TCONS_00059332 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059332
Unique NameTCONS_00059332
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1228

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059332 ID=TCONS_00059332|Name=TCONS_00059332|organism=Clytia hemisphaerica|type=transcript|length=1228bp
GTTTCTGTGGAAACTAAAAAGCCGTCTCTTCCGTTGCTAAGGATAATTCA
GGGCCAACAATTCTTGCCTCTCCTGAGCACTAACAGTTCCTAAATTTGAT
ATGATATTCCTGAGCTGAACAATCATTTGTAGTACACGTCTTTTattaga
aaaaactatataagagcataaggcttcgatagccaaaatattgAGCACAA
GTTaagaactctaaaacacccgatacTGAGAAAAATTGACagaaatatcc
aaaaaattgggaaaataagtgcatgttaagaacatttttaggcttaaaac
tcaaaaagctaataacatccaaaggcttcaaaaatcttggatgtgcttat
aaaaaaacgtgtatattacAAACTTTTTGTTTACAGGGAATTCCTTGGAG
CCACGTGGATGAAAGATGGAAAACAAAAAAGGGCCAAGAACATTATGGAT
GCTATCAATCAATTCAACGTGACAAGTCGACTAGTCTCAACAGAGATTTT
ATCACGACCAACGCCCGCGTTACGTGCTAGCGTGATTGAGAAATGGACCG
TGGTGGCTGACATGTGCCGTTGCTTACACAACTTCAATAGTGTTTTGGCT
ATCATTACGTCATTCACATCATCTGCCATCTTTAGACTGAAGAAAACATG
GGAGAAAGTTTCAAAGCAGACACAAATTTTGATTGAGAAATTGAAAACGA
TAGTATCTGCTGATGGAAGATTCCGAAATATGAGAGAAGCGCTCAAATGT
TGTGATCCACCCAGTGTTCCATACCTTGGCTTTTATCTGACAGATCTGGC
GTCCATTGAAGAACAAACATCAGTCATTCGAGAAAGTTCGCTCGTCAATT
TCGCTAAAATGAGAATGATTACCAACGTCATCCAAGAAATTCGATTCTAT
CAAAGCTCCAGTTACATGATCGAAAAGAATGAAAAGataatGGCATACTT
AATGTGCGTCAAACACGTGAAAGACGAGGATCGAATCTACAAATTATCAC
TCGATCTGGAACGCAAAAATTCACATGCCGCAAATAAGTTGAAATTTGCG
TTTCATTTTGGCCAGTGATATTGATGATGAATataaaaatgagtttgaaa
aaCGTTTATAGTAGCTGGACCACTATAAACGTATTTAACATAGAATTCAA
AGATTCCATTGGAAGGAGTAGAGAAAAAGGTACTTTGATGATTGCCatct
tagaccatgttcagacgttacggttccg
Run BLAST on NCBI

transcript from alignment at scaffold_326:204275..209370+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059332 ID=TCONS_00059332|Name=TCONS_00059332|organism=Clytia hemisphaerica|type=transcript|length=5096bp|location=Sequence derived from alignment at scaffold_326:204275..209370+ (Clytia hemisphaerica)
GTTTCTGTGGAAACTAAAAAGCCGTCTCTTCCGTTGCTAAGGATAATTCA
GGGCCAACAATTCTTGCCTCTCCTGAGCACTAACAGTTCCTAAATTTGAT
ATGATATTCCTGAGCTGAACAATCATTTGTAGTACACGTCTTTTattaga
aaaaactatataagagcataaggcttcgatagccaaaatattgAGCACAA
GTTaagaactctaaaacacccgatacTGAGAAAAATTGACagaaatatcc
aaaaaattgggaaaataagtgcatgttaagaacatttttaggcttaaaac
tcaaaaagctaataacatccaaaggcttcaaaaatcttggatgtgcttat
aaaaaaacgtgtatattacAAACTTTTTGTTTACAGGGAATTCCTTGGAG
