TCONS_00059271 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059271
Unique NameTCONS_00059271
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length472

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059271 ID=TCONS_00059271|Name=TCONS_00059271|organism=Clytia hemisphaerica|type=transcript|length=472bp
aaaattcacttttggaatttagattttttcttatTACTGTTACTTTATTT
GGTCTTTTCAGATCGCTCAAAAAGAAGGTCATATATCCGCCGTAAGATCA
CTAAAGTCAAGGATGCAATGACCAAAGCATTGAGGGAAAAAGCCATGATT
CACGCAATGGAGGACTGCTTCAATGGGAAATTTCCTTGGAAGTCAATTGA
CGAGATGTCTTCAAATGGAATTTCTGCGACAGAAAAGAGACTGATCGTAG
ATGCTTTTATGAGATGGCGGCGATGTGAGGAAGAGAAGACGATCCTCAAG
AAAGACatggaaaactttttaaaatttaatcgTAATCGAGTAAAAGTTAT
TCGCAATGTAAGTTTATACCTTTTTATTGGgttctaaattttttatttta
catgcCCTGTACGAGGCCTTAGCCCACGATATTTATCCATTAATTAGTAT
TTTCTTGCATAATCTGTCAAAT
Run BLAST on NCBI

protein sequence of TCONS_00059271-protein

>TCONS_00059271-protein ID=TCONS_00059271-protein|Name=TCONS_00059271-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
KIHFWNLDFFLLLLLYLVFSDRSKRRSYIRRKITKVKDAMTKALREKAMI
HAMEDCFNGKFPWKSIDEMSSNGISATEKRLIVDAFMRWRRCEEEKTILK
KDMENFLKFNRNRVKVIRNVSLYLFIGF
Run BLAST on NCBI

transcript from alignment at scaffold_322:1326..1946+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059271 ID=TCONS_00059271|Name=TCONS_00059271|organism=Clytia hemisphaerica|type=transcript|length=621bp|location=Sequence derived from alignment at scaffold_322:1326..1946+ (Clytia hemisphaerica)
aaaattcacttttggaatttagattttttcttatTACTGTTACTTTATTT
GGTCTTTTCAGATCGCTCAAAAAGAAGGTCATATATCCGCCGTAAGATCA
CTAAAGTCAAGGATGCAATGACCAAAGCATTGAGGGAAAAAGCCATGATT
CACGCAATGGAGGACTGCTTCAATGGGAAATTTCCTTGGAAGTCAATTGA
CGAGATGTCTTCAAATGGAATTTCTGGTAAGATTAAGATACATAATGAct
gattttcattgaaaaatttctCATTGCTTTTTATTGTAATAGATCAAATC
TCATCCGATTTCTAGAATCTCAGGTATATACATATAAACacttttaactt
aaatttttaaactttttcactACAGCGACAGAAAAGAGACTGATCGTAGA
TGCTTTTATGAGATGGCGGCGATGTGAGGAAGAGAAGACGATCCTCAAGA
AAGACatggaaaactttttaaaatttaatcgTAATCGAGTAAAAGTTATT
CGCAATGTAAGTTTATACCTTTTTATTGGgttctaaattttttattttac
atgcCCTGTACGAGGCCTTAGCCCACGATATTTATCCATTAATTAGTATT
TTCTTGCATAATCTGTCAAAT

Coding sequence (CDS) from alignment at scaffold_322:1326..1946+

>TCONS_00059271 ID=TCONS_00059271|Name=TCONS_00059271|organism=Clytia hemisphaerica|type=CDS|length=774bp|location=Sequence derived from alignment at scaffold_322:1326..1946+ (Clytia hemisphaerica)
aaaattcacttttggaatttagattttttcttatTACTGTTACTTTATTT
GGTCTTTTCAGATCGCTCAAAAAGAAGGTCATATATCCGCCGTAAGATCA
CTAAAGTCAAGGATGCAATGACCAAAGCATTGAGGGAAAAAGCCATGATT
CACGCAATGGAGGACTGCTTCAATGGGAAATTTCCTTGGAAGTCAATTGA
CGAGATGTCTTCAAATGGAATTTCTGCGACAGAAAAGAGACTGATCGTAG
ATGCTTTTATGAGATGGCGGCGATGTGAGGAAGAGAAGACGATCCTCAAG
AAAGACatggaaaactttttaaaatttaatcgTAATCGAGTAAAAGTTAT
TCGCAATGTAAGTTTATACCTTTTTATTGGgttctaaaaaattcactttt
ggaatttagattttttcttatTACTGTTACTTTATTTGGTCTTTTCAGAT
CGCTCAAAAAGAAGGTCATATATCCGCCGTAAGATCACTAAAGTCAAGGA
TGCAATGACCAAAGCATTGAGGGAAAAAGCCATGATTCACGCAATGGAGG
ACTGCTTCAATGGGAAATTTCCTTGGAAGTCAATTGACGAGATGTCTTCA
AATGGAATTTCTGCGACAGAAAAGAGACTGATCGTAGATGCTTTTATGAG
ATGGCGGCGATGTGAGGAAGAGAAGACGATCCTCAAGAAAGACatggaaa
actttttaaaatttaatcgTAATCGAGTAAAAGTTATTCGCAATGTAAGT
TTATACCTTTTTATTGGgttctaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037321XLOC_037321Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059271-proteinTCONS_00059271-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059271-exon-scaffold_322-1491911889:1326..1551TCONS_00059271-exon-scaffold_322-1491911889:1326..1551Clytia hemisphaericaexon
TCONS_00059271-exon-scaffold_322-1510915933:1326..1551TCONS_00059271-exon-scaffold_322-1510915933:1326..1551Clytia hemisphaericaexon
TCONS_00059271-exon-scaffold_322-1575043694:1326..1551TCONS_00059271-exon-scaffold_322-1575043694:1326..1551Clytia hemisphaericaexon
TCONS_00059271-exon-scaffold_322-1491911889:1701..1946TCONS_00059271-exon-scaffold_322-1491911889:1701..1946Clytia hemisphaericaexon
TCONS_00059271-exon-scaffold_322-1510915933:1701..1946TCONS_00059271-exon-scaffold_322-1510915933:1701..1946Clytia hemisphaericaexon
TCONS_00059271-exon-scaffold_322-1575043694:1701..1946TCONS_00059271-exon-scaffold_322-1575043694:1701..1946Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_322supercontigscaffold_322:1326..1946 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.66707	1.3383	0.90192	0.951291	7.62518	7.56916	6.69366	8.07258	4.98098	4.3463	2.81534	5.86017	3.945	3.17065	3.62792	5.04844	2.98229	4.9814	1.58377	2.57328	2.80659	2.04014	1.80011	1.55661	2.94505	6.85331	3.63728	1.80833	1.21134	0.933889
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059271 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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