
AATCCGCACACTTCAATAGTTTTTCGTTTCGAGTTTGTTGGTAGTTTGGT
TTTGACATGCTCGATAGCCTTGGGTCTGCCGCATGCTAACACTTTGTGGT
TTTTGAGCCAATCTCCTTTTGGGTCGAGTAAATGGAAAACAAGTTGTGCC
AGACTTTTTGCTGAGGAAGCTCCAGGTTTGTTTTGGACGTAAATGTCCTT
GAGTTCATCCATACCATCAACAATCACCAACACTCTATCAGATATCTTCA
TCAAATCGTCGAAAGTGATCGACTCAAACACCTCTGGAAATTTCAGTTCA
AAGAGTTCCTGGAGGTTAGAAAATTTACCGGACGTATCATTTAAGTCCCG
GCATGTGAATTTGAAGAGGAATTTGATCGCCGAGAGATCAGGAATCTCGC
CTTTAGCCCATTTAAATGTAAGCATATCCAATAAACTCGTTTTACCTATG
CCCCCAATACCCCTGATGAAGACAAGTTCATCATTGGGTAAGAGGACTTG
GTCTATGGATTTATGGATGGtggtttttggaagattctCTTGTTTCATCA
AAGCAGCACGGTCGGAGTTTGACCATTCTTTATCAACAACAGTAGAAGGT
AACACCACAAGATCGATAAAGACATCTTCTCTCATTACATAGTCGGTCTC
CCCGTCAGTTTCAGAAAGGGGCTTTTCGATCAGACATCTGATCAACTCGT
CTTCATAATGTTCCTCAAGTTTTTGTGATGCGCTGCGAAGTGCTGAAAAG
TAGATAAATGGAGTGTTAACCCTTTAAGCATCTTTGAG
Run BLAST on NCBI

protein sequence of TCONS_00059382-protein

>TCONS_00059382-protein ID=TCONS_00059382-protein|Name=TCONS_00059382-protein|organism=Clytia hemisphaerica|type=polypeptide|length=511bp
MREDVFIDLVVLPSTVVDKEWSNSDRAALMKQENLPKTTIHKSIDQVLLP
NDELVFIRGIGGIGKTSLLDMLTFKWAKGEIPDLSAIKFLFKFTCRDLND
TSGKFSNLQELFELKFPEVFESITFDDLMKISDRVLVIVDGMDELKDIYV
QNKPGASSAKSLAQLVFHLLDPKGDWLKNHKVLACGRPKAIEHVKTKLPT
NSKRKTIEVCGFDDENIVKYIDIFFGENMEKATTVKDLITQSYNLRLMAR
VPVFLFVICSAYKDSLLTNSINTQTELYFYSSLIFIRNHFKSKPNQYPNL
MSIIEDRKVVEMLYSIMQLSVTTYMENKVVFNESDIRSLKCRFPIEETGF
ITKYRAGNEQKATYQFRHLVLHEFFTALHLCVTKDIEPFKSNRELSSCKP
TMVGVQRMLETNDNELFVTFYNKLDEICKSRLPLFTKLFHTKTKMETKMS
LFKEFVGAFLKLPSNMIKDGNVLHIDDHNHEHKEFLNLFKESRGGNIISP
ELKSAEITLLS
Run BLAST on NCBI

