TCONS_00059361 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059361
Unique NameTCONS_00059361
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1074

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059361 ID=TCONS_00059361|Name=TCONS_00059361|organism=Clytia hemisphaerica|type=transcript|length=1074bp
CATCAGGCGGAAAGGtaacaatgaaattacaatcaAAGCTAGGATGTACT
AAATTTACTGCTAAAGTGTAAAGAATGGTATAGCTATTGTGGAGAGCCAG
GCTGGTTTGTTGCCCCGTGACATATCTTATAGGACTAAATCTAAATGGCA
TTTTTCCTTTCGATGTGCAAGGCTGTATGTGTGGTATAAAGTATTCTGCA
GATCAAAGAAACGGAACACTACTTAAGATGGTGATACAGATATCATTTCG
TCCAATCATTTTACTTCTGATTGTATCATCTTTAATCGAGTCTGGGTCGG
CTTATTATTTAAAGAAGGGCTTTCGAAAAACAATCGATAATGATAACAAA
AGAAGTTTTAAACCAATTAGACACGGTTTTGATAATGCAGATGAACCAAT
CAGAATTGATTTAGATTCTCTACAACCAATGAGAAATGACCTTAAAGATT
TTTATCAACCAATCAATGAAGATTCAATGGACTTTAAgaaaccaatcaaa
tcaaatcattacccttttcaaacaacaaacaaaaaaagaaatttcaatga
ACAGACCGTAATCGAACCAATAGAAAACGAATTATTGGATTTTGGACCAA
TCAGTGAAGACCTGAGTCAAATCAAACCAATAAAAAACGACTTCTTGGAT
TTTAAACAAATCAGTGAAGACCTGAATCAAATCGAACCAATGGACGACTT
GGAATATGACAACGATTGGCGTAAATGTGGACGAAGATGGTGTGACGGGC
AGTATCGCATGTGTGACTCTGTTGCAAAGTCCCCTCGGGAGCAATACGAA
TGTAATATTGAGTTGTGGAAATGTCAAGACATCAGATGCTAATATCAGAA
ATATCAGTTGAGTAGGTTGAATAAAAGATAAAATAGGTATTTTTTTAGTA
TAATAACTAACCAGGACAATTTGAttgtatttgatatttttccaaTAACT
TGTACTTAATTATATAATCTACTTGAACTTAACATGAAGATATGTGCTCT
CCCATCTTCAGTTCTTTGGATATTAACGTGTGCGCGACTAAGTTGTGGTG
TTCATgttacttaagggctctgac
Run BLAST on NCBI

protein sequence of TCONS_00059361-protein

>TCONS_00059361-protein ID=TCONS_00059361-protein|Name=TCONS_00059361-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
MCGIKYSADQRNGTLLKMVIQISFRPIILLLIVSSLIESGSAYYLKKGFR
KTIDNDNKRSFKPIRHGFDNADEPIRIDLDSLQPMRNDLKDFYQPINEDS
MDFKKPIKSNHYPFQTTNKKRNFNEQTVIEPIENELLDFGPISEDLSQIK
PIKNDFLDFKQISEDLNQIEPMDDLEYDNDWRKCGRRWCDGQYRMCDSVA
KSPREQYECNIELWKCQDIRC
Run BLAST on NCBI

transcript from alignment at scaffold_326:394189..398315-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059361 ID=TCONS_00059361|Name=TCONS_00059361|organism=Clytia hemisphaerica|type=transcript|length=4127bp|location=Sequence derived from alignment at scaffold_326:394189..398315- (Clytia hemisphaerica)
CATCAGGCGGAAAGGTAACAATGAAATTACAATCAAAGCTAGGATGTACT
AAATTTACTGCTAAAGTGTAAAGAATGGTATAGCTATTGTGGAGAGCCAG
GCTGGTTTGTTGCCCCGTGACATATCTTATAGGACTAAATCTAAATGGGT