CCACGTGGATGAAAGATGGAAAACAAAAAAGGGCCAAGAACATTATGGAT
GCTATCAATCAATTCAACGTGGTAAGATTTGTTATACCTATTTCGAATTT
ATTCTTTAGTTCCATCTTCAAGGAACCAAGAATGGGCCATTCCAATATTC
ATAAAGGTTTGATGGACCACCTTTTTCAGGGGGTAATTCGAATAGAAGTG
TATCCAGGAGGTTTAAGGAAAGTAAATGTCtcaaatttcgcgattttcga
cctcgcgaaagatTCTTCCCGCacaagtttgtacgcctaaagtatttcgA
ATTTCTTTCCTAGGTCAAACGACGAGACTTTTAGTCGGATAATTTCCAAG
GACTCATCGCCCTTTAATTAAGCACTTGAGAGtacctaggctgctggcat
gGCATGTTCCTTATATCATCTACGATCATCTGCGATCCAGACTAGATAGT
ACCCGATATTAATTCAAGATTTGAGGTTTTGtacttttgcatttttcaat
tcTAGACAAGTCGACTAGTCTCAACAGAGATTTTATCACGACCAACGCCC
GCGTTACGTGCTAGCGTGATTGAGAAATGGACCGTGGTGGCTGACATGTG
CCGTTGCTTACACAACTTCAATAGTGTTTTGGCTATCATTACGTCATTCA
CATCATCTGCCATCTTTAGACTGAAGAAAACATGGGAGAAAGTTTCAAAG
CAGGTCAGTTTTGCAAATTGATTATTTGTACCTAGTCGATANGAGAAAGT
TTCAAAGCAGGTCAGTTATGCAAATTGATAATTTGTACCTAGTCGATAAA
CATTGAACGGGCGGTAGAAAATAAGAGGCATGGCACTGCGTCACTCTAAG
GTTGAGGGTTTGGAGATACGATAAGGTGATGAATTACCCTATGCACACCT
TGGATAAAACATTAGTGAAAATGTAAAAACGTTGCCAGTTTTACAAATTC
ATAAAAAGTCCACATTAACTTGAAGAATACCCATTCGTTATCTACCTAAT
AGTAGATGGGTCACTTATATAACTaatttcccagctggcacacaacgttg
ttttaacgttcaaataacgttatttggacgttatgaatgtcacatggacg
ttgttttgacgttgtgtgccgtgtGGGTCTGCCCTTTCTACGCGAAAGCT
CATTTTTTTCCAGTTGTAGCCCGGCCCCTAATTTAATTCGCCAGCCCTTT
CTACGCCGGCGACGGAAAAAAAGCCGAAAAGGTAAATAGTAGCTTCAGTT
CGGTATTAGCAATTCAAATCAACACTACAGTAAACTTTCTATTTGGAACC
TCTATTATTCAGATATAAAAGTtcccccttgaagatcgaattagaaaaaG
AGTCAATTGTATAAGCTTTTCATTCTAATTTAGAACTTTCCTCTTTAATT
CTAGACACAAATTTTGATTGAGAAATTGAAAACGATAGTATCTGCTGATG
GAAGATTCCGAAATATGAGAGAAGCGCTCAAATGGTATGTTATTTTGTAA
CAACAGTTTAAAAGTAAAGCTTCAtgactgacctttatataccctggact
aagatcggagttttttgaaaagtggtaccctaacgGTTGCTACTACTCGA
TGTGGGTCAATTTatatttaaatgaaattttctgtttcaaaatttttgta
cCCCTATTGAGTAGCGCTACCATTAGGATACCGCTTTCAAAGAactcaaa
aagatcaaaaaaatttcttggcCAGGAtcgagaaacttggtccaggatGC
TAGTATAAAATGCAGCTCAATGACCTTTGTATACACAAAGCATACACTCG
CATCCATTCAGCCACACATGTCTTTTACAAGTATACGAAAATCCGAAAGC
TAGCTTGGAGATGCTTGGATCAGATTGACAAGACGCAACAAGACGCGACT
GAAAATTGGCCAAtacttaagaacaaattaagaacaacttaCAAAGTACT
GATTTCAACAGAATTTAAACTACTAAGTAAAGAAACTGagcgtattaaga
acatcgtaagaacatttaagcctgaaaatttcaaaaaattaaaaacagcc
CAGCCTATTTACTGTTATCTTCTGGATTAAGTCTATTGTATTTGACTTTT
CTTATCATCCATTTTTCATTTCTAGTTGTGATCCACCCAGTGTTCCATAC
CTTGGCTTTTATCTGACAGATCTGGCGTCCATTGAAGAACAAACATCAGT
CATTCGAGAAAGTTCGCTCGTCAATTTCGCTAAAATGAGAATGGTAAGAC
