TCONS_00059282 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059282
Unique NameTCONS_00059282
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length308

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059282 ID=TCONS_00059282|Name=TCONS_00059282|organism=Clytia hemisphaerica|type=transcript|length=308bp
TCAGGACTATCCAAGCTCTCCGTCACTCTTCTCACCGTGCTTCACATCTA
CACAGCAAAGCACAGGAAGTCCACCAGCTGAAAGTTATGATATTGATATG
GAGGTTGAGGAGAAAGATGATAGTATTATTGTCCTTGACGACAATTCTGA
AGATGGCAATAACAATAACACTCAATCTGGGAAAAGCCAATACACCATat
CACCTGAAGGTGCAGAATTACTCGCAAAACTGAGAGCACCAATGCATTTA
TCTCAATCTGGGTAATTTCTCAATTTAGTCTAAGAGACTTGGAAAACCTT
TAAAGTGA
Run BLAST on NCBI

transcript from alignment at scaffold_324:76..1412-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059282 ID=TCONS_00059282|Name=TCONS_00059282|organism=Clytia hemisphaerica|type=transcript|length=1337bp|location=Sequence derived from alignment at scaffold_324:76..1412- (Clytia hemisphaerica)
TCAGGACTATCCAAGCTCTCCGTCACTCTTCTCACCGTGCTTCACATCTA
CACAGTAAGTAGTTTATCATGTTCATGNCCCCCCCCTTTAGATGAGGTTT
TATTAAGTAAAAATGTCTTGTTTTCAGGACTATCCAAGCTCTCCGTCACT
CTTCTCACCGTGCTTCACATCTACACAGTAAGTAGTTTATCATGTTCATG
GTTTTTTTAAATGCTCGTGTTCCTGTTAATCTTAAACCTAAGAAAACTTT
CATTCAATATCATGTAGATTTGATAAAAAGTCGAATCTGATTGTTTTGTC
ATAACTAAAATTTAACTTAACTTACTTAATTATATTCTCAGTTGATATTT
TCAAAAAATTTTGTGCAGATTAGATTTATTGGACAGCTCTCAGCAAAACT
AAGTTCTCAAAGAATATGTGCTTGATTTTGCAAAGATGGCCAAAACCTTG
AAAACCAATCCAATGATGTCAAATTCATTTGATATAAATCTATTAAATTT
TGATTTCTCTCCAGGCAAAGCACAGGAAGTCCACCAGCTGAAAGTTATGA
TATTGATATGGAGGTTGAGGAGAAAGATGATAGGTTTGTTTTTAAGTTTA
TAATAGTGTGGGTATTCATGTTTTGAATTTATTTTCAAAGAAAATTTTTT
CACGATTAGAATTGAATTAGAGGCCGTTTTTTTATCTTCTGATAAGTATC
ATTGTTGCTGATGTCAACATTCTTTTTAGGTTTGATTTTTTTTTTTGAAA
TCAAATCCTTTAAACCTGTAAAAATTTGAAGAACATTTTTAATATAACTC
TGTCAAAAGCTCCAAGTTTATTTAGTAATTTCTTACATTATCTTANTTTG
ATTTTTTTTTTTTTTTGAAATCAAATCCTTTAAAACTACTGTAAAAATGT
GAAGAACATTTTTAATATAACTCTGTCAAAAGCTGCAAGTTTATTTAGTA
ATTTCTTAGATTATCTTGTATTGTAGTATTATTGTCCTTGACGACAATTC
TGAAGATGGCAATAACAATAACACTCAATCTGGGAAAAGCCAATACACCA
TGTAAGATCAAGTTTTTATTTCTTATACAGTAAGAAATATCCAAATGATG
ATTGCATTGTTTATAGACATGTTAACTTTTATTTGAATGTAAATTGTGAA
AGATTATGCTGATTATCTTACAGTGTGTTGCTTTGCCTTATCTTTATTAT
TCCAGTCAATTTTTTTTTCCTTTTCAGATCACCTGAAGGTGCAGAATTAC
TCGCAAAACTGAGAGCACCAATGCATTTATCTCAATCTGGGTAATTTCTC
AATTTAGTCTAAGAGACTTGGAAAACCTTTAAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037328XLOC_037328Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059282-exon-scaffold_324-1575043694:1359..1412TCONS_00059282-exon-scaffold_324-1575043694:1359..1412Clytia hemisphaericaexon
TCONS_00059282-exon-scaffold_324-1575043694:830..898TCONS_00059282-exon-scaffold_324-1575043694:830..898Clytia hemisphaericaexon
TCONS_00059282-exon-scaffold_324-1575043694:362..436TCONS_00059282-exon-scaffold_324-1575043694:362..436Clytia hemisphaericaexon
TCONS_00059282-exon-scaffold_324-1575043694:76..185TCONS_00059282-exon-scaffold_324-1575043694:76..185Clytia hemisphaericaexon
TCONS_00059282-exon-scaffold_324-1510915933:1359..1412TCONS_00059282-exon-scaffold_324-1510915933:1359..1412Clytia hemisphaericaexon
TCONS_00059282-exon-scaffold_324-1510915933:830..898TCONS_00059282-exon-scaffold_324-1510915933:830..898Clytia hemisphaericaexon
TCONS_00059282-exon-scaffold_324-1510915933:362..436TCONS_00059282-exon-scaffold_324-1510915933:362..436Clytia hemisphaericaexon
TCONS_00059282-exon-scaffold_324-1510915933:76..185TCONS_00059282-exon-scaffold_324-1510915933:76..185Clytia hemisphaericaexon
TCONS_00059282-exon-scaffold_324-1491911889:1359..1412TCONS_00059282-exon-scaffold_324-1491911889:1359..1412Clytia hemisphaericaexon
TCONS_00059282-exon-scaffold_324-1491911889:830..898TCONS_00059282-exon-scaffold_324-1491911889:830..898Clytia hemisphaericaexon
TCONS_00059282-exon-scaffold_324-1491911889:362..436TCONS_00059282-exon-scaffold_324-1491911889:362..436Clytia hemisphaericaexon
TCONS_00059282-exon-scaffold_324-1491911889:76..185TCONS_00059282-exon-scaffold_324-1491911889:76..185Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_324supercontigscaffold_324:76..1412 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.964283	0.698532	0	0.396749	0	0	0	0	0	0	2.34466	0	0	3.21589	0	0	0	0	1.02505	0	0	0	0	0	0	0	0	0	1.1926	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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