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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059313 ID=TCONS_00059313|Name=TCONS_00059313|organism=Clytia hemisphaerica|type=transcript|length=1270bp
cagatttgaaaaagtcaataccaacaaaaaaataaaagagtgaaacaaaa
aaatggcaATCCCGTTCTCCTTCACTACAAGTCCTGGTGCATCAATCTTT
GATGTCTTTGCTGAAGATTCGCTCCGTTCATCACTCAAACCTGCATGGAA
TTATCTTATGAAATTCGCGACGCAAAAATATCCAAATTACATATTGAAAG
CTTTGAAATACAGCGATGAAATTTATTACGTCTTATTGTTTGTTATGGAG
GAATATAGTTTACGGAATAAGTCTGCTTCGATGACTGAAGCATTTTATGA
GTTAAAACGTGAATCAACTGCTCTCCCTTACTCCTTCATGTTTCGACATG
CTAAAATGATTTCATTGTTATCTTTAGTGTTTATCCCTTATATTCAAGAC
AAGCTTGAGGAACGATACGAAATatcaaaagagaaaatattacgCGGTGA
TCTAAACGTCACAGATTTTGATCGATTTATTAATAAATGGTATCCATTGT
TTTTAACCATTTCAAAATGGCTTCGAATGTTGAATTATATGTTATATTTA
TTCCATTACACTGGTTATCAGGTTCCCTTACTTAAATTGACCTCTATCCA
GTTGAAATACAAAACAAACGATGCCGATGAGGGTGCATCACAAGCGAAAG
ACGAACGAACATTTTTACGTAAAATGTTAACGATTCCGTTAGATTTTGTG
ACGTCAACAATAACAAAGATGGCTCCCCTTTTGTTTTACTCGCTCTCCTT
CTTAGAGACCTACTACCAACAAGAACCATTAAGTAACAAGCCAGGAGAAG
GAACTATCCCTCCACCACAGATGCCCAAGGTATTATCCAACTCTGTCAGA
CTACCGTCATCCAAGAAACAATGTCCGCTTTGCCATCAACCTCATCAAAA
ACCATCCACCTTGCCCGTCTCTGGGTTTGTATTTTGCCATCGTTGTTTAC
ACAGCTATGTGCAGAGACATAAATGTTGTCCTGTTACGTACAGGCCGTGT
CAAGTGCAGAACATTATTCAACTGCATACGAATGCGAGTATAAACTGATT
ACACTCATGTAATACgcgtgtttttttatataagaataaatTATATAACG
CTTTGATGGCTAAAATgtaaagaacaatttaagaacattttaaggctttg
cagaccctaaaacactaatttttttaaagaaaaggggtaaaaatactcac
aaaatggtgaaaataagaacatgctaagaacattttaaggcttaaaactc
aaaaagtcaagaacttccgc Run BLAST on NCBI transcript from alignment at scaffold_326:94767..96470+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059313 ID=TCONS_00059313|Name=TCONS_00059313|organism=Clytia hemisphaerica|type=transcript|length=1704bp|location=Sequence derived from alignment at scaffold_326:94767..96470+ (Clytia hemisphaerica)
cagatttgaaaaagtcaataccaacaaaaaaataaaagagtgaaacaaaa
aaatggcaATCCCGTTCTCCTTCACTACAAGTCCTGGTGCATCAATCTTT
GATGTCTTTGCTGAAGATTCGCTCCGTTCATCACTCAAACCTGCATGGAA
TTATCTTATGAAATTCGCGACGCAAAAATATCCAAATTACATATTGAAAG
CTTTGAAATACAGCGATGAAATTTATTACGTCTTATTGTTTGTTATGGAG
GAATATAGTTTACGGAATAAGTCTGCTTCGATGACTGAAGCATTTTATGA
GTTAAAACGTGAATCAACTGCTCTCCCTTACTCCTTCATGTTTCGACATG
CTAAAATGATTTCATTGTTATCTTTAGTGTTTATCCCTTATATTCAAGAC
AAGCTTGAGGAACGATACGAAATatcaaaagagaaaatattacgCGGTGA
TCTAAACGTCACAGATTTTGATCGATTTATTAATAAATGGTATCCATTGT
TTTTAACCATTTCAAAATGGCTTCGAATGTTGAATTATATGTTATATTTA
TTCCATTACACTGGTTATCAGGTTCCCTTACTTAAATTGACCTCTATCCA
GTTGAAATACAAAACAAACGATGCCGATGAGGGTGCATCACAAGCGAAAG
ACGAACGAACATTTTTACGTAAAATGTTAACGATTCCGTTAGATTTTGTG
ACGTCAACAATAACAAAGATGGCTCCCCTTTTGTTTTACTCGCTCTCCTT
CTTAGAGACCTACTACCAACAAGAACCATTAAGTAACAAGCCAGGAGAAG
GAACTATCCCTCCACCACAGATGCCCAAGGTTGGTGATTCCTTGGAGTTA
GCCTAggctttttactttttaatatACTTACTTCATTAATTGAAATAAGA
GTCGGTGCATTTTTCCCGTGTTGTGCAtcgtaccttaagggaagaaaatt
gggcggatttggcggatttgtcTGAaacccgccaaattaagttcccgtca
aatttaattattttctttttatgtctgatttttcacaatttactcctgat
atcaaatttttcaacctTATTTCGGATTCAAAAatccgtcatccgccaaa