TGCTATGAGAGATGTTTTTGGCAAAGTTGAACAACGTCCACGTACTTTTT
CCAAAGACATTTTCATTACTATGAGTGACCACGGGCGTGTCAAAATGTTA
ATTTTGGAGATTTGCCTCCCCAGCTTACCCTCAAATTTTATCTGTTGGGT
CTACATTAATTTCAGTGCATAGTAGTTCATATGAAAAAGGTATAAAGCAA
GacaaaaaaacattatgttCATCGATTTTACATTTAATAACACATTCTAT
GCGTTGCTAAGATTCCAATTTTTCCTGGACAAAAGTTTCTCCAACCATCC
GAGTTATTTCCACCGCTTTGTTAACCGGCCACAAATAGTATAAGTTTGCA
TCCAGAGGTATGGAAGATAGTTGGTATCTAGGTGAGAGActgaataactt
tttaaagtTTAGTTTTCAACTAGCCAAAAACCTGCCGCTTTTCTCTGATG
AAATCCTAGTCCTGCTGTAATGAATCTCATTAAATCTCATTTCAGTTATT
CTTTCATTCTTTCATCTTTGNaaaaaattaaaaacagccCAGCCTATTTA
CTGTTATCTTCTGGATTAAGTCTATTGTATTTGACTTTTCTTATCATCCA
TTTTTCATTTCTAGTTGTGATCCACCCAGTGTTCCATACCTTGGCTTTTA
TCTGACAGATCTGGCGTCCATTGAAGAACAAACATCAGTCATTCGAGAAA
GTTCGCTCGTCAATTTCGCTAAAATGAGAATGGTAAGACTGCTATGAGAG
ATGTTTTTGGCAAAGTTGAACAACGTCCACGTACTTTTTCCAAAGACATT
TTCATTACTATGAGTGACCACGGGCGTGTCAAAATGTTAATTTTGGAGAT
TTGCCTCCCCAGCTTACCCTCAAATTTTATCTGTTGGGTCTACATTAATT
TCAGTGCATAGTAGTTCATATGAAAAAGGTATAAAGCAAGacaaaaaaac
attatgttCATCGATTTTACATTTAATAACACATTCTATGCGTTGCTAAG
ATTCCAATTTTTCCTGGACAAAAGTTTCTCCAACCATCCGAGTTATTTCC
ACCGCTTTGTTAACCGGCCACAAATAGTATAAGTTTGCATCCAGAGGTAT
GGAAGATAGTTGGTATCTAGGTGAGAGActgaataactttttaaagtTTA
GTTTTCAACTAGCCAAAAACCTGCCGCTTTTCTCTGATGAAATCCTAGTC
CTGCTGTAATGAATCTCATTAAATCTCATTTCAGTTATTCTTTCATtctt
tcatctttgattttagATTACCAACGTCATCCAAGAAATTCGATTCTATC
AAAGCTCCAGTTACATGATCGAAAAGAATGAAAAGGTACGTACAGCGTGA
AAGGTTtgaaccatagatttataaagccctaagggctagatgttgtgctt
taagccatcgcatgcaaaaaaaagtgaatatcggaaaaagtATTGTTGCT
aaggttttcgaaaacctgcaaagcttctgattggtcaagcgccgAAGCTT
ACCTAACCATGGCAcacttttcaacaaaattacGCCATCTaccccttcgg
gctttataaatctatggtttgAACTTATGATTTGATACGAAAGAAAAGGA
TGGGCAAATGAATATGTTACTTTCAGTACTTTGTTAAGCCATGAACATGG
TTTAGAGCCTACAACTTTCAAAGTTCTTGATAACATTTTGAGACCACGTG
CTAATCTCTTCCAGGCGAAACTTCTATCATTCTGAGACAATATCTGGTTA
CACAATATTATCCGTTCTATCTTAAAAGTTTACAGTTtactctccctaat
tcgaactcgaacggggaatcttatttgttcgaattagaggATTTCTTCTT
GAAGGGAACTGAAAATAAGTGCAAACTATAGcaagatttgaataatagaa
gtttgAATGAGCTAATGTACTTTAACAAGCAGCCAATGTATAATGCCGGG
GGTATGAAATGAAGCTTCTTTCACACTGTAGAGAAAATTTTAACTGAATT
TTATCATTGTAAAACAAACTTGAACAtttcttttgactttttctGACTTA
CTGTGAGAAGGTGTATACggacattttttgaaagatttataaCTTGATAC
TAACTTTGTCACCAAGAAACAAGTTTATCCTCGAactttcctcttttttt
tcagataatGGCATACTTAATGTGCGTCAAACACGTGAAAGACGAGGATC
GAATCTACAAATTATCACTCGATCTGGAACGCAAAAATTCACATGCCGCA