transcript from alignment at scaffold_326:428486..430173

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059382 ID=TCONS_00059382|Name=TCONS_00059382|organism=Clytia hemisphaerica|type=transcript|length=1688bp|location=Sequence derived from alignment at scaffold_326:428486..430173 (Clytia hemisphaerica)
CTCAAAGATGCTTAAAGGGTTAACACTCCATTTATCTACTTTTCAGCACT TCGCAGCGCATCACAAAAACTTGAGGAACATTATGAAGACGAGTTGATCA GATGTCTGATCGAAAAGCCCCTTTCTGAAACTGACGGGGAGACCGACTAT GTAATGAGAGAAGATGTCTTTATCGATCTTGTGGTGTTACCTTCTACTGT TGTTGATAAAGAATGGTCAAACTCCGACCGTGCTGCTTTGATGAAACAAG agaatcttccaaaaaccaCCATCCATAAATCCATAGACCAAGTCCTCTTA CCCAATGATGAACTTGTCTTCATCAGGGGTATTGGGGGCATAGGTAAAAC GAGTTTATTGGATATGCTTACATTTAAATGGGCTAAAGGCGAGATTCCTG ATCTCTCGGCGATCAAATTCCTCTTCAAATTCACATGCCGGGACTTAAAT GATACGTCCGGTAAATTTTCTAACCTCCAGGAACTCTTTGAACTGAAATT TCCAGAGGTGTTTGAGTCGATCACTTTCGACGATTTGATGAAGATATCTG ATAGAGTGTTGGTGATTGTTGATGGTATGGATGAACTCAAGGACATTTAC GTCCAAAACAAACCTGGAGCTTCCTCAGCAAAAAGTCTGGCACAACTTGT TTTCCATTTACTCGACCCAAAAGGAGATTGGCTCAAAAACCACAAAGTGT TAGCATGCGGCAGACCCAAGGCTATCGAGCATGTCAAAACCAAACTACCA ACAAACTCGAAACGAAAAACTATTGAAGTGTGCGGATTTGATGACGAAAA CATCGTTAAATACATCGACATTTTTTTCGGTGAAAATATGGAGAAAGCAA CAACTGTCAAAGATTTAATCACCCAATCATACAATCTACGTCTAATGGCC CGTGTGCCAGTCTTTCTCTTTGTTATTTGCAGTGCTTACAAAGACAGCCT GTTGACAAACTCTATAAACACACAAACAGAACTATACTTCTATTCGTCTT TGATTTTCATCAGGAATCATTTCAAAAGTAAACCGAATCAATACCCAAAT CTCATGTCCATCATAGAAGATCGAAAAGTGGTAGAAATGTTGTATTCCAT CATGCAGCTATCCGTCACCACATACATGGAAAACAAAGTCGTTTTTAACG AATCCGATATCCGATCTTTGAAATGCCGTTTCCCGATTGAAGAAACCGGA TTCATTACCAAATACCGTGCCGGGAATGAACAAAAAGCGACGTACCAGTT CAGGCACTTGGTTCTCCATGAATTCTTTACCGCGTTACACTTATGTGTAA CAAAGGATATCGAACCATTTAAATCGAACCGAGAATTATCAAGTTGCAAG CCAACCATGGTCGGAGTCCAACGTATGCTCGAAACGAATGACAATGAACT ATTTGTCACTTTTTATAACAAATTGGACGAGATATGCAAATCAAGATTAC CGCTGTTTACAAAATTATTCCATACCAAAACTAAGATGGAAACTAAGATG TCTTTATTCAAAGAATTCGTCGGAGCGTTTCTCAAACTACCATCAAATAT GATCAAAGATGGCAACGTTCTTCATATTGATGATCACAATCACGAACATA AAGAATTCTTAAATTTGTTCAAAGAATCACGTGGTGGCAACATTATATCG CCCGAATTGAAATCAGCGGAAATCACACTTTTATCTAG