AAGGGGTTGTTTGTGATACATTTTACACTCAGAATTCCATGTTTTTTCAG
ATGGTATGGTTATTTAGATTTTTTTAAATCAGCTGTTTTAATAGGGTAGT
TCTCATTTTTGTAGTTTTGCCTATAGCGTCATACTTTTGGTCACAAAAAT
ATTTCCCTGGAATATTTGCTGGTATGTGGCGATAACATTTTAAACCGGTC
ACAGATTTCTGTAAAACCTGAGGGGTATTTGAAGCTTTTCTAAGAAGTGA
ATATCCCAAAAATTATTGTTGCTATTGTTTTCAAAAATCCGCGAAGCTTC
TGATTGGTCAAGCGCTGAAATTCTATTTTAATTTCACGTGACCTAGGTAG
GATTTCCTACCGAGATACCGGCACACTTTTCAGCTAAAGCATTCTATCTA
GTCCTGCGGGCTTTAAAAATCTGTGAAACCGGTCTGGCATTGCTCTTTAC
AGAGGAGTTTTTGTTTAACTAGACTAACTATGACAAATTACACTTCCAAT
ACGAAAGTTGACTTTTTTATGATAAAAAAACCAGAAGTTTGAATAAATTA
TCATGTCACTGGATCATTGTCATTCGGCTACTAATCCACTTATCTTGATC
AAGGTATATTAATAAGATTGCATTACATTTTTGTAGCATTTTTCCTTTCG
ATGTGCAAGGCTGTATGTGTGGTATAAAGTATTCTGCAGATCAAAGAAAC
GGTAAGTGTAAACTTAAAGGTTTTGTTTTTAAATAGGAGTGATATCGTTT
GCTTACTCATCAATTTCAATTCACAACCTTTTTCACATTGGATTGACACG
GGTGTGGAGCAAGATTGGTCAGAAATGAGAAAAAAAACAACATTTTTTTG
CTTAAATATCAGCACAATATAACAATAGCAAGACTACTGTCCTGATATGA
AATATGTGTCTGATATGAAACGAGAACACTTGTAAAAATAAAACCTTTAA
AGTCAGTCGCTTGGTTTAAATGTGCACTATTTTTGCTCTTATGGAAACCG
CTCCTAAGTGAACACTGTCATGGTTTTCACATGGTAACAGATGTACTTTT
TAGTTTCATGCATGTTATTTGAGAATTCTCAAAATGTAGAGATGCTTTTT
TTTGAGTTTTAGAGTACTACAGGGTGTTCATAATAAAAGTATCGAGTCAA
ACAACAAGTAAAACGTTTTAATGTGTATTCATGATATTCATGACGTAATG
TTTTCGACGGAAATACCCCGGTTTTAGCCAGTAGTGACAAATTCAAACTA
GACAAAAGTTGTAAATAATTTGCCACTACTGGCTAAAACCGGGGTATTTC
CGTAGAAAACATTACGTCATGAATATCATGAATGCAAGGTGTCCTGAAAA
AAAGTCCTGTGTCAGAACACGACTATACAAATAGAAAAGTTTTTGTGTGT
GTTTGTCAGTATTTACGTGATTTACTATAATACGATCTTTAAAGTCTTTT
TTACTTTTTTTGAACGAGACGTTCATTAAAATATTTCATTACACAATTAA
TATCTCGATATGTTTGTAAGTTTATTGCGTTTCTGTTTCATCGTAGCAAG
TGTTAAAAGTGTGAATAATTTTGTTGCATTAAAGTGAGAAAATAGACATA
AACACACAAAAAATCTACTTGTAGTCGTGGTCTGACACAGTCTTTTTTTT
CGCGATACCCTGTATTCACAAAATTGTATCTCGAATTCTCACTTTTTTTC
TTTGACTTTCTAAAAACGTACATTTGTACAACAAAGAAAGAACTAAAAAG
GGCCTGTAGTTAAAATTAACTTTTGTAAAAATCCTATATGATGGAGTACT
TTCTTATATTTTGGCGATAACAGACAAAGGAGACAAAGCCCTTCTACAAT
CATGGTCAAAATAGAATGAGAATTCCGGTTATTTTAACGTTTTTCAAGAT
TTAAAGTTCTGGCGAGAAAGTCGATTTTGGGCTATCTCTTTNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGCTCTACTCTTCAAACCTACTTTAGAGCACTTACAAAT
CGATTGTGGTTTCAAAACTTCCCGGTGGATTTCCCTTTTTTCTCAAATAT
TACGACCATGATTGTACTTGACATGTTCAAACTCGATATTTCTTCCGGAT
ATTCTGTACTGCGAGGAATTTTTTAACCATCGTTATCCCAGAAATGAAGC
CAAAAACCAAATGGGGTTTTCCACTTGGGAATTCTTTTGGCCTTTTCGTT
CACCGTGGGCTTGATGATATTCCACTCTGGTTGTAACATAAGGTTTTGTC
CCGGGGGGGGGGGGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGAG
TCCCACGTAGGGTCCATTTTTCGAACCTCAGCAGAGCACCCCCGTCGGTC
AACAAGGGTAGTACCCCCCCCCCGGGGGTTTTGTTTATAAAACAATTTTC
TCGCATCTCGCAAGTAGGAAGTGAGTTGTTATAATCGAGTTTTAATATAA
ATCCGTTTTTTTTCAGGAACACTACTTAAGATGGTGATACAGATATCATT
TCGTCCAATCATTTTACTTCTGATTGTATCATCTTTAATCGAGTCTGGGT
CGGCTTATTATTTAAAGAAGGGCTTTCGAAAAACAATCGATAATGATAAC
AAAAGAAGTTTTAAACCAATTAGACACGGTTTTGATAATGCAGATGAACC
AATCAGAATTGATTTAGATTCTCTACAACCAATGAGAAATGACCTTAAAG
ATTTTTATCAACCAATCAATGAAGATTCAATGGACTTTAAGAAACCAATC
AAATCAAATCATTACCCTTTTCAAACAACAAACAAAAAAAGAAATTTCAA
TGAACAGACCGTAATCGAACCAATAGAAAACGAATTATTGGATTTTGGAC
CAATCAGTGAAGACCTGAGTCAAATCAAACCAATAAAAAACGACTTCTTG
GATTTTAAACAAATCAGTGAAGACCTGAATCAAATCGAACCAATGGACGA
CTTGGAATATGACAACGATTGGCGTAAATGTGGACGAAGATGGTGTGACG
GGCAGTATCGCATGTGTGACTCTGTTGCAAAGTCCCCTCGGGAGCAATAC
GAATGTAATATTGAGTTGTGGAAATGTCAAGACATCAGATGCTAATATCA
GAAATATCAGTTGAGTAGGTTGAATAAAAGATAAAATAGGTATTTTTTTA
GTATAATAACTAACCAGGACAATTTGATTGTATTTGATATTTTTCCAATA
ACTTGTACTTAATTATATAATCTACTTGAACTTAACATGAAGATATGTGC
TCTCCCATCTTCAGTTCTTTGGATATTAACGTGTGCGCGACTAAGTTGTG
GTGTTCATGTTACTTAAGGGCTCTGAC

Coding sequence (CDS) from alignment at scaffold_326:394189..398315-

>TCONS_00059361 ID=TCONS_00059361|Name=TCONS_00059361|organism=Clytia hemisphaerica|type=CDS|length=1332bp|location=Sequence derived from alignment at scaffold_326:394189..398315- (Clytia hemisphaerica)
GAACACTACTTAAGATGGTGATACAGATATCATTTCGTCCAATCATTTTA
CTTCTGATTGTATCATCTTTAATCGAGTCTGGGTCGGCTTATTATTTAAA
GAAGGGCTTTCGAAAAACAATCGATAATGATAACAAAAGAAGTTTTAAAC
CAATTAGACACGGTTTTGATAATGCAGATGAACCAATCAGAATTGATTTA
GATTCTCTACAACCAATGAGAAATGACCTTAAAGATTTTTATCAACCAAT
CAATGAAGATTCAATGGACTTTAAGAAACCAATCAAATCAAATCATTACC
CTTTTCAAACAACAAACAAAAAAAGAAATTTCAATGAACAGACCGTAATC
GAACCAATAGAAAACGAATTATTGGATTTTGGACCAATCAGTGAAGACCT
GAGTCAAATCAAACCAATAAAAAACGACTTCTTGGATTTTAAACAAATCA
GTGAAGACCTGAATCAAATCGAACCAATGGACGACTTGGAATATGACAAC
GATTGGCGTAAATGTGGACGAAGATGGTGTGACGGGCAGTATCGCATGTG
TGACTCTGTTGCAAAGTCCCCTCGGGAGCAATACGAATGTAATATTGAGT
TGTGGAAATGTCAAGACATCAGATGCTAAATGTGTGGTATAAAGTATTCT
GCAGATCAAAGAAACGGAACACTACTTAAGATGGTGATACAGATATCATT
TCGTCCAATCATTTTACTTCTGATTGTATCATCTTTAATCGAGTCTGGGT
CGGCTTATTATTTAAAGAAGGGCTTTCGAAAAACAATCGATAATGATAAC
AAAAGAAGTTTTAAACCAATTAGACACGGTTTTGATAATGCAGATGAACC
AATCAGAATTGATTTAGATTCTCTACAACCAATGAGAAATGACCTTAAAG
ATTTTTATCAACCAATCAATGAAGATTCAATGGACTTTAAGAAACCAATC