AATAAGTTGAAATTTGCGTTTCATTTTGGCCAGTGATATTGATGATGAAT
ataaaaatgagtttgaaaaaCGTTTATAGTAGCTGGACCACTATAAACGT
ATTTAACATAGAATTCAAAGATTCCATTGGAAGGAGTAGAGAAAAAGGTA
CTTTGATGATTGCCatcttagaccatgttcagacgttacggttccg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037356XLOC_037356Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059332-exon-scaffold_326-1491911889:204275..204745TCONS_00059332-exon-scaffold_326-1491911889:204275..204745Clytia hemisphaericaexon
TCONS_00059332-exon-scaffold_326-1510915933:204275..204745TCONS_00059332-exon-scaffold_326-1510915933:204275..204745Clytia hemisphaericaexon
TCONS_00059332-exon-scaffold_326-1575043694:204275..204745TCONS_00059332-exon-scaffold_326-1575043694:204275..204745Clytia hemisphaericaexon
TCONS_00059332-exon-scaffold_326-1491911889:205180..205377TCONS_00059332-exon-scaffold_326-1491911889:205180..205377Clytia hemisphaericaexon
TCONS_00059332-exon-scaffold_326-1510915933:205180..205377TCONS_00059332-exon-scaffold_326-1510915933:205180..205377Clytia hemisphaericaexon
TCONS_00059332-exon-scaffold_326-1575043694:205180..205377TCONS_00059332-exon-scaffold_326-1575043694:205180..205377Clytia hemisphaericaexon
TCONS_00059332-exon-scaffold_326-1491911889:206079..206158TCONS_00059332-exon-scaffold_326-1491911889:206079..206158Clytia hemisphaericaexon
TCONS_00059332-exon-scaffold_326-1510915933:206079..206158TCONS_00059332-exon-scaffold_326-1510915933:206079..206158Clytia hemisphaericaexon
TCONS_00059332-exon-scaffold_326-1575043694:206079..206158TCONS_00059332-exon-scaffold_326-1575043694:206079..206158Clytia hemisphaericaexon
TCONS_00059332-exon-scaffold_326-1491911889:206800..206917TCONS_00059332-exon-scaffold_326-1491911889:206800..206917Clytia hemisphaericaexon
TCONS_00059332-exon-scaffold_326-1510915933:206800..206917TCONS_00059332-exon-scaffold_326-1510915933:206800..206917Clytia hemisphaericaexon
TCONS_00059332-exon-scaffold_326-1575043694:206800..206917TCONS_00059332-exon-scaffold_326-1575043694:206800..206917Clytia hemisphaericaexon
TCONS_00059332-exon-scaffold_326-1491911889:208191..208259TCONS_00059332-exon-scaffold_326-1491911889:208191..208259Clytia hemisphaericaexon
TCONS_00059332-exon-scaffold_326-1510915933:208191..208259TCONS_00059332-exon-scaffold_326-1510915933:208191..208259Clytia hemisphaericaexon
