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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059272 ID=TCONS_00059272|Name=TCONS_00059272|organism=Clytia hemisphaerica|type=transcript|length=855bp
CTTTGATTTATTTAAAAAGTTAAAAATGTTAAAAATGAATCAGGAGCATA
TCATCTACTAACCTAATAATGTTGTATTTGTTGTAGACAGAGGAGTGGTT
GTCGTAGTTGTGGTAGGCGGAGGCGTGGTTGTTGTAGTTGTTGTTGTTGT
AGTAGGCGGAGGGGTGGTTGTCGTAGTTGTGGTAAGCGGAGGCGTGGTTG
TTGTAgttgtagtAGGCGGAGAggtggttgttgtagttgttgttgTAGTA
GGCGGAGGGGTGGTTGTCGTAGTTGTGGTAGGCGGAGGcgtggttgttgt
agttgtagtAGGCGGGGAAGTGTTTGTTGTAGTTGTTTTAGGCTTAAGCG
TTGTTTTTGCAGTTGTTGTAGGCAGAGGCGTGGTTGTTGTACGCTGAAAC
TTGGTTGTTGTACTTTTAGTAGGCCAGTTCCAGGTTGTTGTGGTTGTGGT
AAGCTGTGGAGGTGTAGTTGTGGTAGGTGGAAATGTGGTAGGTGGAAATG
TGGTAGGTGGAAATGTTGCTGCTGTTATtgtcttttttgtactttgaagC
TCTTGCATATCATTTCTTTGTTCTGCTGTCTGTCGCCCAGTTCGTGTCTC
ATTCTGTAAAAAGGTAAGTTAAACTCTTTACAGTACCGCCAACTTGCAAA
GGACAGAAAAAGTTGCAGATTGTTTGTATGAAATCAATtcctttgtaaaa
tatttacatTAAACACAATGGCCACATTTTGGTTTGCCTGCCCCCTTTGT
TTATCTAAAAATGCCgttcaaaatatctcaaaaacttATTCTTTGGGGTT
AGAATACCTTAACtaactgacctttatataccctggaccaagtttctcaa
tcccg Run BLAST on NCBI transcript from alignment at scaffold_323:7428..8801+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059272 ID=TCONS_00059272|Name=TCONS_00059272|organism=Clytia hemisphaerica|type=transcript|length=1374bp|location=Sequence derived from alignment at scaffold_323:7428..8801+ (Clytia hemisphaerica)
CTTTGATTTATTTAAAAAGTTAAAAATGTTAAAAATGAATCAGGAGCATA
TCATCTACTAACCTAATAATGTTGTATTTGTTGTAGACAGAGGAGTGGTT
GTCGTAGTTGTGGTAGGCGGAGGCGTGGTTGTTGTAGTTGTTGTTGTTGT
AGTAGGCGGCGGAGTGGTTGTCGTAGTTGTTGTAGGCGGAGGCGTGGTTG
TTGTAGTTGTAGTAGGCGGTGAGGTGGTTGTTGTAGTTGTTGTTGTAGTA
GGCGGAGGGGTGGTTGTCGTAGTTGTGGTAAGCGGAGGCGTGGTTGTTGT
AgttgtagtAGGCGGAGAggtggttgttgtagttgttgttgTAGTAGGCG
GAGGGGTGGTTGTCGTAGTTGTGGTAGGCGGAGGcgtggttgttgtagtt
gtagtAGGCGGAGGCGTGGTTGTCGTAGTTGTAGTAGGCGGAGGCGTGGT
TGTCGTAGTTGTAGTAGGCGGAGGCGTGGTTGTCGTAGTTGTAGTAGGCG
GAGGCGTGGTTGTCGTAGTTGTAGTAGGCGGAGGCGTGGTTGTCGTAGTT
GTAGTAGGCGGAGGCGTGGTTGTCGTAGTTGTAGTAGGCGGGGGCGTGGT
TGTAGTAGTAGTTGTAGTAGGCAGAGGggtggttgttgtagttgtgGTAG
GCGGAGGcgtggttgttgtagttgtagtAGGCGGAGGcgtggttgttgta
gttgtgGTAAGCGGAGGcgtggttgttgtagttgtagtAGGCGGAGGCGT
GGTTGTCGTAGTTGTTGTAGGCGGAGGCGTAGTTGTAGTAGTTGTGGTAG
GCGGAGGcgtggttgttgtagttgtgGTAGGCGGGGAAGTGTTTGTTGTA
GTTGTTTTAGGCTTAAGCGTTGTTTTTGCAGTTGTTGTAGGCAGAGGCGT
GGTTGTTGTACGCTGAAACTTGGTTGTTGTACTTTTAGTAGGCCAGTTCC
AGGTTGTTGTGGTTGTGGTAAGCTGTGGAGGTGTAGTTGTGGTAGGTGGA
AATGTGGTAGGTGGAAATGTGGTAGGTGGAAATGTTGCTGCTGTTATtgt
cttttttgtactttgaagCTCTTGCATATCATTTCTTTGTTCTGCTGTCT
GTCGCCCAGTTCGTGTCTCATTCTGTAAAAAGGTAAGTTAAACTCTTTAC
AGTACCGCCAACTTGCAAAGGACAGAAAAAGTTGCAGATTGTTTGTATGA
AATCAATtcctttgtaaaatatttacatTAAACACAATGGCCACATTTTG
GTTTGCCTGCCCCCTTTGTTTATCTAAAAATGCCgttcaaaatatctcaa
aaacttATTCTTTGGGGTTAGAATACCTTAACtaactgacctttatatac
cctggaccaagtttctcaatcccg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059272-exon-scaffold_323-1491911889:7428..7582 | TCONS_00059272-exon-scaffold_323-1491911889:7428..7582 | Clytia hemisphaerica | exon |
| TCONS_00059272-exon-scaffold_323-1510915933:7428..7582 | TCONS_00059272-exon-scaffold_323-1510915933:7428..7582 | Clytia hemisphaerica | exon |
| TCONS_00059272-exon-scaffold_323-1575043694:7428..7582 | TCONS_00059272-exon-scaffold_323-1575043694:7428..7582 | Clytia hemisphaerica | exon |
| TCONS_00059272-exon-scaffold_323-1491911889:7679..7834 | TCONS_00059272-exon-scaffold_323-1491911889:7679..7834 | Clytia hemisphaerica | exon |
| TCONS_00059272-exon-scaffold_323-1510915933:7679..7834 | TCONS_00059272-exon-scaffold_323-1510915933:7679..7834 | Clytia hemisphaerica | exon |
| TCONS_00059272-exon-scaffold_323-1575043694:7679..7834 | TCONS_00059272-exon-scaffold_323-1575043694:7679..7834 | Clytia hemisphaerica | exon |
| TCONS_00059272-exon-scaffold_323-1491911889:8258..8801 | TCONS_00059272-exon-scaffold_323-1491911889:8258..8801 | Clytia hemisphaerica | exon |
| TCONS_00059272-exon-scaffold_323-1510915933:8258..8801 | TCONS_00059272-exon-scaffold_323-1510915933:8258..8801 | Clytia hemisphaerica | exon |
| TCONS_00059272-exon-scaffold_323-1575043694:8258..8801 | TCONS_00059272-exon-scaffold_323-1575043694:8258..8801 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_323 | supercontig | scaffold_323:7428..8801 + |
Blast
The following BLAST results are available for this feature:
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