tcAAATTCTCGCCGAAATTAGTTTTTCGCTGATTTGTCAAATGAAATTCC
CTACGAGAAACTTTTCAgccatttgccaaattaaattaagACGACCAAGA
GGTATACTTTTATACAACCTTAATTTGTTTCCTCACATCTCTCTCTTTCT
TCACATTATCAAGGTATTATCCAACTCTGTCAGACTACCGTCATCCAAGA
AACAATGTCCGCTTTGCCATCAACCTCATCAAAAACCATCCACCTTGCCC
GTCTCTGGGTTTGTATTTTGCCATCGTTGTTTACACAGCTATGTGCAGAG
ACATAAATGTTGTCCTGTTACGTACAGGCCGTGTCAAGTGCAGAACATTA
TTCAACTGCATACGAATGCGAGTATAAACTGATTACACTCATGTAATACg
cgtgtttttttatataagaataaatTATATAACGCTTTGATGGCTAAAAT
gtaaagaacaatttaagaacattttaaggctttgcagaccctaaaacact
aatttttttaaagaaaaggggtaaaaatactcacaaaatggtgaaaataa
gaacatgctaagaacattttaaggcttaaaactcaaaaagtcaagaactt
ccgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059313-exon-scaffold_326-1491911889:94767..95595 | TCONS_00059313-exon-scaffold_326-1491911889:94767..95595 | Clytia hemisphaerica | exon |
| TCONS_00059313-exon-scaffold_326-1510915933:94767..95595 | TCONS_00059313-exon-scaffold_326-1510915933:94767..95595 | Clytia hemisphaerica | exon |
| TCONS_00059313-exon-scaffold_326-1575043694:94767..95595 | TCONS_00059313-exon-scaffold_326-1575043694:94767..95595 | Clytia hemisphaerica | exon |
| TCONS_00059313-exon-scaffold_326-1491911889:96030..96470 | TCONS_00059313-exon-scaffold_326-1491911889:96030..96470 | Clytia hemisphaerica | exon |
| TCONS_00059313-exon-scaffold_326-1510915933:96030..96470 | TCONS_00059313-exon-scaffold_326-1510915933:96030..96470 | Clytia hemisphaerica | exon |
| TCONS_00059313-exon-scaffold_326-1575043694:96030..96470 | TCONS_00059313-exon-scaffold_326-1575043694:96030..96470 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_326 | supercontig | scaffold_326:94767..96470 + |
Blast
BLAST of TCONS_00059313 vs. Swiss-Prot (Human)
Match: PEX12 (Peroxisome assembly protein 12 OS=Homo sapiens GN=PEX12 PE=1 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 3.758e-28 Identity = 94/344 (27.33%), Postives = 163/344 (47.38%), Query Frame = 2
Query: 92 SIFDVFAEDSLRSSLKPAWNYLMKFATQKYPNYILKALKYSDEIYYVLLFVMEEYSLRNKSASMTEAFYELKR------------ESTALPYSFMFRHAKMISLLSLVFIPYIQDKLEERYEISKEK----ILRGDLNVTDFDRFINKWYPLF-LTISKWLRMLNYMLYLFHYTGYQVPLLKLTSIQL-----------KYKTNDADEGASQAKDERTFLRKMLTIPLDFVTSTITKMAPLLFYSLSFLETYY---QQEPLSNKPGEGTIPPPQMPKVLSNSVRLPSSKKQCPLCHQPHQKPSTLPVSGFVFCHRCLHSYVQRHKCCPVTYRPCQVQNIIQLHT 1030
SIF+V A+DSL ++++PA +++K + P + ++ DEI+ +L +++++ L SAS +E FY LKR S LP +++ S++ LV +PY++ KLE+ +E+ I F R YP + W ++ + Y+ + PLL+L +QL ++K A A+ + L + V +++ + + L FL+ +Y QE + + T PPP S+S LP K CPLC + + L SG+VFC+RC+ YV+ H+ CP+T P +VQ++I+L++
Sbjct: 19 SIFEVVAQDSLMTAVRPALQHVVKVLAESNPTHYGFLWRWFDEIFTLLDLLLQQHYLSRTSASFSENFYGLKRIVMGDTHKSQRLASAGLPKQQLWK-----SIMFLVLLPYLKVKLEKLVSSLREEDEYSIHPPSSRWKRFYRAFLAAYPFVNMAWEGWF-LVQQLRYILGKAQHHSPLLRLAGVQLGRLTVQDIQALEHKPAKASMMQQPARSVSEKINSALKKAVGGVALSLSTGLSVGVFFLQFLDWWYSSENQETIKSLTALPTPPPPVHLDYNSDSPLLPKMKTVCPLCRKTRVNDTVLATSGYVFCYRCVFHYVRSHQACPITGYPTEVQHLIKLYS 356
The following BLAST results are available for this feature:
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