TCONS_00059332-exon-scaffold_326-1575043694:208191..208259TCONS_00059332-exon-scaffold_326-1575043694:208191..208259Clytia hemisphaericaexon
TCONS_00059332-exon-scaffold_326-1491911889:209079..209370TCONS_00059332-exon-scaffold_326-1491911889:209079..209370Clytia hemisphaericaexon
TCONS_00059332-exon-scaffold_326-1510915933:209079..209370TCONS_00059332-exon-scaffold_326-1510915933:209079..209370Clytia hemisphaericaexon
TCONS_00059332-exon-scaffold_326-1575043694:209079..209370TCONS_00059332-exon-scaffold_326-1575043694:209079..209370Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_326supercontigscaffold_326:204275..209370 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.180569	0.176075	3.81983e-06	0.518255	0.000235598	0.277346	0	0.128443	0.204821	0.00161146	1.05242	0.175997	0.287893	0.201384	0.55314	0.337626	0.882813	0.406952	0.673069	1.01528	0.192681	0.244755	0.400399	0.4501	0	0.00259583	6.027e-05	0.269747	0.33279	3.44555e-05
Blast
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BLAST of TCONS_00059332 vs. Swiss-Prot (Human)
Match: RGRF1 (Ras-specific guanine nucleotide-releasing factor 1 OS=Homo sapiens GN=RASGRF1 PE=1 SV=2)

HSP 1 Score: 240.35 bits (612), Expect = 1.309e-69
Identity = 120/228 (52.63%), Postives = 156/228 (68.42%), Query Frame = 1 
Query:  334 ILDVLIKKRVYYKLFVYREFLGATWMKDGKQKRAKNIMDAINQFNVTSRLVSTEILSRPTPALRASVIEKWTVVADMCRCLHNFNSVLAIITSFTSSAIFRLKKTWEKVSKQTQILIEKLKTIVSADGRFRNMREALKCCDPPSVPYLGFYLTDLASIEEQTSVIRESSLVNFAKMRMITNVIQEIRFYQSSSYMIEKNEKIMAYLMCVKHVKDEDRIYKLSLDLERK 1017
            +LD L+ K++ Y+     EF G  WMK  K +R   IM     FN  S L+++EI+       R S IEKW  VAD+CRCLHN+N+VL I +S   SAIFRLKKTW KVSKQT+ LI+KL+ +VS++GRF+N+REALK CDPP VPYLG YLTDLA IEE T    E  LVNF+KMRMI+++I+EIR +Q ++Y IE   K+  YL+    V DE+ +Y+ SL +E K
Sbjct: 1048 LLDHLVFKKIPYE-----EFFGQGWMKLEKNERTPYIMKTTKHFNDISNLIASEIIRNEDINARVSAIEKWVAVADICRCLHNYNAVLEITSSMNRSAIFRLKKTWLKVSKQTKALIDKLQKLVSSEGRFKNLREALKNCDPPCVPYLGMYLTDLAFIEEGTPNYTEDGLVNFSKMRMISHIIREIRQFQQTAYKIEHQAKVTQYLLDQSFVMDEESLYESSLRIEPK 1270
The following BLAST results are available for this feature:
BLAST of TCONS_00059332 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RGRF11.309e-6952.63Ras-specific guanine nucleotide-releasing factor 1... [more]
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