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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059258 ID=TCONS_00059258|Name=TCONS_00059258|organism=Clytia hemisphaerica|type=transcript|length=2342bpRun BLAST on NCBI protein sequence of TCONS_00059258-protein >TCONS_00059258-protein ID=TCONS_00059258-protein|Name=TCONS_00059258-protein|organism=Clytia hemisphaerica|type=polypeptide|length=494bp MDENKDVLSINSDSSSPTSNAEFIMVDDNISNASTATKISFSDTQSDDFMRun BLAST on NCBI transcript from alignment at scaffold_320:241192..253007- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059258 ID=TCONS_00059258|Name=TCONS_00059258|organism=Clytia hemisphaerica|type=transcript|length=11816bp|location=Sequence derived from alignment at scaffold_320:241192..253007- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_320:241192..253007- >TCONS_00059258 ID=TCONS_00059258|Name=TCONS_00059258|organism=Clytia hemisphaerica|type=CDS|length=10395bp|location=Sequence derived from alignment at scaffold_320:241192..253007- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059258 vs. Swiss-Prot (Human)
Match: RBGP1 (Rab GTPase-activating protein 1 OS=Homo sapiens GN=RABGAP1 PE=1 SV=3) HSP 1 Score: 228.024 bits (580), Expect = 1.481e-62 Identity = 139/391 (35.55%), Postives = 214/391 (54.73%), Query Frame = 2
Query: 221 MDHGQDVSQLVAEAQMDLISDYYTSNK----DQLNDIEEDFGSKKEMMRAVSPQSSDEERHMSGNDDDKDACIMFHGITYLGSSNIDAPKSDLELERAISILRDHVEECIDVILSVSVNPLGQIQLIDPQSRTEIATYDISNICYWGKGKSNSVEKDCLAFNISHGKEDVTYHCHVFKCN-EDDVKRILQSLAQTIKKDQKRKQNEFPSNRRGSKFDLNDLSFKFNIILDVWEEDGKGSFQTVARDKTH--FKLRKDLQRKLVFVIEQTSNCKLKIERCFGLLLAQGRDIPEGDFHLLQQIDTDTQIPGKT-IIHAHWDSTLDYWKVLNTDPGKDNRVYMTVAADVVFKDLKEPVRFVKEAKVRVFPSNEK-FWNPSKPRIQEDFVLELKE 1366
MD +LV +Q+D D SN+ +N + K EM V P D E + ++F +TYLG ++++AP+S++E R +SILR + +DV LSV G ++L+DPQ+ TEIA Y I I + +G + E DC AF SH ++ + HVF+C ++ V RIL S A ++ K+ + + D+ F F++ L++ E+DGKG F V +DK FKLR+ + +K+V ++QT+N +L IERCFGLLL+ G+D+ D HLL GK+ +I W+ +++V+N + KD ++MT A D+V +++EPVRF+ E KVRV NE+ FW SK E+F L+LK+
Sbjct: 73 MDDQPGEKELVKRSQLDGEGDGPLSNQLSASSTINPVPLVGLQKPEMSLPVKPGQGDSEASSPFTPVADEDSVVFSKLTYLGCASVNAPRSEVEALRMMSILRSQCQISLDVTLSVPNVSEGIVRLLDPQTNTEIANYPIYKILFCVRGHDGTPESDCFAFTESHYNAEL-FRIHVFRCEIQEAVSRILYSFATAFRRSAKQTPLSATAAPQTPDSDI----FTFSVSLEIKEDDGKGYFSAVPKDKDRQCFKLRQGIDKKIVIYVQQTTNKELAIERCFGLLLSPGKDVRNSDMHLLDLESMGKSSDGKSYVITGSWNPKSPHFQVVNEETPKDKVLFMTTAVDLVITEVQEPVRFLLETKVRVCSPNERLFWPFSKRSTTENFFLKLKQ 458 HSP 2 Score: 192.586 bits (488), Expect = 7.837e-51 Identity = 89/194 (45.88%), Postives = 132/194 (68.04%), Query Frame = 3
Query: 1620 LLSGSGEFERSYSEGELDNWKEILDKW-TDFNTKPSKLTQCIRRGNLPNAVRGDVWQRLSGNEKDDEINRSYEVLFNKDSQQEQVILWDVTRTFPAHERFREANGKGQNALYHISKAYSNYDEEVAYCQGLSFIIATFLLHVEEKEAYSLLVKMMYDYGLRDLFNNGFASLHQYFFVLDRILEVCTLHIHDMYH 2198
LLSGSG+ + +E L+ W E+L KW + N +P +L+ +R G +P A+RG+VWQ L+G +D + Y +L K+S Q+ I D+ RTFPAH+ F++ G GQ++LY I KAYS YDEE+ YCQG SF+ A LLH+ E++A+S+LVK+M+DYGLR+LF F LH F+ L+R+++ +I D+Y+
Sbjct: 522 LLSGSGDVSKECAEKILETWGELLSKWHLNLNVRPKQLSSLVRNG-VPEALRGEVWQLLAGCHNNDHLVEKYRILITKESPQDSAITRDINRTFPAHDYFKDTGGDGQDSLYKICKAYSVYDEEIGYCQGQSFLAAVLLLHMPEEQAFSVLVKIMFDYGLRELFKQNFEDLHCKFYQLERLMQE---YIPDLYN 711 The following BLAST results are available for this feature:
BLAST of TCONS_00059258 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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