Coding sequence (CDS) from alignment at scaffold_326:428486..430173

>TCONS_00059382 ID=TCONS_00059382|Name=TCONS_00059382|organism=Clytia hemisphaerica|type=CDS|length=1533bp|location=Sequence derived from alignment at scaffold_326:428486..430173 (Clytia hemisphaerica)
ATGAGAGAAGATGTCTTTATCGATCTTGTGGTGTTACCTTCTACTGTTGT
TGATAAAGAATGGTCAAACTCCGACCGTGCTGCTTTGATGAAACAAGaga
atcttccaaaaaccaCCATCCATAAATCCATAGACCAAGTCCTCTTACCC
AATGATGAACTTGTCTTCATCAGGGGTATTGGGGGCATAGGTAAAACGAG
TTTATTGGATATGCTTACATTTAAATGGGCTAAAGGCGAGATTCCTGATC
TCTCGGCGATCAAATTCCTCTTCAAATTCACATGCCGGGACTTAAATGAT
ACGTCCGGTAAATTTTCTAACCTCCAGGAACTCTTTGAACTGAAATTTCC
AGAGGTGTTTGAGTCGATCACTTTCGACGATTTGATGAAGATATCTGATA
GAGTGTTGGTGATTGTTGATGGTATGGATGAACTCAAGGACATTTACGTC
CAAAACAAACCTGGAGCTTCCTCAGCAAAAAGTCTGGCACAACTTGTTTT
CCATTTACTCGACCCAAAAGGAGATTGGCTCAAAAACCACAAAGTGTTAG
CATGCGGCAGACCCAAGGCTATCGAGCATGTCAAAACCAAACTACCAACA
AACTCGAAACGAAAAACTATTGAAGTGTGCGGATTTGATGACGAAAACAT
CGTTAAATACATCGACATTTTTTTCGGTGAAAATATGGAGAAAGCAACAA
CTGTCAAAGATTTAATCACCCAATCATACAATCTACGTCTAATGGCCCGT
GTGCCAGTCTTTCTCTTTGTTATTTGCAGTGCTTACAAAGACAGCCTGTT
GACAAACTCTATAAACACACAAACAGAACTATACTTCTATTCGTCTTTGA
TTTTCATCAGGAATCATTTCAAAAGTAAACCGAATCAATACCCAAATCTC
ATGTCCATCATAGAAGATCGAAAAGTGGTAGAAATGTTGTATTCCATCAT
GCAGCTATCCGTCACCACATACATGGAAAACAAAGTCGTTTTTAACGAAT
CCGATATCCGATCTTTGAAATGCCGTTTCCCGATTGAAGAAACCGGATTC
ATTACCAAATACCGTGCCGGGAATGAACAAAAAGCGACGTACCAGTTCAG
GCACTTGGTTCTCCATGAATTCTTTACCGCGTTACACTTATGTGTAACAA
AGGATATCGAACCATTTAAATCGAACCGAGAATTATCAAGTTGCAAGCCA
ACCATGGTCGGAGTCCAACGTATGCTCGAAACGAATGACAATGAACTATT
TGTCACTTTTTATAACAAATTGGACGAGATATGCAAATCAAGATTACCGC
TGTTTACAAAATTATTCCATACCAAAACTAAGATGGAAACTAAGATGTCT
TTATTCAAAGAATTCGTCGGAGCGTTTCTCAAACTACCATCAAATATGAT
CAAAGATGGCAACGTTCTTCATATTGATGATCACAATCACGAACATAAAG
AATTCTTAAATTTGTTCAAAGAATCACGTGGTGGCAACATTATATCGCCC
GAATTGAAATCAGCGGAAATCACACTTTTATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037388XLOC_037388Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059382-proteinTCONS_00059382-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059382-exon-scaffold_326-1491911889:428486..430173TCONS_00059382-exon-scaffold_326-1491911889:428486..430173Clytia hemisphaericaexon
TCONS_00059382-exon-scaffold_326-1510915933:428486..430173TCONS_00059382-exon-scaffold_326-1510915933:428486..430173Clytia hemisphaericaexon
TCONS_00059382-exon-scaffold_326-1575043694:428486..430173TCONS_00059382-exon-scaffold_326-1575043694:428486..430173Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_326supercontigscaffold_326:428486..430173 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.167144 0.230559 1.93259 1.65927 2.52335 2.6639 1.11992 2.04315 1.47395 0.912328 3.93874 4.31356 2.79874 5.65942 2.87386 3.69561 3.46009 4.61341 2.31309 2.23504 1.0818 1.41119 3.24922 2.35243 6.59396 3.59007 1.67381 1.78657
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007111NACHT_NTPase
IPR027417P-loop_NTPase
Blast
BLAST of TCONS_00059382 vs. Swiss-Prot (Human)
Match: NOD2 (Nucleotide-binding oligomerization domain-containing protein 2 OS=Homo sapiens GN=NOD2 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.771e-19
Identity = 104/431 (24.13%), Postives = 180/431 (41.76%), Query Frame = -1
Query:  303 LSETDGETDYVMREDVFIDLVVLPSTVVDKEWSNSDRAALMKQENLPKTTIHKSIDQVLLPNDELVFIRGIGGIGKTSLLDMLTFKWAKGEIPDLSAIKFLFKFTCRDLNDTSGKFSNLQELFE-LKFPEVFESITFDDLMKISDRVLVIVDGMDELKDIYVQNKPGASSA--KSLAQLVFHLLDPKGDWLKNHKVLACGRPKAIEHVKTKLPTNSKRKTIEVCGFDDENIVKYIDIFFGENMEKATTVKDLITQSYNLRLMARVPVFLFVICSAYKDSLL--TNSINTQTELYFYSSLIFIRNHF---KSKPNQYPNLMSIIEDRKVVEMLYSIMQLSVTTYMENKVVFNESDIRSLKCRFPIEETGFITKYRA-GNEQKATYQFRHLVLHEFFTALHLCVTKDIEPFKSNRELSSCKPTMVGVQRMLET 1568
            LS  DG     + ED++ + V+     V          A +  E L  T  H + D       + V + G  G GK++LL  L   WA G+  D     F+F F+CR L   +   S    LFE   +P+V +   F  L+   DRVL+  DG DE K  +   +   S     S+  L+F+LL  +G+ LKN + +   RP A+     K      R    + GF ++ I  Y+     E       ++ L+ ++  L  +  +PVF +++   +++ LL    S  T T++Y     + I  HF    + P+     +     R  +  L  + +L++        VF+   +++ +        GF+ + +       A  +F H+    FF A +L ++ D+ P       +  +P    + R+L T
Sbjct:  237 LSTYDGAETLCL-EDIYTENVLEVWADVGMAGPPQKSPATLGLEELFSTPGHLNDDA------DTVLVVGEAGSGKSTLLQRLHLLWAAGQ--DFQEFLFVFPFSCRQLQCMAKPLSVRTLLFEHCCWPDVGQEDIFQLLLDHPDRVLLTFDGFDEFKFRFTDRERHCSPTDPTSVQTLLFNLL--QGNLLKNARKVVTSRPAAVSAFLRKY----IRTEFNLKGFSEQGIELYLRKRHHEPGVADRLIR-LLQETSALHGLCHLPVFSWMVSKCHQELLLQEGGSPKTTTDMY-----LLILQHFLLHATPPDSASQGLGPSLLRGRLPTLLHLGRLALWGLGMCCYVFSAQQLQAAQVSPDDISLGFLVRAKGVVPGSTAPLEFLHITFQCFFAAFYLALSADVPPALLRHLFNCGRPGNSPMARLLPT 646          
The following BLAST results are available for this feature:
BLAST of TCONS_00059382 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NOD21.771e-1924.13Nucleotide-binding oligomerization domain-containi... [more]
back to top