AAATCAAATCATTACCCTTTTCAAACAACAAACAAAAAAAGAAATTTCAA
TGAACAGACCGTAATCGAACCAATAGAAAACGAATTATTGGATTTTGGAC
CAATCAGTGAAGACCTGAGTCAAATCAAACCAATAAAAAACGACTTCTTG
GATTTTAAACAAATCAGTGAAGACCTGAATCAAATCGAACCAATGGACGA
CTTGGAATATGACAACGATTGGCGTAAATGTGGACGAAGATGGTGTGACG
GGCAGTATCGCATGTGTGACTCTGTTGCAAAGTCCCCTCGGGAGCAATAC
GAATGTAATATTGAGTTGTGGAAATGTCAAGACATCAGATGCTAAATGTG
TGGTATAAAGTATTCTGCAGATCAAAGAAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037368XLOC_037368Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059361-proteinTCONS_00059361-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059361-exon-scaffold_326-1575043694:398168..398315TCONS_00059361-exon-scaffold_326-1575043694:398168..398315Clytia hemisphaericaexon
TCONS_00059361-exon-scaffold_326-1575043694:397465..397529TCONS_00059361-exon-scaffold_326-1575043694:397465..397529Clytia hemisphaericaexon
TCONS_00059361-exon-scaffold_326-1575043694:394189..395049TCONS_00059361-exon-scaffold_326-1575043694:394189..395049Clytia hemisphaericaexon
TCONS_00059361-exon-scaffold_326-1510915933:398168..398315TCONS_00059361-exon-scaffold_326-1510915933:398168..398315Clytia hemisphaericaexon
TCONS_00059361-exon-scaffold_326-1510915933:397465..397529TCONS_00059361-exon-scaffold_326-1510915933:397465..397529Clytia hemisphaericaexon
TCONS_00059361-exon-scaffold_326-1510915933:394189..395049TCONS_00059361-exon-scaffold_326-1510915933:394189..395049Clytia hemisphaericaexon
TCONS_00059361-exon-scaffold_326-1491911889:398168..398315TCONS_00059361-exon-scaffold_326-1491911889:398168..398315Clytia hemisphaericaexon
TCONS_00059361-exon-scaffold_326-1491911889:397465..397529TCONS_00059361-exon-scaffold_326-1491911889:397465..397529Clytia hemisphaericaexon
TCONS_00059361-exon-scaffold_326-1491911889:394189..395049TCONS_00059361-exon-scaffold_326-1491911889:394189..395049Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_326supercontigscaffold_326:394189..398315 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	1.12507e-06	0.799316	0.0730418	0	0	0.0911476	0.225802	0	0.0720365	0	0	0	0	4.29049	4.8263	0	0	10.9616	9.8483	3.87972	11.3886	3.76995	6.9554	199.025	166.864	0.311445	0.450738
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059361 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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